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COVID-19

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High-Density Blood Transcriptomics Reveals Precision Immune Signatures Of Sars-Cov-2 Infection In Hospitalized Individuals, Jeremy W. Prokop, Nicholas L. Hartog, Dave Chesla, William Faber Jul 2021

High-Density Blood Transcriptomics Reveals Precision Immune Signatures Of Sars-Cov-2 Infection In Hospitalized Individuals, Jeremy W. Prokop, Nicholas L. Hartog, Dave Chesla, William Faber

University Faculty Publications and Creative Works

The immune response to COVID-19 infection is variable. How COVID-19 influences clinical outcomes in hospitalized patients needs to be understood through readily obtainable biological materials, such as blood. We hypothesized that a high-density analysis of host (and pathogen) blood RNA in hospitalized patients with SARS-CoV-2 would provide mechanistic insights into the heterogeneity of response amongst COVID-19 patients when combined with advanced multidimensional bioinformatics for RNA. We enrolled 36 hospitalized COVID-19 patients (11 died) and 15 controls, collecting 74 blood PAXgene RNA tubes at multiple timepoints, one early and in 23 patients after treatment with various therapies. Total RNAseq was performed …