Horticulture Commons^™

Genomic Selection For Yield And Seed Composition Stability In An Applied Soybean Breeding Program, Benjamin Mark Harms

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Stability traits are of primary importance in plant breeding to ensure consistency in phenotype across a range of environments. However, selection efficiency and accuracy for stability traits can be hindered due to the requirement of obtaining phenotype data across multiple years and environments for proper stability analysis. Genomic selection is a method that allows prediction of a phenotype prior to observation in the field using genome-wide marker data and phenotype data from a training population. To assess prediction of stability traits, two elite-yielding soybean populations developed three years apart in the same breeding program were used. The individuals in each …

Meta-Analysis Of The Effects Of Endophytes And Their Secondary Metabolites On Herbivory From Insects, Derrick Taylor

All Theses

Endophyte-infected plants have reduced the level of herbivory. The defense to herbivory can vary due to the metabolites in the plant and the method of feeding from the pest. Secondary metabolites produced by the endophytes are mainly alkaloids. The associations between endophytes and some alkaloid groups are studied in greater detail. The lack of research of certain alkaloid groups ultimately means that some alkaloids had more data that could be analyzed. As a result, the alkaloid groups were not evenly represented in the meta-analysis. The meta-analysis analyzed the relative effectiveness of the metabolites or endophytes in each of the articles …

Multiomic Explorations Of Fruit Texture And Postharvest Quality In Blackberry And Muscadine Grape, Thomas Mason Chizk

Graduate Theses and Dissertations

For most fresh-market fruit crops, texture is an important trait that strongly affects both shipping potential and consumer opinion. Efficient, scalable phenotyping methods are required by breeding programs to effectively select for improvements to fruit texture quality. In muscadine, we have developed a recommendation for characterizing complex muscadine grape texture profiles by comparing the results of breeders’ ratings, descriptive sensory panel results, and an array of instrumental protocols. Regression models were constructed to predict awareness of skins, crispness, hardness, and visual separation explaining 85%, 91%, 82%, and 83% of variance respectively. Genotypes that scored most highly in breeders’ ratings of …

Investigating Effect Of Seed Source And Developing Germination Protocols To Improve Success In Restoration Of Arkansas Tallgrass Prairies, Rhiannon Spencerosa

Graduate Theses and Dissertations

American tallgrass prairie has faced losses estimated at 87-98% of original land area since European settlement. Native seeds are often used to supplement struggling or extinct plant populations in tallgrass prairie restoration and establishment sites. Two main considerations in restoration and establishment are from where to source seed and how to obtain high germination rates. In order to determine the effect of seed source, a common garden experiment was performed in Fayetteville, Arkansas in 2022 with five prairie species: Andropogon gerardii (big bluestem), Bouteloua curtipendula (sideoats grama), Panicum virgatum (switchgrass), Schizachyrium scoparium (little bluestem), and Sorghastrum nutans (Indiangrass). Seed was …

Influence Of Cover Crops On Soybean Yield And Partial Returns As An Alternative To Double-Crop Soybean In Arkansas, Drew Kirkpatrick, Trenton L. Roberts, Kris Brye, Jeremy Ross

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

The number of hectares dedicated to winter wheat (Triticum aestivum L.) in the southern United States has been trending downward for almost a decade, presenting an opportunity for producers to utilize alternatives in their soybean [Glycine max (L.) Merr.] rotations, such as winter cover crops. A study was established to compare the cover crops to traditional cropping systems by determining the effect each had on a successive soybean crop and to examine partial economic returns. Cropping systems implemented were winter fallow, winter wheat, and seven cover crop treatments, including cereal rye (Secale cereale L.), black-seeded oat ( …

A Deep Learning Framework For Processing And Classification Of Hyperspectral Rice Seed Images Grown Under High Day And Night Temperatures, Víctor Díaz-Martínez, Jairo Orozco-Sandoval, Vidya Manian, Balpreet K. Dhatt, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

A framework combining two powerful tools of hyperspectral imaging and deep learning for the processing and classification of hyperspectral images (HSI) of rice seeds is presented. A seed-based approach that trains a three-dimensional convolutional neural network (3D-CNN) using the full seed spectral hypercube for classifying the seed images from high day and high night temperatures, both including a control group, is developed. A pixel-based seed classification approach is implemented using a deep neural network (DNN). The seed and pixel-based deep learning architectures are validated and tested using hyperspectral images from five different rice seed treatments with six different high temperature …

Entropy And Energy Profiles Of Chemical Reactions, Johannes C. B. Dietschreit, Dennis J. Diestler, Rafael Gómez-Bombarelli

Department of Agronomy and Horticulture: Faculty Publications

The description of chemical processes at the molecular level is often facilitated by use of reaction coordinates, or collective variables (CVs). The CV measures the progress of the reaction and allows the construction of profiles that track the evolution of a specific property as the reaction progresses. Whereas CVs are routinely used, especially alongside enhanced sampling techniques, links between profiles and thermodynamic state functions and reaction rate constants are not rigorously exploited. Here, we report a unified treatment of such reaction profiles. Tractable expressions are derived for the free-energy, internal-energy, and entropy profiles as functions of only the CV. We …

Divergent Metabolic Changes In Rhizomes Of Lowland And Upland Switchgrass (Panicum Virgatum) From Early Season Through Dormancy Onset, Nathan A. Palmer, Gautam Sarath, Michael J. Bowman, Aaron J. Saathoff, Serge J. Edmé, Robert B. Mitchell, Christian M. Tobias, Soundararajan Madhavan, Erin D. Scully, Scott E. Sattler

Department of Agronomy and Horticulture: Faculty Publications

High-biomass-yielding southerly adapted switchgrasses (Panicum virgatum L.) frequently suffer from unpredictable winter hardiness at more northerly sites arising from damage to rhizomes that prevent effective spring regrowth. Previously, changes occurring over the growing season in rhizomes sampled from a cold-adapted tetraploid upland cultivar, Summer, demonstrated a role for abscisic acid (ABA), starch accumulation, and transcriptional reprogramming as drivers of dormancy onset and potential keys to rhizome health during winter dormancy. Here, rhizome metabolism of a high-yielding southerly adapted tetraploid switchgrass cultivar, Kanlow—which is a significant source of genetics for yield improvement—was studied over a growing season at a northern …

Herbicide Drift Vs. Crop Resilience – The Influence Of Micro-Rates, Milan Brankov, Bruno Canella Vieira, Miloš Rajković, Milena Simić, Vukadinović Jelena, Violeta Mandić, Vesna Dragičević

Department of Agronomy and Horticulture: Faculty Publications

A greenhouse study was conducted to test the effects of low herbicide dose exposure on different crops measuring visible damages, plant height, leaf area, and dry matter. Seven crops were tested: lettuce (Lactuca sativa L.) cv. Novosadska majska maslena, oil pumpkin (Cucurbita maxima Duch) cv. Olivija, oilseed rape (Brassica napus L.) cv. NS Ras, pepper (Capsicum annuum L.) cv. Kurtovska kapija, soybean (Glycine max (L.) Merr) cv. ZP Laura, sunflower (Helianthus annuus L.) cv. NS Kruna, and tomato (Solanum lycopersicum L.) cv. Dunavski Rubin. Herbicide dicamba in the range of 0.14 to 1 …

Soil Nutrient And Invertase-Producing Bacteria Relation Impact On Cilembu Sweet Potato (Ipomoea Batatas L.) Growth: A Study Based On Upland And Wetland Cultivation In Cilembu Village Sumedang District, Eso Solihin, Syaiful Anwar, Dwi Andreas Santoso, Budi Nugroho, Purwono, Rija Sudirja, Haris Maulana, Nadia Nuraniya Kamaluddin, Agung Karuniawan

Jurnal Kultivasi

Environment is one important factors that must be considered in supporting sweet potato productivity. Environmental factors can be biotic and abiotic, including the availability of nutrients and microbes in the soil. This study aimed to identify the nutrient content of the soil in paddy fields and dry fields, identify the total invertase microorganisms in paddy fields and dry fields, and identify the relationship between soil nutrients and microorganisms during the growth of Cilembu sweet potato in dry and paddy fields agroecosystems. This research was conducted on dry fields and paddy fields in Cilembu Village, Sumedang Regency. The experimental design used …

Effect Of Npk And Bacillus-Coated Npk Fertilizer On Biomass, Nutrient Content In Soil And Nutrient Uptake By Lettuce, Reginawanti Hindersah, Mieke Rochimi Setiawati, Pujawati Suryatmana, Betty Natalie Fitriatin, Fasa Aditya, Gita Bina Nugraha, Rara Rahmatika Risanti, Priyanka Asmiran

Jurnal Kultivasi

The Inoculation of beneficial soil microbes is an effective method for lowering doses of inorganic fertilizers. This study was aimed to observe and compare the effect of doses and formulas of Bacillus-coated NPK (BCN) and conventional NPK fertilizers on biomass, major macro-nutrient in soil and their uptake by shoots of lettuce (Lactuca sativa L.); as well as evaluate the potency of BCN for decreasing doses of NPK fertilizers. The greenhouse experiment was set up in a randomized block design with seven treatments and five replications. The treatments included one and a half doses of recommended NPK fertilizer and two BCN …

Physiological And Canopy Temperature Responses To Drought Of Four Penstemon Species, Ji-Jhong Chen, Youping Sun, Kelly Kopp, Lorence R. Oki, Scott B. Jones, Lawrence Hipps

Plants, Soils, and Climate Faculty Publications

Available water for urban landscape irrigation is likely to become more limited because of inadequate precipitation and the ever-increasing water demand of a growing population. Recent droughts in the western United States have also increased the demand for low-water-use landscapes in urban areas. Penstemon species (beardtongues) are ornamental perennials commonly grown in low-water-use landscapes, but their drought tolerance has not been widely investigated. The objectives of this study were to determine the effects of water availability on the morphology, physiology, and canopy temperature of Penstemon barbatus (Cav.) Roth ‘Novapenblu’ (Rock Candy Blue^® penstemon), P. digitalis Nutt. ex Sims ‘TNPENDB’ …

The Effect Of Herbicide Glufosinate Ammonium 150 G/L Dose On Several Weeds And Potatoes (Solanum Tuberosum L.) Yield, Denny Kurniadie, Yayan Sumekar, Chika Valent

Jurnal Kultivasi

In the last three years, potato production in Indonesia fluctuated every year. One of the factors that cause low productivity of potatoes is weed. The presence of weeds in potato planting areas can inhibit plant growth and affect potato yields. The aim of this study is to determine the effectiveness of herbicide glufosinate ammonium 150 g/L to control common weeds in potato plants. This research was conducted in a farmer field in Lebak Muncang Village, Ciwidey District, Bandung Regency, West Java Province. The experimental design used was a randomized block design with six treatments and four replications. Weed control using …

Chile Pepper Variety Evaluation And Profitability Analysis At Three Farms In Minnesota And Wisconsin, 2022, Natalie Hoidal, Charlie Rohwer, Ryan Pesch, Rodrigo Cala, Javier García, Griselda Bernabe Suarez, Fernando Alejandro García Loyo

Midwest Vegetable Trial Reports

Latino fresh market vegetable farmers in Minnesota and Wisconsin are interested in growing hot peppers for local markets, both for fresh and dried pepper sales. This variety trial is the third and final trial of a 3 year project. We trialed 14 varieties of peppers representing jalapeño, serrano, habanero, poblano, and “other” types. The varieties included the top varieties from 2020 and 2021, alongside new varieties. We measured yield, fruit size, and Scoville heat units. In addition to the variety trial, we conducted an enterprise analysis to determine the profitability of hot pepper production in the Upper Midwest.

Effectiveness Of Water Hyacinth Compost And N, P, K, S Fertilizer On S-Available, S Uptake, Protein Content, And Yield Of Shallot In Inceptisols From Jatinangor, Emma Trinurani Sofyan, Fajar Akbar Gumelar, Anni Yuniarti, Benny Joy, Fiky Yulianto Wicaksono

Jurnal Kultivasi

. Water hyacinth (Eichhornia crassipes) is a source of organic matter that can be used as compost to improve the soil quality and productivity of shallots. Shallots are horticultural commodities that have various benefits. Inceptisol soils dominate Indonesia, with an area of 37.5% of Indonesia's land area but have low soil fertility. Soil fertility can be increased by optimal fertilization. This experiment aimed to determine the dose of water hyacinth compost and nitrogen (N), phosphor (P), potassium (K), sulfur (S) fertilizer which gave the best effect on increasing available S, S uptake, protein content, and yield of shallots. The experiment …

Total Soluble Solid And Titratable Acidity In Different Fruit Maturation Stages Of Solanum Lycopersicum Cv. Micro-Tom And Its Mutant Iaa9-3 And Iaa9-5, Zulfatunnisa, Syariful Mubarok, Kusumiyati

Jurnal Kultivasi

Fruit development influences the metabolite contents and then its biological activity; however, such report is still limited in tomato IAA9 mutants. This study aims to evaluate total soluble solid and titratable acidity in several stages of fruit maturation of the mutant micro-tom tomato. The experimental method used is the t-test method with three replications and followed by correlation and principal component analysis. The tested genotype were iaa9-3 and iaa9-5 mutants against WT-MT. Pearson correlation analysis showed that iaa9-3 and iaa9-5 produced higher levels of total soluble solid and titratable acidity in different fruit maturity levels; and the increase of flowering …

Late Postemergence Glufosinate-Based Programs For Glyphosate-Resistant Palmer Amaranth Control In Dicamba/Glufosinate/Glyphosate-Resistant Soybean, Vipan Kumar, Jatinder S. Aulakh, Rui Liu, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

Glyphosate-resistant (GR) Palmer amaranth (Amaranthus palmeri S. Watson) is widespread in the Central Great Plains. Introduction of newly developed dicamba/glufosinate/glyphosate (DGG)-resistant soybean varieties allows postemergence (POST) applications of dicamba and glufosinate for in-season control of GR Palmer amaranth. Limited information exists on the effectiveness of glufosinate applied late-POST for tall (70–90 cm) GR Palmer amaranth control in DGG-resistant soybean. The objectives of this study were to (1) determine the effectiveness of late-POST glufosinate-based programs for GR Palmer amaranth control, and (2) determine the impact of those programs on soybeans grain yields. Ten glufosinatebased programs were tested in a field …

Evaluación Y Rentabilidad De Variedades De Chile En Tres Granjas De Minnesota Y Wisconsin, 2022, Natalie Hoidal, Charlie Rohwer, Ryan Pesch, Rodrigo Cala, Javier García, Griselda Bernabe Suarez, Fernando Alejandro García Loyo

Midwest Vegetable Trial Reports

Los agricultores latinos de hortalizas frescas de Minnesota y Wisconsin están interesados en cultivar chiles picantes tanto frescos como deshidratados para su venta en mercados locales. Este ensayo de variedades es el tercero y último de un proyecto de tres años de duración. El ensayo incluyo 14 variedades de chile incluyendo jalapeño, serrano, habanero, poblano y "otros" tipos. Las variedades incluyeron las mejores variedades de 2020 y 2021 junto con nuevas variedades. Calculamos el rendimiento, tamaño y las unidades Scoville. Además del ensayo de variedades, realizamos un análisis empresarial para determinar la rentabilidad de la producción de chiles picantes en …

Evaluating Form And Function Of Groundcovers And Their Environmental Impacts In Louisiana Landscapes, Thomas Maxwell Mckeown

LSU Master's Theses

Increasing environmental concerns are encouraging the adoption of sustainable landscapes that have environmental, social, and financial benefits. Ornamental groundcover systems are touted as sustainable landscape features due to the associated decreased demand of water, fertilizer, pesticide, and maintenance; however, limited research exists on soil property effects, planting density, weed density, or consumer preferences of groundcovers. This study was aimed to gain a more thorough understanding of ornamental groundcovers systems and their environmental impacts. The effects of groundcover growth habit (matting; bunching) and irrigation delivery (micro spray; overhead) on soil temperature, volumetric water content (VWC), and electric conductivity (EC) along with …

A Leaf-Level Spectral Library To Support High-Throughput Plant Phenotyping: Predictive Accuracy And Model Transfer, Nuwan K. Wijewardane, Huichun Zhang, Jinliang Yang, James C. Schnable, Daniel P. Schachtman, Yufeng Ge

Department of Agronomy and Horticulture: Faculty Publications

Leaf-level hyperspectral reflectance has become an effective tool for high-throughput phenotyping of plant leaf traits due to its rapid, low-cost, multi-sensing, and non-destructive nature. However, collecting samples for model calibration can still be expensive, and models show poor transferability among different datasets. This study had three specific objectives: first, to assemble a large library of leaf hyperspectral data (n=2460) from maize and sorghum; second, to evaluate two machine-learning approaches to estimate nine leaf properties (chlorophyll, thickness, water content, nitrogen, phosphorus, potassium, calcium, magnesium, and sulfur); and third, to investigate the usefulness of this spectral library for predicting external datasets …

Evaluating Species-Specific Replenishment Solution Effects On Plant Growth And Root Zone Nutrients With Hydroponic Arugula (Eruca Sativa L.) And Basil (Ocimum Basilicum L.), Lauren L. Houston, Ryan W. Dickson, Matthew B. Bertucci, Trenton L. Roberts

Horticulture Faculty Publications and Presentations

Managing nutrients in recirculating solutions can be challenging in hydroponic production, and poor management practices can rapidly result in root zone nutrient imbalances in reduced yield. Using mass balance principles to formulate hydroponic replenishment solutions is a proposed strategy to reduce nutrient imbalances and the need to periodically replace the hydroponic solution. Objectives were to (1) formulate species-specific nutrient replenishment solutions for arugula (Eruca sativa L.) and basil (Ocimum basilicum L.) using mass balance principles and (2) evaluate the effects of using these replenishment solutions on plant growth and root zone nutrients over time. In the first experiment, …

Experimentation On Nebraska Farms For Sustaining Soil Health Management, Fernanda Souza Krupek

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Soil health management practices have increasingly been promoted across US agroecosystems to address many interrelated environmental and economic food system challenges. Sustaining conservation behavior – through farmer’s adoption and continued use of practices – is key for achieving many soil health-related intended social-ecological benefits. Using a range of scientific methods, from lab-based experiments to on-farm research to farmer interviews, the overall objective of this dissertation research was to explore soil and human dimension considerations to design farming and knowledge transfer systems for sustaining soil health management in the US Midwest. In a multivariate analysis of ten on-farm research sites, we …

Arkansas Cotton Variety Test 2022, F. Bourland, A. Beach, B. Milano, B. Guest, C. Kennedy, L. Martin, B. Robertson

Arkansas Agricultural Experiment Station Research Series

The primary goal of the Arkansas Cotton Variety Test is to provide unbiased data regarding the agronomic performance of cotton varieties and advanced breeding lines in the major cotton-growing areas of Arkansas. This information helps seed companies establish marketing strategies and assists producers in choosing varieties to plant. These annual evaluations will then facilitate the inclusion of new, improved genetic material in Arkansas cotton production. Adaptation of varieties is determined by evaluating the lines at five University of Arkansas System Division of Agriculture research sites (Manila, Keiser, Judd Hill, Marianna, and Rohwer). The 2022 tests at Rohwer were adversely affected …

Ranunculus Cut Flower Production In Utah, Shannon Rauter, Melanie Stock

All Current Publications

Ranunculus (Ranunculus asiaticus) is grown as a cool-season annual for cut flower production in Utah. Tuberous roots can be planted as early as November in a high tunnel for blooms beginning in April. For field production, plant in November with insulation or as early as possible in spring for blooms beginning in May. Flower production ceases when temperatures reach approximately 80°F, usually by early July in northern Utah. In North Logan, UT, high tunnels produced an average of 3 to 7 marketable stems per plant, compared to 1 to 2 stems per plant in the field. Profit potential …

Anemone Cut Flower Production In Utah, Shannon Rauter, Melanie Stock

All Current Publications

Anemone (Anemone coronaria) is grown as a cool-season annual for cut flower production in Utah. Tubers can be planted as early as November in a high tunnel for blooms beginning in March. For field production, plant in fall with insulation or as early as possible in spring (i.e., the soil is workable, approximately early March) for blooms beginning in May. Flower production ceases when temperatures reach approximately 80°F, usually by early July in northern Utah. In North Logan, UT, high tunnels produced an average of 2 to 7 marketable stems per plant, compared to 1 to 4 stems …

Establishment Of Wildflower Islands To Enhance Roadside Health, Ecological Value, And Aesthetics Phase Ii, Jackson Ebbers, Heidi L. Hillhouse, John A. Guretsky, Thomas J. Weissling

Nebraska Department of Transportation: Research Reports

No abstract provided.

Predicting Site‑Specific Economic Optimal Nitrogen Rate Using Machine Learning Methods And On‑Farm Precision Experimentation, Alfonso De Lara, Taro Mieno, Joe D. Luck, Laila A. Puntel

Department of Agronomy and Horticulture: Faculty Publications

Applying at the economic optimal nitrogen rate (EONR) has the potential to increase nitrogen (N) fertilization efficiency and profits while reducing negative environmental impacts. On-farm precision experimentation (OFPE) provides the opportunity to collect large amounts of data to estimate the EONR. Machine learning (ML) methods such as generalized additive models (GAM) and random forest (RF) are promising methods for estimating yields and EONR. Twenty OFPE N trials in wheat and barley were conducted and analyzed with soil, terrain and remote-sensed variables to address the following objectives: (1) to quantify the spatial variability of winter crops yield and the yield response …

A Plea For Scale, And Why It Matters For Invasive Species Management, Biodiversity And Conservation, Nicholas A. Mcmillan, Samuel D. Fuhlendorf, Craig A. Davis, Robert G. Hamilton, Landon. K. Neumann, Samantha M. Cady

Department of Agronomy and Horticulture: Faculty Publications

1. Invasive species are suspected to be major contributors to biodiversity declines worldwide. Counterintuitively, however, invasive species effects are likely scale dependent and are hypothesized to be positively related to biodiversity at large spatial scales. Past studies investigating the effect of invasion on biodiversity have been mostly conducted at small scales (<100 m²) that cannot represent large dynamic landscapes by design. Therefore, replicated experimental evidence supporting a negative effect of invasive plants on biodiversity is lacking across many landscape types, including large grasslands.

2. We collected data across eight large (333–809 ha) grassland landscapes managed with pyric herbivory—that is the recoupling …

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Soil Depth And Geographic Distance Modulate Bacterial Β-Diversity In Deep Soil Profiles Throughout The U.S. Corn Belt, Lucas Dantas Lopes, Stephanie L. Futrell, Emily E. Wright, Gerasimos J. Danalatos, Michael J. Castellano, Tony J. Vyn, Sotirios V. Archontoulis, Daniel P. Schachtman

Department of Agronomy and Horticulture: Faculty Publications

Understanding how microbial communities are shaped across spatial dimensions is of fundamental importance in microbial ecology. However, most studies on soil biogeography have focused on the topsoil microbiome, while the factors driving the subsoil microbiome distribution are largely unknown. Here we used 16S rRNA amplicon sequencing to analyse the factors underlying the bacterial β-diversity along vertical (0–240 cm of soil depth) and horizontal spatial dimensions (~500,000 km²) in the U.S. Corn Belt. With these data we tested whether the horizontal or vertical spatial variation had stronger impacts on the taxonomic (Bray-Curtis) and phylogenetic (weighted Unifrac) β-diversity. Additionally, we …

Graph Convolutional Network Using Adaptive Neighborhood Laplacian Matrix For Hyperspectral Images With Application To Rice Seed Image Classification, Jairo Orozco, Vidya Manian, Estefania Alfaro, Harkamal Walia, Balpreet K. Dhatt

Department of Agronomy and Horticulture: Faculty Publications

Graph convolutional neural network architectures combine feature extraction and convolutional layers for hyperspectral image classification. An adaptive neighborhood aggregation method based on statistical variance integrating the spatial information along with the spectral signature of the pixels is proposed for improving graph convolutional network classification of hyperspectral images. The spatial-spectral information is integrated into the adjacency matrix and processed by a single-layer graph convolutional network. The algorithm employs an adaptive neighborhood selection criteria conditioned by the class it belongs to. Compared to fixed window-based feature extraction, this method proves effective in capturing the spectral and spatial features with variable pixel neighborhood …