Botany Commons^™

Next-Generation Field Guides, Elizabeth J. Farnsworth, Miyoko Chu, W. John Kress, Amanda K. Neill, Jason H. Best, John Pickering, Robert D. Stevenson, Gregory W. Courtney, John K. Vandyk, Aaron M. Ellison

John K. VanDyk

To conserve species, we must first identify them. Field researchers, land managers, educators, and citizen scientists need up-to-date and accessible tools to identify organisms, organize data, and share observations. Emerging technologies complement traditional, book-form field guides by providing users with a wealth of multimedia data. We review technical innovations of next-generation field guides, including Web-based and stand-alone applications, interactive multiple-access keys, visual-recognition software adapted to identify organisms, species checklists that can be customized to particular sites, online communities in which people share species observations, and the use of crowdsourced data to refine machine-based identification algorithms. Next-generation field guides are user …

Natural History Collections: Connecting With Faculty And Content, Stacey Knight-Davis, Todd A. Bruns

Stacey Knight-Davis

For well over a century, American biologists have built collection of plants, animals, fungi, insects, and other natural materials. Often, these collections serve as a record of the unique biodiversity of the local area and provide a record of change over time. Many taxonomic, genetic, and environmental discoveries lay waiting in the drawers and cupboards in which these specimens are stored. / / Uploading images of natural history specimens to Digital Commons allows them to be easily discovered in with a web search, leading the user back to the home collection. As an example, a search for 'big leaf magnolia …

Systematics Of The Lobulomycetales, A New Order Within The Chytridiomycota, David Rabern Simmons

David Simmons

Based on molecular phylogenetic analyses, the polyphyletic order Chytridiales, one of the four orders in the Chytridiomycota, contains several well-supported clades. One species, Chytriomyces angularis, however, does not group within the robust clades of the Chytridiales or any other chytrid order. The light-level morphology and zoospore ultrastructure of this aquatic species also differ from those of the type species of the genus Chytriomyces. I amassed nine additional pure culture isolates of soil-inhabiting chytrids with morphologies or rDNA sequences similar to C. angularis, including two isolates of C. poculatus, and studied the molecular phylogeny of these ten chytrids. Results of the …

Documenting Effects Of Urbanization On Flora Using Herbarium Records, Rebecca W. Dolan, Marcia E. Moore, Jessica Stephens

Rebecca W. Dolan

As human populations increasingly live in cities, urban floras and the ecosystem services they provide are under increasing threat. Understanding the effects of urbanization on plants can help to predict future changes and identify ways to preserve biological diversity. Relatively few studies document changes through time in the flora of a focal region and those that do primarily address European floras. They often rely on contemporary spatial gradient studies as surrogates for changes with time. We compare historical species records (prior to 1940) with the current flora for Marion County, Indiana, USA, home to Indianapolis, the 13th largest city in …

Weed Seed Germplasm Collection 1964-2014 Of The Weed Biology Laboratory, Jack Dekker

Jack Dekker

J. Dekker weed seed germplasm collection; including: Lots 1-3974: 1964-2014; main seed library listed by lot numbers. Lots 649-1457: 1989 all-Iowa Setaria transect study. Lots 1762-1812: 1981; Diane Manthey, North Dakota St. Univ., Setaria collection at Bob Anderson's (USDA, Univ. of Minn) 1960's wild oat study sites. Lots 2389-2595: 1992 north temperate world collection (Japan, Russia, Europe) by J. Dekker. Lots 3270-3685: 1993 Brent Reschly transect study of eastern Iowa conventional and Amish farmers. Lots 3786-3962: 2000 J. Dekker 2000 salt-tolerant Setaria of southern Japan collection. All seed in all these collections belong, and were collected and archived by Jack …

Population Dynamics Of Ludwigia Leptocarpa (Onagraceae) And Some Factors Affecting Size Hierarchies In A Natural Population, Rebecca W. Dolan, Rebecca R. Sharitz

Rebecca W. Dolan

Germination cohorts of Ludwigia leptocarpa, a semi-aquatic annual plant were marked in the field at time of establishment and followed through the 1981 and 1982 growing seasons at a site in southern South Carolina. Data from each cohort were pooled to determine demographic characteristics of the population as a whole, then analyzed separately to determine the effect of time on germination on survivorship, relative growth rate, and adult size. Changes in numbers of L. leptocarpa fit a Deevey Type II survivorship curve. This and other characteristics of the species classify it as ‘r-selected’. Aspects of the life history may reflect …

Wild Rides And Wildflowers: Philosophy And Botany With Bikes, Scott Abbott, Sam Rushforth

Scott Abbott

This book bears only passing resemblance to any book we have read to date. We hope it is comical, perhaps in ways that will remind readers of NPR’s “Car Talk,” where listeners share the good natured and sometimes acidic banter between brothers who also know a lot about cars. We hope it is moving, not in the extended ways Terry Tempest Williams often achieves, but through surprising comments and stories that accompany the bike rides and that, over the course of four years, add up to a larger picture. We hope it is informative, not in the comprehensive way John …

Maine's Kelp Highway, Catherine Schmitt

Catherine Schmitt

No abstract provided.

Another Look At The Root Of The Angiosperms Reveals A Familiar Tale, Bryan Drew, Brad Ruhfel, Stephen Smith, Michael Moore, Barbara Briggs, Matthew Gitzendanner, Pamela Soltis, Douglas Soltis

Brad R. Ruhfel

Since the advent of molecular phylogenetics more than 25 years ago, a major goal of plant systematists has been to discern the root of the angiosperms. Although most studies indicate that Amborella trichopoda is sister to all remaining extant flowering plants, support for this position has varied with respect to both the sequence data sets and analyses employed. Recently, Goremykin et al. (2013) questioned the “Amborella-sister hypothesis” using a “noise-reduction” approach and reported a topology with Amborella + Nymphaeales (water lilies) sister to all remaining angiosperms. Through a series of analyses of both plastid genomes and mitochondrial genes, we continue …

A Global Analysis Of The Impacts Of Urbanization On Bird And Plant Diversity Reveals Key Anthropogenic Drivers, Myla F.J. Aronson, Frank A. La Sorte, Charles H. Nilon, Madhusudan Katti, Mark A. Goddard, Christopher A. Lepczyk, Paige S. Warren, Nicholas S.G. Williams, Sarel Cilliers, Bruce Clarkson, Cynnamon Dobbs, Rebecca W. Dolan, Marcus Hedblom, Stefan Klotz, Jip Louwe Kooijmans, Ingolf Kühn, Ian Macgregor-Fors, Mark Mcdonnell, Ulla Mörtberg, Petr Pyšek, Stefan Siebert, Jessica Sushinsky, Peter Werner, Marten Winter

Rebecca W. Dolan

Urbanization contributes to the loss of the world's biodiversity and the homogenization of its biota. However, comparative studies of urban biodiversity leading to robust generalities of the status and drivers of biodiversity in cities at the global scale are lacking. Here, we compiled the largest global dataset to date of two diverse taxa in cities: birds (54 cities) and plants (110 cities). We found that the majority of urban bird and plant species are native in the world's cities. Few plants and birds are cosmopolitan, the most common beingColumba livia and Poa annua. The density of bird and plant species …

Digitization Of Herbarium Specimens, A Collaborative Process, Lawrence Schmidt

Larry O Schmidt

Digital collections in museums, libraries, and other agencies are expanding rapidly. Digitization of books, maps, photographs, and other objects for both preservation and dissemination are changing the way libraries work. Librarians who have, historically, worked with collections in print formats are anxious to move toward digital content as the wave of the future. Rather than stand on the sidelines and watch as the digital movement passes by, librarians need to be proactive and create digital content using both collections within the libraries’ walls and proactively seek opportunities to work collaboratively with stakeholders outside of the libraries’ hallowed halls. The creation …

Resolution Of Deep Nodes Yields An Improved Backbone Phylogeny And A New Basal Lineage To Study Early Evolution Of Asteraceae, Jose L. Panero, Susana E. Freire, Luis Ariza Espinar, Bonnie S. Crozier, Gloria E. Barboza, Juan J. Cantero

Jose L. Panero

A backbone phylogeny that fully resolves all subfamily and deeper nodes of Asteraceae was constructed using 14 chloroplast DNA loci. The recently named genus Famatinanthus was found to be sister to the Mutisioideae–Asteroideae clade that represents more than 99% of Asteraceae and was found to have the two chloroplast inversions present in all Asteraceae except the nine genera of Barnadesioideae. A monotypic subfamily Famatinanthoideae and tribe Famatinantheae are named herein as new. Relation- ships among the basal lineages of the family were resolved with strong support in the Bayesian analysis as (Barnadesioideae (Famatinanthoideae (Mutisioideae (Stifftioideae (Wunderlichioideae– Asteroideae))))). Ancestral state reconstruction …

Synthesis And Future Directions: What Have Harsh Environments Taught Us About Ecology, Evolution, Conservation, And Restoration?, Nishanta Rajakaruna, Robert S. Boyd, Tanner B. Harris

Nishanta Rajakaruna

No abstract provided.

Additional Lichen Records And Minerological Data From Metal-Contaminated Sites In Maine, Ian D. Medeiros, Alan M. Fryday, Nishanta Rajakaruna

Nishanta Rajakaruna

Geochemistry and mineralogy of rocks play important roles in the occurrence of individual lichen species and assembly of lichen communities. Whereas lichens of metal-enriched settings have been a focus of study for many decades, only a few such lichen inventories exist for North America. We reexamined the lichen biota of Pine Hill, a serpentine outcrop on Little Deer Isle, Maine and Callahan Mine, a copper- and zinc-enriched Superfund site in Brooksville, Maine by conducting additional field surveys and reexamining unidentified taxa from previous collections. To better characterize the substrates upon which the lichens were found, we conducted elemental analyses via …

Different Meal, Same Flavor: Cospeciation And Host Switching Of Haemosporidian Parasites In Some Non-Passerine Birds, Diego Santiago-Alarcon, Adriana Rodríguez-Ferraro, Patricia G. Parker, Robert E. Ricklefs

Robert Ricklefs

Different Meal, Same Flavor: Cospeciation And Host Switching Of Haemosporidian Parasites In Some Non-Passerine Birds, Diego Santiago-Alarcon, Adriana Rodríguez-Ferraro, Patricia G. Parker, Robert E. Ricklefs

Patricia Parker