Physical Sciences and Mathematics Commons^™

Grazing On Synechococcus Spp. By The Red-Tide Dinoflagellate Karenia Brevis: Implications For Bloom Dynamics In The Gulf Of Mexico, Leo A. Procise

OES Theses and Dissertations

Karenia brevis, the toxic dinoflagellate responsible for massive red tides in the Gulf of Mexico (GOM), causes fish kills, shellfish poisoning, and acute respiratory irritation in humans. Bloom initiation and maintenance have been linked to the physical environment as well as various nutrient input mechanisms. To date, efforts to quantify nitrogen (N) sources fueling K. brevis blooms in the GOM have not included mixotrophic grazing although many dinoflagellates, including K. brevis, are known to be capable of mixotrophy. This dissertation reports field and laboratory results demonstrating that natural bloom populations and K. brevisisolates from the West Florida …

Circulation Of The Western Antarctic Peninsula: Implications For Biological Production, Maria Andrea Piñones Valenzuela

OES Theses and Dissertations

The western Antarctic Peninsula (wAP) continental shelf is characterized by large persistent populations of Antarctic krill ( Enphausia superba) and by regions of enhanced concentrations of marine mammals and other predators (hot spots). This study focused on understanding the role of ocean circulation in providing retention/connectivity of wAP Antarctic krill populations and in maintaining biological hot spot regions. Numerical Lagrangian particle tracking simulations obtained from the Regional Ocean Modeling System (ROMS) configured for the wAP region provided quantitative estimates of retention, immigration and emigration from the wAP continental shelf. Additional simulations with a one-dimensional temperature-dependent growth model for krill …

Controls On The Formation Of Algal Blooms In The Lower Chesapeake Bay And Its Tributaries, Ryan Eric Morse

OES Theses and Dissertations

Algal blooms occur seasonally in the Chesapeake Bay and its tributaries, and while the consequences of algal blooms have been qualitatively and quantitatively assessed, the causes of algal blooms and mechanisms of bloom initiation are still not well understood despite decades of research. In order to understand nutrient dynamics and other factors that promote the initiation of algal blooms, the Lafayette River, a tidal sub-estuary of Chesapeake Bay that experiences seasonal algal blooms, was sampled daily in the fall of 2005. Three phytoplankton blooms (Chlorophyll a concentrations exceeding twice the average of monthly measurements from 2000-2009) occurred during this period, …

Population Dynamics Of Sheepshead (Archosargus Probatocephalus; Walbaum 1792) In The Chesapeake Bay Region: A Comparison To Other Areas And An Assessment Of Their Current Status, Joseph Charles Ballenger

OES Theses and Dissertations

Sheepshead recently have seen an increase in fishing pressure in Virginian waters of the Chesapeake Bay. This increase in fishing pressure has led to demands to install effective management measures to protect the fishery. However, no study regarding the population dynamics, and thus potential yield, of sheepshead has been conducted north of Cape Hatteras. We addressed the need for information regarding the population dynamics of Chesapeake Bay sheepshead by investigating their age distribution, growth rate and reproductive biology. We used this information to construct yield-per-recruit models, which local management agencies may use in the formation of scientifically based management measures. …

Evaluating Methods For Optimizing Classification Success From Otolith Tracers For Spotted Seatrout (Cynoscion Nebulosus) In The Chesapeake Bay, Stacy Kavita Beharry

OES Theses and Dissertations

Identifying the natal sources of fish is an important step in understanding its population dynamics. Adult recruits are often sourced from multiple nursery areas, with good quality locations contributing disproportionately more fish to the adult stock. Because population persistence is strongly influenced by nursery habitat, methods that correctly identify the source of recruits are necessary for effective management. Within the last decade, otolith chemistry signatures have been increasingly used as a natural marker to delineate fish from a mixture of nursery sources. Despite the widespread use of otolith trace element and stable isotope ratios as habitat markers, the statistical approaches …

Phosphorus Uptake In Rhodomonas Salina (Wislouch) And Its Effect On Allocation And Elimination In Acartia Tonsa (Dana), Danna Palladino

OES Theses and Dissertations

Phosphorus is a key element in important biochemical compounds, such as RNA and phospholipids, and can become limiting in a variety of marine systems. The uptake of phosphorus into biochemical fractions (protein, low molecular weight (LMW) compounds, lipid, polysaccharide and nucleic acid) in Acartia tonsa fed ³³P -labeled Rhodomonas salina was examined. R. salina was cultured on two variations of one media that in one case contained phosphorus in balance and the other out of balance with relation to other standard f/2 components. The P-balanced (PB) media had a N:P ratio of 24.5, which is higher than that found …

Changing Fecundity And Reproductive Output In Females Of A Chesapeake Bay Population Of Blue Crab, Callinectes Sapidus, Shannon L. Wells

OES Theses and Dissertations

The Chesapeake Bay blue crab, Callinectes sapidus, is an important species both ecologically and as a fishery. Fishery dependent and independent data indicate that the population declined abruptly in the mid-1990s and has remained low. Previous work prior to the decline in population abundance found a significant relationship between size and fecundity for mature females. As with many heavily fished populations, this population has experienced a reduction in the size at maturity. The objectives of this study were to reassess the fecundity of the population, determine the lipid and protein energy allocated for reproduction, and to examine the concentrations …

Factors Affecting Adult Foraging And Chick Growth Of Adélie Penguins (Pygoscelis Adeliae) Off The Western Antarctic Peninsula: A Modeling Study, Erik W. Chapman

OES Theses and Dissertations

Coupled individual-based models that simulate Adélie penguin ( Pygoscelis adeliae) chick growth and adult foraging behavior during the chick growth period were developed and used to explore factors that influence chick fledging mass and adult foraging energetics off the western Antarctic Peninsula (WAP). Adélie penguin colonies in this region are undergoing changes in population size that have been correlated with climate-driven alteration of the marine and terrestrial environment. Simulations were selected to highlight possible mechanistic linkages between climate variability and chick growth and adult foraging processes. These processes were the focus of this study because chicks that fledge at …

Characterization Of Antibiotic Resistance In Vibrio Cholerae Isolated From Ships' Ballast And Other Environmental Sources, Frank Kornegay Thomson Iii

OES Theses and Dissertations

Ships' ballast has been implicated as a vector in the dispersal of invasive species into new environments. Numerous cases have been documented for the introduction of macroorganisms via ballasting operations, but what is less known is the role of ballast water and residuals in the spread of potentially harmful microbes, especially with reference to novel genotypes. Of particular interest are the genes encoding for various forms of antibiotic resistance, many of which are carried on mobile genetic elements. A four-year sampling effort has yielded over 300 putative isolates of Vibrio cholerae from ships' ballast tanks and various environmental sources, of …

A Bio-Optical Model For Syringodium Filiforme Canopies, Margaret A. Stoughton

OES Theses and Dissertations

Seagrasses are significant ecological and biogeochemical agents in shallow water ecosystems throughout the world. In many regions, seagrass meadows occupy a sufficient fraction of the coastal zone, and generate optical signatures that can be observed from space. Bio-optical models of light absorption and scattering by submerged plant canopies for certain species such as Thalassia testudinum and Zostera marina have successfully modeled the plane irradiance distribution and photosynthesis within the submerged canopies. Syringodium filiforme differs &om T. testudinttm and Z marina, in leaf morphology and canopy architecture. The objective of this study was to develop a radiative transfer model that …

Spatial Analyses And Repletion Of Gargathy Coastal Lagoon, Loreto Herraiz Gomez

OES Theses and Dissertations

Coastal lagoons and bays vary in shape and size in response to antecedent topography, geologic processes and sea level rise. Variations in shape and environmental conditions of coastal basins are believed to influence the distribution of benthic sub-environments and the exchange of water with the ocean and other adjacent coastal systems. Gargathy Inlet and its coastal lagoon vary spatially from the inlet, where the greatest depths are observed, to the mainland, dominated by shallow intertidal areas, colonized by marsh. Hypsographic and hydro-hypsographic analyses of Gargathy's coastal lagoon were the primary techniques applied to understand the relative distribution of the benthic …

Limb Regeneration After Multiple Autotomy And Coxae Removal In The Blue Crab Callinectes Sapidus, Jennifer Ambler

OES Theses and Dissertations

This study investigated limb regeneration in the juvenile blue crab, Callinectes sapidus, specifically the role of the coxa and pedal nerve innervation of the regenerative limb bud over time. The coxa is a leg segment that has been defined as the source of positional, cellular, and neuronal information needed for limb regeneration in brachyuran crabs. This study indicates that removal of coxae under regenerative and non-regenerative conditions did not deter limb regeneration. The coxa is not the exclusive location of limb regenerative information since limbs re-grew with normal positional and functional arrangement in 86% of crabs showing regeneration at removal …

Interactions Between Phytoplankton And Bacteria In The Uptake Of Organic Compounds, Andrea Michel Rocha

OES Theses and Dissertations

The most common methods for estimating bacterial productivity are [³H]-leucine and [³H]-thymidine incorporation. Uptake of these compounds has been attributed primarily to bacteria; however, because dissolved organic nitrogen may be an important N source for some phytoplankton, the use of these compounds to estimate bacterial productivity needs to be reexamined. In order to ascertain whether phytoplankton could compete with bacteria on relevant timescales and thereby bias bacterial productivity estimates in estuaries, I examined the ability of cultured phytoplankton and size-fractionated natural populations to take up leucine and thymidine in systems seasonally dominated by phytoplankton mixotrophs. In …

Characterization Of Β-Lactam Resistant Pandemic Serotypes Of Vibrio Cholerae Isolated From Ships' Ballast Tanks And Coastal Waters, Amanda Lynn Goodrich

OES Theses and Dissertations

Vibrio cholerae serotypes 01 and 0139 are responsible for world-wide epidemics of cholera. These pandemic causing strains must possess genes that encode for the cholera toxin (CTX) and toxin co-regulated pili (TCP) in order to infect their hosts. In this study, 284 isolates of Vibrio cholerae from ballast and coastal waters were serotyped, with 11 % testing positive for serotype 01 and 21 % testing positive for serotype 0139. PCR assays were used to detect the presence of ctxA and tcpA genes in all positive isolates, none of which contained ctxA while 2% of the isolates contained tcpA. The 01 …

Age Validation And Reproductive Biology Of Bluefish, Pomatomus Saltatrix, Along The East Coast Of United States, Eric Robillard

OES Theses and Dissertations

I describe a new preparation technique that increases readability of otoliths, along with criteria for the interpretation of otolith microstructure of bluefish, Pomatomus saltatrix, collected from Florida to New York during 2001-2003 (n = 2652). I validated annulus formation in otoliths for ages 1 to 8 using marginal increment analysis and thus extended validation by four years to include the preponderance of age classes in the catch. Although otoliths are typically superior for ageing, bluefish are routinely aged with scales; thus a side-by-side comparison of otoliths versus scales is necessary before otoliths can supplant scales. When compared, precision …

Interannual Variation Of Stratification In Lower Chesapeake Bay, Christopher S. Katzenmiller

OES Theses and Dissertations

Stratification in the water column can prove to be an important indicator to the state of the water column and ecosystem. The focus of this research is to evaluate trends in stratification in the Lower Chesapeake Bay. Detailed analysis was performed on a 14 year data set to study interannual variation in the region of study. Potential energy anomaly was used to quantify stratification. Potential energy anomaly is the amount of energy required to mix a water column. It is determined from the vertical density structure of density. Potential energy anomaly is the departure of potential energy from climate conditions. …

An Investigation Of Dissolved Organic Matter In A Shallow Coastal Bay Subject To Aureococcus Anophagefferens Blooms, Jean-Paul Simjouw

OES Theses and Dissertations

Aureococcus anophagefferens, the pelagophyte responsible for brown tide blooms, was identified in Chincoteague Bay in 1997 and has “bloomed” there since at least 1998. Aureococcus anophagefferens is capable of using dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) substrates to support growth, and this utilization is hypothesized to give the organism a competitive advantage relative to other phytoplankton when inorganic nutrient concentrations are low or depleted. Because previous studies suggest dissolved organic matter (DOM) is important in initiating and sustaining brown tide blooms, a field study of the variations in DOC concentration and DOM composition was performed at …

Trichodesmium Spp.: Numerical Studies Of Resource Competition, Carbohydrate Ballasting, And Remote-Sensing Reflectance, Tonya Denise Clayton

OES Theses and Dissertations

In recent years, a new appreciation for the role of diazotrophy in the oceans has emerged. This dissertation reports on three modeling studies designed to investigate ecological processes associated with Trichodesmium spp., the most conspicuous marine diazotroph: (1) characterization of a generalized model Trichodesmium and issues of macronutrient resource competition; (2) carbohydrate ballasting by Trchodesmium and implications for the formation of surface accumulations; and (3) the vertical distribution of Trichodesmium and implications for detection from space.

The first study focuses on issues of nitrogen and phosphorus competition and ecosystem structure. It utilizes a simple ecosystem model that includes dissolved nitrogen …

Nitrate Reductase Activity, Nitrate Uptake And Iodine Speciation In The Marine Environment, Chin-Chang Hung

OES Theses and Dissertations

The present method for the determination of new production (NP) by measuring the uptake of added ¹⁵NO₃^– suffers from a number of limitations. In an attempt to improve this situation, this research examined the possibility of estimating ¹⁵NO₃– uptake by measuring the activity of nitrate reductase (NRA). In addition, because it has long been suspected that the biological reduction of IO₃^– to I^– may be mediated by nitrate reductase (NR), this research investigated the ability of NR to catalyze the reduction of iodate to iodide.

An improved method for the determination …

The Impacts Of External Nutrient Sources On Marine Phytoplankton In An Eastern Shore Sea-Side Estuary, Claudette Lajoie Jenkins

OES Theses and Dissertations

The Eastern Shore of Virginia (Greens Creek) as well as a large portion of the North Atlantic coastline is characterized by estuarine systems not dominated by large river systems. Instead, small freshwater creeks influence many coastal systems yet little information has been documented on their ecological significance. The focus of this research is to identify the biogeochemical and physical interactions within an estuarine water-column and understand the importance of freshwater sources in governing phytoplankton production. The hypothesis of this research is that increases in external nutrient loading into Greens Creek will not result in an increase in primary production. The …

Modeling Environmental Effects On Msx Prevalence And Intensity In Eastern Oyster (Crassostrea Virginica) Populations, Michelle Christine Paraso

OES Theses and Dissertations

An oyster population model coupled with a model for Haplosporidium nelsoni, the causative agent of the oyster disease MSX, was used with salinity time-series constructed from Delaware River flow measurements to study environmentally-induced variations in the annual cycle of this disease. Simulations with this model were designed to investigate the effect of increased or decreased spring freshwater discharge, the timing of high freshwater runoff, the presence or absence of a fall or late spring phytoplankton bloom, and the occurrence of a warm winter on MSX prevalence and intensity in Delaware Bay oyster populations. Model simulations for the lower Bay site …

Non-Volatile Dissolved Organic Iodine In Marine Water, Xianhao Cheng

OES Theses and Dissertations

An analytical scheme for the determination of marine DOI has been established. The concentration of DOI is estimated as total iodine (TI) minus total inorganic iodine (TII). The concentration of total iodine is determined as [special characters omitted] after DOI has been oxidized to inorganic iodine quantitatively by intensive UV-irradiation and all the inorganic iodine in the samples had been converted to [special characters omitted] by the addition of NaClO.

Production of DOI in seawater can be via both non-phytoplankton and phytoplankton related processes. In the former, iodide is converted to DOI. In the latter, most likely, iodate is converted …

Influence Of Physics On The Distribution Of Ichthyoplankton Across The Chesapeake Bay Plume, Christian S. Reiss

OES Theses and Dissertations

Most marine fish have retained pelagic larval stages that are spawned away from juvenile habitats. Physical and biological processes on a number of scales may affect larval survival. Mesoscale features like estuarine or riverine plumes and fronts are thought to affect larval survival by transporting larvae to juvenile habitats or by retaining larvae in favorable developmental habitats. It is likely that these features are major contributors in the regulation of shelf-spawned estuarine-dependent taxa.

This study examined how physical oceanographic features affected the spatial distribution of ichthyoplankton across the Chesapeake Bay Plume. Larval surveys were conducted across the shelf and within …

The Effects Of Organic Matter Rich Topsoil On The Germination Growth And Metal Uptake Of Corn (Zea Mays) Grown In Flue Dust Contaminated Soil, Christopher Allen Impellitteri

OES Theses and Dissertations

The large biomass of corn (Zea mays) and promising results from a previous experiment (Chlopecka and Adriano, 1995) concerning metal uptake by corn indicate that corn may be a good candidate for phytoremediation of trace metal contaminated soil. Appling soil (acid, thermic, typic paleudult) was treated with increasing levels of a metal rich flue dust based on Zn concentration (0, 150, 300, 600, 1200, and 2400 mg/kg). Four replicates at each Zn treatment level were either limed to pH 6.3-6.5 and covered with a two inch thick layer of organic matter rich topsoil (OM), unlimed and covered with …

Modeling Plankton Community Structure Under Environmental Forcing On The Southeastern United States Continental Shelf, Andrew Glenn Edward Haskell

OES Theses and Dissertations

A system of coupled ordinary differential equations was developed to investigate the time-dependent behavior of phytoplankton, copepod, and doliolid populations associated with upwelling features on the outer southeastern U.S. continental shelf. Model equations describe the interactions of nitrate, ammonium, two phytoplankton size fractions, five copepod developmental stages, doliolids, and a detrital pool. Model dynamics are based primarily upon data obtained from field and laboratory experiments made for southeastern U.S. continental shelf plankton populations. Numerous simulations were performed to investigate the effects of environmental variability on the temporal distribution of the structure of resident plankton populations. Variations on a reference simulation, …

Distribution Of Free Marine Viruses Of Lower Chesapeake Bay And Their Effects On Life-History Parameters Of The Estuarine Copepod Acartia Tonsa Dana, Lisa A. Drake

OES Theses and Dissertations

Naturally occurring viruses are very abundant in fresh, estuarine, and marine waters, with densities on the order of 10⁵-10⁸ viruses ml^-1. Research has focused on virus effects on bacteria, cyanobacteria, and phytoplankton, as well as mechanisms of virus production and decay. However, little is known about the distribution of viruses in benthic environments or virus effects on organisms in higher trophic levels.

To determine the distribution of virus-like particles (VLPs) and bacteria in the lower Chesapeake Bay, vertical profiles of VLPs and bacteria were determined through the water column and 15-25 cm into the sediment …

Recruitment Of Blue Crab, Callinectes Sapidus, Postlarvae To The Back-Barrier Lagoons Of Virginia's Eastern Shore, Robert D. Brumbaugh

OES Theses and Dissertations

Most research on the early life history of the blue crab, Callinectes sapidus, has been conducted in large partially stratified estuaries such as the Chesapeake Bay. In contrast, little is known about the recruitment dynamics or habitat requirements of blue crab postlarvae (megalopae) in shallow well-mixed lagoonal systems that make up a considerable part of the species' range. In Virginia's coastal lagoons, planktonic blue crab megalopae are most abundant at night on flooding tides, and are not abundant during the daytime or on ebbing tides. This appears to enhance retention within the lagoons, despite the short residence time of water …

The Effects Of Environmental Variability On The Population Structure Of The Eastern Oyster (Crassostrea Virginica): A Modeling Study, Margaret Mcmanus Dekshenieks

OES Theses and Dissertations

Three models were coupled to investigate the effects of changes in environmental conditions on the population structure of the Eastern oyster, Crassostrea virginica. The first model, a time-dependent model of the oyster population as described in Powell et al. (1992) and Hofmann et al. (1992, 1995), tracks the distribution, development, spawning, and mortality of sessile oyster populations. The post-settlement model incorporates mortality through parasitism, predation, food depletion and extremes in environmental conditions. The post-settlement model supplies the initial abundance of larvae spawned into the water column, and in turn is the recipient of cohorts of spawn which survive through metamorphosis. …

Seasonal And Mesoscale Variability In The Distribution Of Antarctic Krill, Euphausia Superba, West Of The Antarctic Peninsula, Cathy Meyer Lascara

OES Theses and Dissertations

Observations collected between November 1991 and September 1993 during four multidisciplinary cruises were analyzed to provide a description of seasonal and mesoscale variability in the distribution and abundance of Antarctic krill, Euphausia superba, within continental shelf waters west of the Antarctic Peninsula and to investigate possible relationships between variability in krill distributions and variability in selected environmental parameters. Acoustic measurements of krill were made each season at designated locations to estimate the abundance of krill, in terms of vertically-integrated krill biomass and the number of aggregations, characterize the depth distribution of krill, and provide a quantitative description of the size, …

Methods For The Comparison Of Timing Behavior Applied To The Pink Salmon Fisheries Of Prince William Sound, Alaska, Louis J. Rugolo

OES Theses and Dissertations

Harvest control in salmonid fisheries was examined as a problem in the formulation of regulations which restrict time and area of fishing. An ability to rigorously define and compare the form of the progression of migration across time and between harvest areas was judged fundamental to objective harvest decisions. Identification and evaluation of statistical methods appropriate to the comparison of empirical migratory time densities was performed.

The development of the measure of central tendency (mean date) of the time density as the consistent, unbiased estimator of migratory behavior was given. Practical evidence demonstrated that the mean date was highly resistant …