Agronomy and Crop Sciences Commons^™

Transformation And Gene Editing In The Bioenergy Grass Miscanthus, Anthony Trieu, Mohammad B. Belaff, Pradeepa Hirannaiah, Shilpa Manjunatha, Rebekah Wood, Yokshitha Bathula, Rebecca L. Billingsley, Anjali Arpan, Erik J. Sacks, Thomas E. Clemente, Stephen P. Moose, Nancy A. Reichert, Kankshita Swaminathan

Department of Agronomy and Horticulture: Faculty Publications

Background: Miscanthus, a C4 member of Poaceae, is a promising perennial crop for bioenergy, renewable bioproducts, and carbon sequestration. Species of interest include nothospecies M. x giganteus and its parental species M. sacchariforus and M. sinensis. Use of biotechnology-based procedures to genetically improve Miscanthus, to date, have only included plant transformation procedures for introduction of exogenous genes into the host genome at random, non-targeted sites.

Results: We developed gene editing procedures for Miscanthus using CRISPR/Cas9 that enabled the mutation of a specific (targeted) endogenous gene to knock out its function. Classified as paleo-allopolyploids (duplicated ancient …

New Semi-Dwarfing Alleles With Increased Coleoptile Length By Gene Editing Of Gibberellin 3-Oxidase 1 Using Crispr-Cas9 In Barley (Hordeum Vulgare L.), Jingye Cheng, Camilla Hill, Yong Han, Tianhua He, Xingguo Ye, Sergey Shabala, Ganggang Guo, Meixue Zhou, Ke Wang, Chengdao Li

Grain and Other Field Crops Research Articles

The green revolution was based on genetic modification of the gibberellin (GA) hormone system with “dwarfing” gene mutations that reduces GA signals, conferring shorter stature, thus enabling plant adaptation to modern farming conditions. Strong GA-related mutants with shorter stature often have reduced coleoptile length, discounting yield gain due to their unsatisfactory seedling emergence under drought conditions. Here we present gibberellin (GA) 3-oxidase1 (GA3ox1) as an alternative semi-dwarfing gene in barley that combines an optimal reduction in plant height without restricting coleoptile and seedling growth. Using large-scale field trials with an extensive collection of barley accessions, we showed that a natural …

Yield Prediction Through Integration Of Genetic, Environment, And Management Data Through Deep Learning, Daniel R. Kick, Jason G. Wallace, James C. Schnable, Judith M. Kolkman, Barış Alaca, Timothy M. Beissinger, Jode Edwards, David Ertl, Sherry Flint-Garcia, Joseph L. Gage, Candice N. Hirsch, Joseph E. Knoll, Natalia De Leon, Dayane C. Lima, Danilo E. Moreta, Maninder P. Singh, Addie Thompson, Teclemariam Weldekidan, Jacob D. Washburn

Department of Agronomy and Horticulture: Faculty Publications

Accurate prediction of the phenotypic outcomes produced by different combinations of genotypes, environments, and management interventions remains a key goal in biology with direct applications to agriculture, research, and conservation. The past decades have seen an expansion of new methods applied toward this goal. Here we predict maize yield using deep neural networks, compare the efficacy of 2 model development methods, and contextualize model performance using conventional linear and machine learning models. We examine the usefulness of incorporating interactions between disparate data types. We find deep learning and best linear unbiased predictor (BLUP) models with interactions had the best overall …

Genetic Variation In Common Bunt Resistance In Synthetic Hexaploid Wheat, Amira M. I. Mourad, Alexey Morgounov, P. Stephen Baenziger, Samar M. Esmail

Department of Agronomy and Horticulture: Faculty Publications

Common bunt (caused by Tilletia caries and T. Foetida) is a major wheat disease. It occurs frequently in the USA and Turkey and damages grain yield and quality. Seed treatment with fungicides is an effective method to control this disease. However, using fungicides in organic and low-income fields is forbidden, and planting resistant cultivars are preferred. Due to the highly effective use of fungicides, little effort has been put into breeding resistant genotypes. In addition, the genetic diversity for this trait is low in modern wheat germplasm. Synthetic wheat genotypes were reported as an effective source to increase the …

Is There An Economic Advantage To Planting Diverse Summer Annual Forage Mixtures?, Kelly Mercier, Chris Teutsch, Ray Smith, Kenny Burdine, Edwin Ritchey, Eric Vanzant

Journal of Extension

This study examined economic implications of planting summer annual mixtures of grasses, legumes, and forbs at varying nitrogen rates. No differences in yield occurred between the three mixtures, indicating that mixtures with lowest seed cost will be most economical. Applying N resulted in yield increases of 12.26 lb DM per lb N applied. Although yield responses to N were positive, sensitivity analyses showed that applying N resulted in positive net returns only when hay prices were high and N prices were low. When utilization rates are accounted for, enterprise budgets determined grazing to be 18% cheaper to implement than haying.

Inheritance Of 2,4‑Dichlorophenoxyacetic Acid (2,4‑D) Resistance In Amaranthus Palmeri, Chandrima Shyam, Dallas E. Peterson, Amit J. Jhala, Mithila Jugulam

Department of Agronomy and Horticulture: Faculty Publications

In this study, the inheritance of 2,4-D resistance in a multiple herbicide-resistant Palmer amaranth (KCTR) was investigated. Direct and reciprocal crosses were performed using 2,4-D-resistant KCTR and susceptible KSS plants to generate F₁ progenies. 2,4-D dose–response assays were conducted to evaluate the response of progenies from each F₁ family along with KCTR and KSS plants in controlled environmental growth chambers. Additionally, 2,4-D-resistant male and female plants from each of the F₁ families were used in pairwise crosses to generate pseudo-F₂ families. Segregation (resistance or susceptibility) of progenies from the F₂ families in response to a …

Comparison Of Maize Hybrids For Production Of Quality Fodder And Silage In Faisalabad, Punjab, Pakistan, Ali Hamed, Muhammad Shahid Ibni Zamir, Asif Tanveer, Muhammad Yaseen

Journal of Bioresource Management

Fodder crops have to compete with those of field crops, and the majority of farmers are smallholders in the circumstances of Pakistan. Therefore, this study was planned to search for the best maize hybrid which would serve dual purposes, i.e. for grain production as well as its later usage as fodder and silage. So, seven maize hybrids most commonly grown in the vicinity were selected and compared for their forage production. Maize hybrids were sown on ridges followed by all cultural operations as carried out by farmers. At harvest, plant morphological parameters were measured before ensiling the whole maize plant. …

A Stealth Health Approach To Dietary Fibre, P. Stephen Baenziger, Katherine Anna Frels, Steve Greenspan, Julie Jones, Alison Lovegrove, Devin J. Rose, Peter Shewry, Rod Wallace

Department of Agronomy and Horticulture: Faculty Publications

Average dietary fibre intakes have increased little in the past twenty years in many countries, including the USA¹ . Multi-million-dollar campaigns promoting fruits, vegetables, whole grains and other foods high in fibre have delivered only small changes in diets² , and consumers have not changed from traditional staples to whole-grain options³ . UK millers report that consumption of whole-wheat bread has actually declined over the past decade (P. Shewry, personal communication). In the US, white flour, which is lower in fibre than whole-wheat flour, accounts for nearly 40% of the fibre intake⁴ . We believe that …

Korelasi Hasil Padi Sawah Dengan Sulfur Tersedia Dan Sifat Kimia Tanah Sawah, Purwandaru Widyasunu, Rosi Widarawati

Jurnal Kultivasi

Pemberian belerang dapat digunakan untuk mengatur sifat kimia tanah sawah. Penelitian ini bertujuan untuk mengetahui: (1) distribusi unsur hara S tanah di lahan sawah yang digunakan untuk budidaya tanaman padi sawah, (2) sifat kimia tanah meliputi pH H2O, pH KCl, Potensial redoks dan DHL (Daya Hantar Listrik) pada lahan sawah, (3) hubungan S-tersedia, sifat kimia tanah, dengan hasil tanaman. Penelitian dilaksanakan di lahan sawah di Sub DAS Serayu Hilir Wilayah Kecamatan Maos, Kabupaten Cilacap dengan ketinggian tempat 8 m dpl dan Laboratorium Ilmu Tanah, Fakultas Pertanian, Universitas Jenderal Soedirman pada Juni hingga September 2021. Penelitian ini dilakukan dengan metode survei …

Studi Pendahuluan Regenerasi Eksplan Teh Sebagai Upaya Percepatan Penyediaan Bibit Unggul Secara In Vitro, Intan Ratna Dewi Anjarsari, Erni Suminar, Murgayanti

Jurnal Kultivasi

Pembiakan generatif tanaman teh yang dilakukan dengan biji, sementara secara vegetatif dengan setek tunas yang mempunyai kelemahan, antara lain jumlah bibit yang dihasilkan terbatas, perlu waktu lama untuk menyeleksi pohon induk, dan bibit yang dihasilkan kurang optimal dalam penyerapan air dan unsur hara karena perakarannya dangkal sehingga kurang toleran terhadap kekeringan. Kultur jaringan menjadi salah satu alternatif dalam perbanyakan teh memperoleh klon teh unggul, seperti klon Seri Gambung 1-11, dalam jumlah banyak dan sifatnya yang seragam. Penelitian pendahuluan ini dilaksanakan di Laboratorium Kultur Jaringan Departemen Budidaya Pertanian Fakultas Pertanian UNPAD, mulai bulan Juni hingga Desember 2021. Penelitian terdiri dari dua …

Aplikasi Kalium Klorida Pada Dosis Yang Berbeda Secara Fertigasi Tetes Untuk Meningkatkan Pertumbuhan Dan Hasil Bawang Merah, Alfu Laila, Nur Iman Muztahidin, Dwiki Radinal, Andi Apriany Fatmawaty, Nuniek Hermita

Jurnal Kultivasi

Budidaya bawang merah (Allium cepa L.) di Provinsi Banten terhambat oleh masalah kekurangan air karena diusahakan di lahan kering. Oleh karena hal tersebut, kami mengevaluasi pengaruh pemberian kalium klorida (KCl) melalui fertigasi tetes untuk efisiensi penggunaan air dan nutrisi pada budidaya bawang merah di lahan kering Banten. Penelitian polybag dilaksanakan dengan rancangan acak kelompok lengkap (RAKL) dengan 4 ulangan sebagai blok. Perlakuan terdiri dari dosis KCl dengan system fertigasi tetes yakni 50, 75, 100, 125 dan 150% dari dosis rekomendasi KCl untuk Provinsi Banten dan aplikasi KCl dengan sistem irigasi konvensional sesuai dosis rekomendasi sebagai kontrol. Hasil penelitian menunjukkan bahwa …

Respons Pertumbuhan Biomassa Bagian Atas Bibit Kelapa Sawit Akibat Pemberian Kompos Pelepah Kelapa Sawit, Pupuk Hayati, Dan Asam Humat, Mira Ariyanti, Esnakelga Bernadetha Keliat, Cucu Suherman, Santi Rosniawaty, Mochamad Arief Soleh

Jurnal Kultivasi

Pemberian pupuk anorganik dapat meningkatkan pertumbuhan tanaman, tetapi penggunaan secara terus menerus menyebabkan dampak kurang baik bagi tanaman dan lingkungan pertanaman. Penelitian ini berkaitan dengan pentingnya penggunaan pupuk organik dalam mengurangi penggunaan pupuk anorganik sebagai salah satu langkah untuk mewujudkan perkebunan kelapa sawit (Elaeis guineensis Jacq.) yang berkelanjutan. Tujuan penelitian ini adalah untuk mengetahui respons pertumbuhan biomassa bagian atas bibit kelapa sawit akibat pemberian kompos pelepah kelapa sawit yang dikombinasikan dengan pupuk hayati dan asam humat. Percobaan dilaksanakan di Kebun Percobaan Ciparanje, Fakultas Pertanian, Universitas Padjadjaran pada bulan Januari – Juli 2020. Penelitian disusun menggunakan Rancangan Acak Kelompok (RAK) dengan …

Aspectos De La Investigación Del Cacao En Municipios De La Zona Del Tequendama, Jenny Paola Moreno Lopez, Laguandio Del Cristo Banda Sánchez, Arlette Ivone Gil Clavijo, Diego Orlando Méndez Pineda, Fabián Giovanny Marquez Niño

Ciencias Agropecuarias

El mejoramiento del manejo fitosanitario en producciones de cacao (Theobrorna cacao L) involucra el uso de alternativas amigables como los productos a base de plantas con actividad antimicrobiana tal es el caso del género Piper. Esta investigación buscó cuantificar las enfermedades presentes en plantaciones de cacao en municipios de la región del Tequendama Cundinamarca-Colombia y evaluar aspectos eco fisiológicos de Piper SP. Se trabajó en seis fincas de la Asociación de Cacaoteros del Bajo Tequendama en Viotá, Anapoima y Tocaima. Se evaluó la incidencia y severidad de las enfermedades y se generaron mapas de calor. Se tomaron muestras vegetales sintomáticas …

Genetic Variations Of Narcissus Tazetta And Selected Narcissus Cultivars Based On The Sequence Analysis Of Nrits And TrnL‑Is‑TrnF Regions, Seo Young Park, Mi Jin Jeon, Young Hee Joung, Keenan L. Amundsen, Gianluca Burchi, Angelo Porcelli, Mark S. Roh

Department of Agronomy and Horticulture: Faculty Publications

Narcissus tazetta var. chinensis (N. taz. var. chi.) accessions collected from the coastal areas of China, Korea, and Japan were compared with accessions of lower ranks of Narcissus tazetta (N. taz.) from Italy to study the genetic variations and with several morphologically similar cultivars available in the trade. Sequences of the internal transcribed spacer (ITS) regions of nuclear ribosomal DNA (nrITS) dendrogram and the chloroplast trnL-IS-trnF intergeneric spacer-gene (cpIS) were analyzed by maximum likelihood (ML) and posterior probability using STRUCTURE program. All single fower form of N. taz. var. chi. collected from China, Korea, and …

Potential Use Of Pgpr Based Biofertilizer For Improving The Nutrient Availability In Soil And Agronomic Efficiency Of Upland Rice, Rahma Tia Harahap, Diyan Herdiyantoro, Mieke Rochimi Setiawati, Isna Niar Rahmatul Azizah, Tualar Simarmata

Jurnal Kultivasi

Present study aimed to perform literature review to investigate the current status and potential use of plant growth promoting rhizobacteria (PGPR) for enhancing the soil plant’s health, plant growth and productivity in sustainable ways. The Systematic Literature Review (SLR) methods was applied according to Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) on published scientific literature from 2012-2022. Results revealed that genus diversity of PGPR (Bacillus sp., Serratia sp., Streptomyces sp., Pseudomonas sp., and Burkholderia sp.) produce siderophore and phytohormones such as indole-3-acetic acid (IAA), gibberellin (GAs), auxin, and 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activity, organic acids, biocontrol agent that …

Respons Komponen Hasil Dan Hasil Varietas Padi Berprotein Tinggi Terhadap Pemberian Dosis Pupuk Nitrogen, Agus Riyanto, Dyah Susanti, Totok Agung Dwi Haryanto

Jurnal Kultivasi

Inpago Unsoed Protani dan Inpari Unsoed P20Tangguh adalah padi (Oryza sativa L.) daya hasil tinggi yang memiliki kandungan protein beras tinggi yang pertumbuhannya dipengaruhi oleh pemupukan nitrogen. Tujuan penelitian ini adalah mengetahui respons komponen hasil dan hasil padi protein tinggi terhadap pupuk nitrogen dan memperoleh dosis optimal pupuk nitrogen untuk varietas Inpago Unsoed Protani dan Inpari Unsoed P20Tangguh. Percobaan dirancang dengan RAK pola faktorial dwi faktor yang diulang tiga kali. Faktor pertama adalah dosis pupuk N yaitu: 0 kg N ha-1, 46 kg N ha-1, 92 kg N ha-1, dan 138 kg N ha-1. Faktor kedua adalah genotipe padi yaitu …

Effects Of Soil Management Practices On Water Infiltration And Maize Yield To Improve Mississippi River Valley Alluvial Aquifer Sustainability, Jacob Rix

Theses and Dissertations

Surface sealing and hardpans in loam soils are problematic in the Mid-South U.S. because of intense tillage. Two experiments quantified the effects of soil management practices on infiltration and maize yield in loam soils. The first study measured the impacts of in-row subsoiling frequency × furrow irrigation frequency. In-row subsoiling significantly improved the infiltration of irrigation but not the infiltration of precipitation. In-row subsoiling with low irrigation frequency is optimal to achieve profitable maize yields while encouraging groundwater conservation. In the second study, six soil management treatments were imposed. For single-ring infiltrometer tests, infiltration rates were different between the two …

Evaluation Of Soybean [Glycine Max (L.) Merr.] Cultivar Response To Prophylactic Fungicide Application, Steven B. Stoker

Theses and Dissertations

Soybean growers in the southern United States commonly deal with disease issues that can limit yield potential. As a result, growers have adopted prophylactic fungicide application targeted at specific growth stages as a standard management practice. However, yield responses to prophylactic applications have become sporadic over time. One major change that has occurred is adoption of cultivars with improved disease tolerances. Therefore, the objective of this research was to evaluate yield response of cultivars representing multiple genetic backgrounds to fungicides applied prophylactically at the R4 soybean growth stage. Experiments were conducted in 2020 and 2021 to determine the yield impact …

Evaluating The Impacts Of Waterlogging Stress On Cowpea (Vigna Unguiculata L.) Growth Traits And Physiological Performance, Omolayo Joshua Olorunwa

Theses and Dissertations

The progressive increase in the global population and the rapidly changing climate have put unprecedented pressure on crop production. Cowpea is one of the world’s most important leguminous crops, contributing to food security and environmental sustainability. However, cowpea productivity is limited due to waterlogging stress. The main objective of this study was to explore physiological and biochemical mechanisms to understand how cowpea genotypes respond to waterlogging stress. Four studies were conducted in controlled and field conditions to achieve these objectives. Study 1 characterized the waterlogging tolerance of 30 cowpea genotypes in a controlled environment using 24 morphophysiological parameters with waterlogging …

Reassessing Nitrogen Management For Maize Production In Mississippi, Camden Dawson Oglesby

Theses and Dissertations

12 N treatments in 2020 and 11 in 2021 were replicated four times over four locations in a randomized complete block design. The first research tested the efficacy of CYG for Mississippi corn (Zea mays L.) production. The optimum N rates were calculated by fitting four models. Differences between the CYG rate and AONR were compared. AONR varied from 134 to 301 kg N ha–1 at different management levels. When we compared the AONR to the CYG rate, the CYG rate over-recommended N in 12 of the 14 possible comparisons. The second study compared different VIs, methods, and sensors at …

Evaluation For Using Expended Bioelectrochemical Systems As Soil Amendments For Improved Corn Plant Growth And A Drought Resistant Soil., Jackson Lee Sauers

Theses and Dissertations

A long-held practice is to mix agricultural soil with a soil amendment to improve growing conditions in crops. A common soil amendment is biosolids produced from both municipal and dairy wastewater due to the macro- and micronutrients within it. Both the agricultural and wastewater industries are participating in the Circular Economy concept (CEC). Two experiments explored using expended bioelectrochemical systems (BES) that treated either synthetic dairy wastewater (DWW) or synthetic municipal wastewater (SWW) as soil amendments to improve corn plant growth when treated with three different nutrient treatments: 100%- 50%- and 0% Hoagland Nutrient Solutions. Biochar and used terracotta clay …

An Evaluation On The Effects Of Additions And Deletions Of Specific Nutrient Management Strategies On Corn Yield At Different Plant Densities, James D. Dew

Theses and Dissertations

Improved management strategies are needed to increase yield production and quality. The study aimed to determine suitable cultural practices for improved corn production. Experiments were set up at Verona and Stoneville, Mississippi, from 2020 to 2022. Treatments included row configurations (single and twin-row), plant populations (79,000 and 99,000 seeds ha-1), and six combinations of nutrients with or without fungicide. The nutrients evaluated were two nitrogen rates 235 and 314 kg N ha-1, phosphorus 45 kg P ha-1, potassium 112 kg K ha-1, sulfur 22 kg S ha-1, and zinc 11 kg Zn ha-1, and fungicide at 272 ml ha-1. In …

Biological Remediation Of Fragipan, Corey Hale

Honors College Theses

The fragipan layer in the soil is a naturally occurring subsurface layer that restricts water percolation as well as inhibits root growth. A fragipan layer can be found almost ubiquitously across Southwestern Kentucky. This limits how agriculturalists manage soils in this area. It has been recently discovered by the University of Kentucky that Annual Ryegrass roots produce 3,4 dihydroxyphenylpropionic acid (DHPPA) that reacts with this hardpan to weaken the layer. Certain bacteria, such as Escherichia coli, Lactobacilli, and Bifidobacteria can also synthesize DHPPA through a breakdown process of chlorogenic acid. This reaction typically happens in the human digestive tract. …

Development Of Adaptive Rice Variety To Non-Tidal Swamp: Growth Evaluation Of Backcrossed Progenies (Bc1f1) And Its Parents, Inpago 5 And Inpara 8, Nabilah Amiros, Rujito Agus Suwignyo, Mery Hasmeda, Fikri Adriansyah, Entis Sutisna Halimi, Erizal Sodikin

Jurnal Kultivasi

Rice (Oryza sativa L.) cultivation in non-tidal swamp is severely constrained by abiotic stresses, i.e., submerged stress in the vegetative phase and drought stress in the generative phase. The development of rice varieties that have dual-tolerant to those abiotic stresses can improve adaptability and increase productivity. Efforts to obtain adaptive varieties under those abiotic stress conditions are being carried out by selecting the parents and crossing them, and has resulted in the population of BC1F1. The research was carried out on April – June 2021 at greenhouse of the Agriculture Faculty, Sriwijaya University. The study aimed to evaluate the growth …

Application Of Organic Fertilizer And Phosphate Solubilizing Bacteria To Increase The Growth And Yield Of Potatoes In Andisol, Agustina Erlinda Marpaung, Bina Karo, Susilawati Barus, Rina Christina Hutabarat, Rasiska Tarigan

Jurnal Kultivasi

Andisol has low phosphate (P) nutrient content due to high P fixation by allophane minerals, which affects crop production. The application of organic fertilizers and phosphate solubilizing bacteria can increase the availability of P in the soil in order to increase the production of potato plants. This study aimed to evaluate the effect of different types of organic fertilizer and phosphate solubilizing bacteria (PSB) on potato production. The research was conducted from August to November 2020 in the installation of research and assessment of agricultural technology Berastagi, Karo Regency, with an altitude of ± 1,340 m above sea level and …

A Review Of The Role Of Pollination On The Yield Of Cocoa Plant, Dani, Dewi Nur Rokhmah

Jurnal Kultivasi

Yield of cocoa (Theobroma cacao L.) plant, in form of cocoa seeds, is produced through the process of sexual reproduction. Pollination plays an important role in the successful formation of cocoa fruit and seeds. In addition, number of ovules per ovary, degree of self-incompatibility, and xenia effect are also affected the final yield. Those characters are determined by genetic factors. Cocoa flowers that are not pollinated fall within 24 hours and fail to develop into fruits and seeds. Pollination intensity up to a certain level showed a significant effect on increasing the percentage of fruit formation and the number of …

Application Of Legume Cover Crop And Various Vermicompost Dosages On Young Cinchona In The Marginal Area, Yudithia Maxiselly, Mira Ariyanti, Mochamad Arief Soleh, Naufal Fikri

Jurnal Kultivasi

Cinchona (Cinchona ledgeriana Moens) is one of the important medicinal plants that have the potential to cultivate as herbal medicine. This plant grows well in highland areas. Developing cinchona plants in the marginal area needs effort and modification techniques such as planting legume cover crop (LCC) to maintain the humidity and supply nutrition by fertilizing. Vermicompost is one of the organic fertilizers with rich nutrition to support plant growth. This research aimed to observe the effect of a combination of Mucuna bracteata as LCC and vermicompost dosage on young cinchona growth in a marginal area. This research was carried out …

Demonstration Farm Provides Educational Opportunity For Ipm, Nick Volesky, Mair Murray

Outcomes and Impact Quarterly

The mission of USU Extension’s Integrated Pest Management (IPM) program is to increase the use of sustainable pest management practices within urban and rural landscapes to provide economic, human, and environmental health in Utah. In the spring of 2022, the IPM program established a vegetable farm to test and demonstrate IPM practices. The farm served as an experiential learning classroom for almost 50 farmers and home gardeners.

Poisson Hurdle Model-Based Method For Clustering Microbiome Features, Zhili Qiao, Elle Barnes, Susannah Tringe, Daniel P. Schachtman, Peng Liu

Department of Agronomy and Horticulture: Faculty Publications

Motivation: High-throughput sequencing technologies have greatly facilitated microbiome research and have generated a large volume of microbiome data with the potential to answer key questions regarding microbiome assembly, structure and function. Cluster analysis aims to group features that behave similarly across treatments, and such grouping helps to highlight the functional relationships among features and may provide biological insights into microbiome networks. However, clustering microbiome data are challenging due to the sparsity and high dimensionality.

Results: We propose a model-based clustering method based on Poisson hurdle models for sparse microbiome count data. We describe an expectation–maximization algorithm and a …

Biology, Monitoring, Sampling, And Management Of Rice Billbug, Sphenophorus Pertinax, In Furrow-Irrigated Rice, Chase Alan Floyd

Graduate Theses and Dissertations

Furrow-irrigated rice hectares have increased annually for the last five years in the predominant long-grain rice producing states. Initial implementation of the system began in the 1980’s, but lack of rice blast (Magnaporthe grisea, Hebert) resistant cultivars made the system a nonviable option for rice producers. Hybridization of rice cultivars with less susceptibility has begun to increase the interest of producers to implement a furrow-irrigated rice production system due to the cost saving opportunities that it may provide. Elimination of the flood from large sections of the rice fields in a furrow-irrigated system alters management strategies and pest complexes compared …