Physical Sciences and Mathematics Commons^™

Molecular Genetic Analysis Of Stygobiotic Shrimps Of The Genus Xiphocaridinella (Crustacea: Decapoda: Atyidae) Reveals A Connection Between Distant Caves In Central Abkhazia, Southwestern Caucasus, Ivan Marin, Ilya Turbanov

International Journal of Speleology

Based on the morpho-genetic study of stygobiotic shrimps from the genus Xiphocaridinella Sadowsky, 1930 (Crustacea: Decapoda: Atyidae), a hydrogeological connection of a number of distant caves in Central Abkhazia of the southwestern Caucasus is satisfied, which indicates the possibility of using biospeleological studies in some cases to identify karst hydrosystems together with traditional hydrogeological methods. Moreover, a new stygobiotic atyid shrimp from the genus Xiphocaridinella, X. kelasuri sp. n., is described based on morphology and analysis of mitochondrial cytochrome oxidase I DNA sequences from three distant caves. The new species is genetically divergent from relatives and phylogenetically related to …

A Macro Analysis Of Illegal Hunting And Fishing Across Texas Counties: Using An Economic Structural Approach, Leo J. Genco Jr.

USF Tampa Graduate Theses and Dissertations

The purpose of this disseration is to examine the distribution of illegal hunting and fishing violations across Texas counties in respect to the economic structure. Illegal hunting plays a part in the extraction of resources that are overly withdrawn, and criminologists have ignored this form of deviancy that has large ramifications for the environment. To view this criminal phenomenon, the study uses the Treadmill of Production theory to determine economic structural factors and whether those factors explain the distribution of illegal hunting and fishing. Using regression analyses and SatScan, the findings suggested that while there are significant factors related to …

An Investigation Of Habitat Suitability Factors And Their Interactions For Predicting Gopher Tortoise Habitat, Abigail V. Lavallin

USF Tampa Graduate Theses and Dissertations

This thesis evaluates the interaction between four habitat factors vital to the gopher tortoise in Florida. Federally and state listed as threatened throughout its entire range, the gopher tortoise is vital to protect, not only for itself individually but its burrows provide an essential habitat to over 300 species making it a key stone species within its environment. Historic habitat modeling methods are reviewed for the gopher tortoise to highlight the gap on this topic. This research expanded on the methods utilized by Baskaran et al. (2006) evaluating the soil, landcover, percentage of canopy cover and the depth to water …

Assessing Preservation Priorities Of Caves And Karst Areas Using The Frequency Of Endemic Cave-Dwelling Species, Eugen Nitzu, Marius Vlaicu, Andrei Giurginca, Ioana N. Meleg, Ionut Popa, Augustin Nae, Ştefan Baba

International Journal of Speleology

Endemic and rare species as bioindicators of habitat vulnerability were used to develop protection and management plans for biotope prioritization (mainly islands habitats, lava tubes or groundwaters). Due to their narrow distribution, the endemic species (species confined to a restricted geographic area) are more susceptible to ecological disequilibrium and habitat loss than the widespread ones. Consequently, endemics become endangered in the context of ecological disturbance caused by anthropogenic pressure, making them suitable candidates to assess environmental preservation needs. Taking into consideration that most of the stygobitic and troglobitic species are endemic and confined to specific karst areas, based on their …

The Ecology Of Antibiotic Resistance: Sources And Persistence Of Vancomycin-Resistant Enterococci And Antibiotic Resistant Genes In Aquatic Environments, Suzanne M. Young

USF Tampa Graduate Theses and Dissertations

The growing crisis of antibiotic resistance is a major threat to ecosystems and human health. Infections caused by known and emerging antibiotic resistant pathogens are on the rise globally, with approximately 700,000 deaths per year caused by antibiotic resistant bacteria (1). In the United States, infections from antibiotic resistant bacteria cause more than 2 million illnesses and 23,000 deaths (2). Antibiotic resistant bacteria and antibiotic resistance genes are released into aquatic ecosystems through hospital waste, residential sewer lines and animal agricultural waste streams. Animal agriculture accounts for approximately 70% of antibiotic use in the United States (3). In agricultural ecosystems, …

Whiting Events Off Southwest Florida: Remote Sensing And Field Observations, Jacqueline Long

USF Tampa Graduate Theses and Dissertations

“Whiting” is a term used to describe a sharply defined patch of water that contains high levels of suspended, fine-grained calcium carbonate (CaCO₃). These features are named for their bright (at times white) appearance when compared to surrounding waters, and have been found to occur globally, persisting for multiple consecutive days. Although whitings have been widely studied using chemical, biological, geological, and physical techniques, there has been little effort to document their spatio-temporal distributions in a systematic way, not to mention the lack of consensus on what generates whitings and allows them to persist for days to weeks …

The Effect Of Home Range Estimation Techniques On Habitat Use Analysis, Brendon Quinton

USF Tampa Graduate Theses and Dissertations

The term “home range” refers to the area in which an animal spends most of its time during everyday activities. This study examined the effects of four different home range estimation techniques on the proportions of habitats located therein. The study utilized a point dataset collected for twenty individual Florida Black Bears (Ursus americanus floridanus), occurring in five different areas throughout the state of Florida. Each dataset was used to create home ranges using the following techniques: (1) Minimum Convex Polygon, (2) Kernel Density Estimation, (3) Characteristic Hull Polygon, and (4) Time-Geographic Density Estimation, a new home range …

Acropora Habitat Evaluation And Restoration Site Selection Using A Species Distribution Modeling Approach, Katherine Wirt Ames

USF Tampa Graduate Theses and Dissertations

While populations of nearly all stony coral species along the Florida reef tract have exhibited decline, the most notable decline has occurred in the once-dominant acroporid species (Acropora cervicornis, A. palmata). Both species were listed in 2006 as threatened under the Endangered Species Act. This listing, combined with their continued decline, has resulted in large-scale restoration efforts throughout Florida and the Western Caribbean. Currently, there is little to no information regarding spatial prioritization of sites for these restoration efforts. The primary objective of this dissertation was to utilize species distribution modeling, informed by existing data from the …

The Development Of A Fluorescence-Based Reverse Flow Injection Analysis (Rfia) Method For Quantifying Ammonium At Nanomolar Concentrations In Oligotrophic Seawater, William Abbott

USF Tampa Graduate Theses and Dissertations

The goal of this thesis was to adopt a reverse flow injection analysis (rFIA) technique to the fluorometric analysis of the reaction o-phthaldialdehyde (OPA) with ammonium, allowing accurate measurements of ammonium concentrations lower than the detection limit of the widely used indophenol blue (IPB) colorimetric method while accounting for the background fluorescence of seawater. Ammonium is considered an essential nutrient for primary productivity, especially in the nutrient depleted surface ocean where as the most reduced form of dissolved inorganic nitrogen, it is readily assimilated via metabolic pathways. Challenges in the quantification of ammonium require more sensitive analytical techniques for …

Use Of A Towed Camera System For Estimating Reef Fish Populations Densities On The West Florida Shelf, Sarah Elizabeth Grasty

USF Tampa Graduate Theses and Dissertations

Reef fish species tend to reside over high relief habitat which makes them difficult to sample with traditional gears such as nets and trawls. Therefore, implementing and understanding the strengths and weaknesses of new approaches which incorporate acoustic and optical methods has become a priority for reef fish stock assessment. Beginning in June of 2013, a towed camera system known as the Camera-Based Assessment Survey System (C-BASS) has been used to visualize over 500 kilometers of transect and record more than 80 hours of video over several habitats in the Gulf of Mexico. Surveys have been completed on the West …

The Cova Des Pas De Vallgornera (Llucmajor, Mallorca): A Singular Deposit Bearing An Exceptional Well Preserved Early Pleistocene Vertebrate Fauna, Pere Bover, Alex Valenzuela, Carmen Guerra, Juan Rofes, Josep A. Alcover, Joaquin Gines, Joan J. Fornos, Gloria Cuenca-Bescós, Antoni Merino

International Journal of Speleology

The Cova des Pas de Vallgornera is the longest cave of Mallorca (Balearic Islands, Western Mediterranean) and one of the 30 longest caves in the world. The exploration of one of the galleries allowed the discovery of a fossiliferous deposit of vertebrate remains in a remarkable preservation state. The fossil faunal complex found in this gallery is composed of up to 5 mammalian species (Myotragus aff. kopperi, Hypnomys onicensis, Nesiotites aff. ponsi, Rhinolophus aff. mehelyi and Pipistrellus sp.), at least 14 bird species (among them two Mallorcan endemic taxa: Pica mourerae and Athene vallgornerensis), one …

Relative Survival Of Gags Mycteroperca Microlepis Released Within A Recreational Hook-And-Line Fishery: Application Of The Cox Regression Model To Control For Heterogeneity In A Large-Scale Mark-Recapture Study, Beverly J. Sauls

USF Tampa Graduate Theses and Dissertations

The objectives of this study were to measure injuries and impairments directly observed from gags Mycteroperca microlepis caught and released within a large-scale recreational fishery, develop methods that may be used to rapidly assess the condition of reef fish discards, and estimate the total portion of discards in the fishery that suffer latent mortality. Fishery observers were placed on for-hire charter and headboat vessels operating in the Gulf of Mexico from June 2009 through December 2012 to directly observe reef fishes as they were caught by recreational anglers fishing with hook-and-line gear. Fish that were not retained by anglers were …

A Study Of The Eastern Oyster, Crassostrea Virginica, In Tampa Bay: Effects Of Perkinsus Marinus On Reproduction And Condition, Bridgit Melora Mccrickard

USF Tampa Graduate Theses and Dissertations

Abstract

Five sites in Tampa Bay, Florida, were sampled monthly from February 2006 to January 2007. These sites were located at the mouth of the Alafia River, in an inlet of Cross Bayou, on the easement of Gandy Bridge, near mangrove in Manatee County, and an inlet of Salt Creek, off Bayboro Harbor. Standard methods were used to determine shell height and Condition Index (CI). Intensity and prevalence of Perkinsus marinus were analyzed using Ray's Thioglycollate medium test, while Haplosporidium nelsoni was studied by histological examination. Histological methods were also used to determine sex ratios, reproductive phases, and egg diameters. …

Fishermen, Politics, And Participation: An Ethnographic Examination Of Commercial Fisheries Management In St. Croix, U.S. Virgin Islands, Cynthia Grace-Mccaskey

USF Tampa Graduate Theses and Dissertations

Currently, there is widespread debate regarding the overall status of the world's fisheries, with some researchers projecting their total collapse in only a few decades, and others concluding the situation is not quite as bleak. Additional debates include what strategies should be used to manage fisheries at various scales, and further research is needed to determine which strategies are most appropriate for use in particular situations and locales, as context is critical.

Recently, prominent common pool resources scholars have expressed the need for ethnographic approaches to studying resource management institutions in order to move beyond the current focus of simply …

A Spatially Explicit Agent Based Model Of Muscovy Duck Home Range Behavior, James Howard Anderson

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Research in GIScience has identified agent-based simulation methodologies as effective in the study of complex adaptive spatial systems (CASS). CASS are characterized by the emergent nature of their spatial expressions and by the changing relationships between their constituent variables and how those variables act on the system's spatial expression over time. Here, emergence refers to a CASS property where small-scale, individual action results in macroscopic or system-level patterns over time. This research develops and executes a spatially-explicit agent based model of Muscovy Duck home range behavior. Muscovy duck home range behavior is regarded as a complex adaptive spatial system …

Assessment Of Diver Impact During The Spiny Lobster Sport Season, Florida Keys, Usa, Mark Lewis Hartman

USF Tampa Graduate Theses and Dissertations

The Spiny Lobster (Panulirus argus) fishery in Florida is closed during the spawning season (March-July) except for a two-day recreational `miniseason' for sport divers in July, several days prior to the opening of the commercial fishing season. In Monroe County, recreational fishers, who possess a valid Saltwater Fishing License with crawfish stamp, are allowed to harvest six lobsters per day, each with a minimum carapace length of 76.2 mm (3.0 inches). During these two days, approximately 50,000 people attempt to catch lobster, and the number of boats visiting the reef has been estimated to be up to 900 times higher …

The World’S Deepest Subterranean Community - Krubera-Voronja Cave (Western Caucasus), Alberto Sendra, Ana Sofia P.S. Reboleira

International Journal of Speleology

Subsurface biota extends over a wide variety of habitats that can be spatially interconnected. The largest communities of this subsurface biota inhabit cavities and are well known mainly in caves where biologists are able to have access. Data about deep subterranean communities and arthropods living under one thousand meters was unknown.

An expedition to world’s deepest cave, Krubera-Voronja in Western Caucasus, revealed an interesting subterranean community, living below 2000 meters and represented by more than 12 species of arthropods, including several new species for science. This deep cave biota is composed of troglobionts and also epigean species, that can penetrate …

Chemical Defense In The Cave-Dwelling Millipede Brachydesmus Troglobius Daday, 1889 (Diplopoda, Polydesmidae), Slobodan E. Makarov, Ljubodrag V. Vujisić, Božidar P. M. Ćurčić, Bojan S. Ilić, Vele V. Tešević, Vlatka E. Vajs, Ivan M. Vučković, Bojan M. Mitić, Luka R. Lučić, Iris Ž. Đorđević

International Journal of Speleology

The troglomorphic millipede Brachydesmus troglobius Daday, 1889 (Polydesmida: Polydesmidae) secretes allomones from glands on both lateral surfaces of its body segments. The secretion was identified by gas chromatography-mass spectrometry (GC-MS) analysis with electron and chemical ionization, and was shown to be composed of a mixture of benzaldehyde, benzyl alcohol, benzoylnitrile, benzoic acid and mandelonitrile benzoate. Hydrogen cyanide was qualitatively identified by the picric acid test. This is the first identification of these compounds in a cave-dwelling polydesmid.

Relative Abundance And Spatial Distribution Of Lepomid Sunfishes In The Peace River, Justin Henry Heller

USF Tampa Graduate Theses and Dissertations

This study examines spatially continuous sampling data in order to investigate patterns of abundance and distribution of three recreationally important sunfish species (bluegill, redear, and spotted sunfish) along the main-stem of the Peace River, a large softwater river located in southwest Florida. A total of 467 electrofishing transects were sampled biannually from spring 2008 to spring 2010. Sampling sites ranged from the headwaters of the Peace River in Polk County, FL to the oligohaline waters located in Charlotte County, FL. All fish were collected with boat mounted electrofishing gear, and aquatic habitat and physiochemical water quality measurements were recorded at …