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Articles 1051 - 1080 of 1687

Full-Text Articles in Agricultural Science

Occurrence Of An Herbicide-Resistant Plant Trait In Agricultural Field Margins, Karla L. Gag, David J. Gibson, Bryan G. Young, Julie M. Young, Joseph L. Matthews, Stephen C. Weller, Robert G. Wilson Jul 2015

Occurrence Of An Herbicide-Resistant Plant Trait In Agricultural Field Margins, Karla L. Gag, David J. Gibson, Bryan G. Young, Julie M. Young, Joseph L. Matthews, Stephen C. Weller, Robert G. Wilson

Department of Agronomy and Horticulture: Faculty Publications

Agricultural environments allow study of evolutionary change in plants. An example of evolution within agroecological systems is the selection for resistance to the herbicide glyphosate within the weed, Conyza canadensis. Changes in survivorship and reproduction associated with the development of glyphosate resistance (GR) may impact fitness and influence the frequency of occurrence of the GR trait. We hypothesized that site characteristics and history would affect the occurrence of GR C. canadensis in field margins. We surveyed GR occurrence in field margins and asked whether there were correlations between GR occurrence and location, crop rotation, GR crop trait rotation, crop type, …


Comparing Yield Monitors With Weigh Wagons For On-Farm Corn Hybrid Evaluation, Bjorn P. Nelson, Roger Wesley Elmore, Andrew W. Lenssen Jun 2015

Comparing Yield Monitors With Weigh Wagons For On-Farm Corn Hybrid Evaluation, Bjorn P. Nelson, Roger Wesley Elmore, Andrew W. Lenssen

Department of Agronomy and Horticulture: Faculty Publications

For many years, on-farm yield evaluations of corn (Zea mays L.) hybrids were done with weigh wagons, handheld moisture testers, and measuring wheels. Today, most combines have continuous flow yield and moisture sensors. Published research results comparing the accuracy of combine-mounted sensor systems with that of weigh wagons are limited for on-farm corn hybrid evaluation. This study examined the accuracy of combine-mounted yield sensors with traditional weigh wagon methodology in on-farm corn hybrid strip trials. Data from combine-mounted sensors for plot weight, moisture percentage, and yield were compared with weigh wagon weight, handheld moisture testers, and calculated yield …


Genetic Engineering Online Lessons Improve Teaching And Increase Knowledge And Accepting Attitudes Among Students, Grace Troupe Jun 2015

Genetic Engineering Online Lessons Improve Teaching And Increase Knowledge And Accepting Attitudes Among Students, Grace Troupe

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Genetic engineering has been used in the production of food in the U.S. for nearly three decades, however, science literacy in genetic engineering among consumers is still low. To address this problem, an online resource called The Journey of a Gene (passel.unl.edu/ge) was created to help incorporate genetic engineering education in high school and college curriculums. Here we report two studies conducted to evaluate the effectiveness of The Journey of a Gene in 1) improving student knowledge and attitudes about genetic engineering and 2) helping teachers increase their knowledge as well as quantity and quality of genetic engineering instruction. In …


Predictive Modeling Of Oxygen Transmission Through Micro-Perforations For Packaging Applications, Ayman Abdellatief, Bruce A. Welt, Jason Butler, Eric Mclamore, Arthur Teixeira, Sanjay Shukla May 2015

Predictive Modeling Of Oxygen Transmission Through Micro-Perforations For Packaging Applications, Ayman Abdellatief, Bruce A. Welt, Jason Butler, Eric Mclamore, Arthur Teixeira, Sanjay Shukla

Journal of Applied Packaging Research

Methods for creating precise perforations in respiring produce packaging are being increasingly adopted. Knowledge of oxygen transfer through perforated packaging and oxygen distribution in packages is necessary for successful packaging design of fresh produce. An approach to modeling perforated packaging performance was developed using a cylindrical chamber with precision perforations using Fick’s second law. The model was simulated using two techniques including Finite Element Method (FEM) using commercially available software and Finite Volume Method (FVM) through programming. Perforations were approximated as a source term in the second method. Both simulation techniques showed trends similar to experimental data.


Fishing For A Sustainable Future: Aquaponics As A Method Of Food Production, Richard Ramsundar May 2015

Fishing For A Sustainable Future: Aquaponics As A Method Of Food Production, Richard Ramsundar

Student Theses 2015-Present

This thesis compares and explains the advantages aquaponics farming has over modern industrial intensive farming. Through a comparison natural capital usage, conservation, recycling and cost, the thesis advocates for the expansion of aquaponics usage in urban settings. The thesis also explains the history of intensive farming and aquaponics in America, the science of how aquaponics operates, the economic and environmental costs of modern intensive farming versus aquaponics farming, and the social implications of aquaponics. Lastly, I propose a policy that reallocates farm subsidies by modifying the Farm Bill. Then I propose policies that support creating a new standard of farm …


Microsatellite Variations Of Elite Setaria Varieties Released During Last Six Decades In China, Guanqing Jia, Xiaotong Liu, James C. Schnable, Zhengang Niu, Chunfang Wang, Yuhui Li, Shujun Wang, Suying Wang, Jinrong Liu, Erhu Guo, Hui Zhi, Xianmin Diao May 2015

Microsatellite Variations Of Elite Setaria Varieties Released During Last Six Decades In China, Guanqing Jia, Xiaotong Liu, James C. Schnable, Zhengang Niu, Chunfang Wang, Yuhui Li, Shujun Wang, Suying Wang, Jinrong Liu, Erhu Guo, Hui Zhi, Xianmin Diao

Department of Agronomy and Horticulture: Faculty Publications

Crop improvement is a multifaceted micro-evolutionary process, involving changes in breeding approaches, planting configurations and consumption preferences of human beings. Recent research has started to identify the specific genes or genomic regions correlate to improved agronomic traits, however, an apparent blank between the genetic structure of crop elite varieties and their improving histories in diverse modern breeding programs is still in existence. Foxtail millet (Setaria italica) was one of the earliest cereal crops to be domesticated and served as a staple crop for early civilizations in China, where it is still widely grown today. In the present trial, …


Respon Kualitas Dan Ketahanan Simpan Cabai Merah (Capsicum Annuum L.) Dengan Penggunaan Jenis Bahan Pengemas Dan Tingkat Kematangan Buah, Yayat Rochayat Suradinata, V. R. Munika Mar 2015

Respon Kualitas Dan Ketahanan Simpan Cabai Merah (Capsicum Annuum L.) Dengan Penggunaan Jenis Bahan Pengemas Dan Tingkat Kematangan Buah, Yayat Rochayat Suradinata, V. R. Munika

Jurnal Kultivasi

Penelitian ini bertujuan untuk mengetahui pengaruh kombinasi jenis bahan pengemas dan tingkat kematangan buah terhadap respon kualitas simpan cabai merah (Capsicum annuum L). Penelitian ini dilaksanakan pada bulan Maret sampai Juli 2012 di Cikole Lembang, dilanjut dengan pengamatan di Laboratorium Hortikul-tura, Fakultas Pertanian, Universitas Padja-djaran, Jatinangor, Kabupaten Sumedang, Jawa Barat. Rancangan percobaan yang digunakan adalah Rancangan Acak Kelompok (RAK) pola tunggal yang terdiri sepuluh kombinasi dan diulang tiga kali untuk setiap perlakuan. Tingkat kematangan buah yang digunakan yaitu kematangan 50–60% (K₁) dan kematangan 60–70 % (K₂). Jenis bahan pengemas yang digunakan adalah wadah Styrofoam tanpa tutup (P₁), wadah styrofoam di …


Pertumbuhan, Hasil Dan Kualitas Tomat Cv. Marta-9 Pada Berbagai Sistem Budidaya Dalam Rumah Plastik Di Dataran Medium Jatinangor, Tino Mutiarawati Onggo, Sumadi, R. Fauziah Mar 2015

Pertumbuhan, Hasil Dan Kualitas Tomat Cv. Marta-9 Pada Berbagai Sistem Budidaya Dalam Rumah Plastik Di Dataran Medium Jatinangor, Tino Mutiarawati Onggo, Sumadi, R. Fauziah

Jurnal Kultivasi

Penanaman tomat dalam rumah plastik dengan sistem budidaya hidroponik, meng-0hasilkan buah dengan kuantitas dan kualitas baik serta dapat dilakukan secara kontinu, namun kekurangan sistem tersebut adalah bahan kimia yang digunakan untuk hara tanaman mahal, sehingga perlu dicarikan sistem budidaya alter-natif yang dapat mengimbangi hasil dan kualitas hasil sistem hidroponik. Tujuan dilaku-kannya penelitian ini adalah untuk mempelajari berbagai sistem budidaya tanaman tomat dalam rumah plastik yang dapat diaplikasikan di dataran medium dengan biaya yang lebih murah serta menguji jumlah batang produksi yang dapat menghasilkan pertumbuhan dan hasil tanaman serta kualitas tomat yang baik. Penelitian dilakukan dari bulan Juni sampai dengan Oktober …


Assessing The Perceptions Of Faculty Advisors And Green Industry Professionals On The Value Of Student Participation In A Professional Development Competitive Event, Katelynn Diane Clement Mar 2015

Assessing The Perceptions Of Faculty Advisors And Green Industry Professionals On The Value Of Student Participation In A Professional Development Competitive Event, Katelynn Diane Clement

Theses and Dissertations

The purpose of this study was to evaluate the impact Professional Landcare Network (PLANET) Student Career Days (SCD) professional development experience has on conceptual learning, job opportunities and placement, and job retention in the green industry. Student participants, PLANET judging team faculty advisors, and green industry professionals who attended the career fair were surveyed on their perceptions of PLANET Student Career Days and its related events. A block style survey was sent out to the participant groups. Depending on the participant's affiliation with PLANET Student Career Days, participants were asked a different set of questions in the survey. Each survey …


Evaluation And Association Mapping Of Resistance To Tan Spot And Stagonospora Nodorum Blotch In Adapted Winter Wheat Germplasm, Zhaohui Liu, Ibrahim El-Basyoni, Gayan Kariyawasam, Guorong Zhang, Allan Fritz, Jana Hansen, Francois Marais, Andrew Friskop, Shiaoman Chao, Eduard Akhunov, P. Stephen Baenziger Mar 2015

Evaluation And Association Mapping Of Resistance To Tan Spot And Stagonospora Nodorum Blotch In Adapted Winter Wheat Germplasm, Zhaohui Liu, Ibrahim El-Basyoni, Gayan Kariyawasam, Guorong Zhang, Allan Fritz, Jana Hansen, Francois Marais, Andrew Friskop, Shiaoman Chao, Eduard Akhunov, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Tan spot and Stagonospora nodorum blotch (SNB), often occurring together, are two economically significant diseases of wheat in the Northern Great Plains of the United States. They are caused by the fungi Pyrenophora tritici-repentis and Parastagonospora nodorum, respectively, both of which produce multiple necrotrophic effectors (NE) to cause disease. In this work, 120 hard red winter wheat (HRWW) cultivars or elite lines, mostly from the United States, were evaluated in the greenhouse for their reactions to the two diseases as well as NE produced by the two pathogens. One P. nodorum isolate (Sn4) and four Pyrenophora tritici-repentis isolates (Pti2, …


Characterization Of Novel Sorghum Brown Midrib Mutants From An Ems-Mutagenized Population, Scott E. Sattler, Ana Saballos, Zhanguo Xin, Deanna L. Funnell-Harris, Wilfred Vermerris, Jeffrey F. Pedersen Jan 2015

Characterization Of Novel Sorghum Brown Midrib Mutants From An Ems-Mutagenized Population, Scott E. Sattler, Ana Saballos, Zhanguo Xin, Deanna L. Funnell-Harris, Wilfred Vermerris, Jeffrey F. Pedersen

Department of Agronomy and Horticulture: Faculty Publications

Reducing lignin concentration in lignocellulosic biomass can increase forage digestibility for

ruminant livestock and saccharification yields of biomass for bioenergy. In sorghum (Sorghum bicolor (L.) Moench) and several other C4 grasses, brown midrib (bmr) mutants have been shown to reduce lignin concentration. Putative bmr mutants isolated from an EMS-mutagenized population were characterized and classified based on their leaf midrib phenotype and allelism tests with the previously described sorghum bmr mutants bmr2, bmr6, and bmr12. These tests resulted in the identification of additional alleles of bmr2, bmr6, and bmr12, and, in addition, six bmr …


Assessment Of Rice Self-Sufficiency In 2025 In Eight African Countries, P. A.J. Van Oort, K. Saito, E. Amovin-Assagba, Lenny G.J. Van Bussel, Justin Van Wart, Hugo De Groot, Martin K. Van Ittersum, Kenneth Cassman, M. C.S. Wopereis Jan 2015

Assessment Of Rice Self-Sufficiency In 2025 In Eight African Countries, P. A.J. Van Oort, K. Saito, E. Amovin-Assagba, Lenny G.J. Van Bussel, Justin Van Wart, Hugo De Groot, Martin K. Van Ittersum, Kenneth Cassman, M. C.S. Wopereis

Department of Agronomy and Horticulture: Faculty Publications

Most African countries are far from self-sufficient in meeting their rice consumption; in eight countries the production: consumption ratio, ranged from 0.16 to 1.18 in 2012. We show that for the year 2025, with population growth, diet change and yield increase on existing land (intensification), countries cannot become fully self-sufficient in rice. This implies that for the future, a mixture of area expansion and imports will be needed on top of yield gap closure. Further research is needed for identification of most suitable new land for rice area expansion and areas that should be protected.


Patch Burning: Implications On Water Erosion And Soil Properties, Altingul Ozaslan Parlak, Mehmet Parlak, Humberto Blanco-Canqui, Walter H. Schacht, John A. Guretzky, Martha Mamo Jan 2015

Patch Burning: Implications On Water Erosion And Soil Properties, Altingul Ozaslan Parlak, Mehmet Parlak, Humberto Blanco-Canqui, Walter H. Schacht, John A. Guretzky, Martha Mamo

Department of Agronomy and Horticulture: Faculty Publications

Patch burning can be a potential management tool to create grassland heterogeneity and enhance forage productivity and plant biodiversity, but its impacts on soil and environment have not been widely documented. In summer 2013, we studied the effect of time after patch burning (4 mo after burning [recently burned patches], 16 mo after burning [older burned patches], and unburned patches [control]) on vegetative cover, water erosion, and soil properties on a patch-burn experiment established in 2011 on a Yutan silty clay loam near Mead, NE. The recently burned patches had 29 ± 8.0% (mean ± SD) more bare ground, 21 …


Transgenic Wheat Expressing A Barley Udp-Glucosyltransferase Detoxifies Deoxynivalenol And Provides High Levels Of Resistance To Fusarium Graminearum, Xi Li, Sanghyun Shin, Shane Heinen, Ruth Dill-Macky, Franz Berthiller, Natalya Nersesian, Thomas Clemente, Susan Mccormick, Gary J. Muehbauer Jan 2015

Transgenic Wheat Expressing A Barley Udp-Glucosyltransferase Detoxifies Deoxynivalenol And Provides High Levels Of Resistance To Fusarium Graminearum, Xi Li, Sanghyun Shin, Shane Heinen, Ruth Dill-Macky, Franz Berthiller, Natalya Nersesian, Thomas Clemente, Susan Mccormick, Gary J. Muehbauer

Department of Agronomy and Horticulture: Faculty Publications

Fusarium head blight (FHB), mainly caused by Fusarium graminearum, is a devastating disease of wheat that results in economic losses worldwide. During infection, F. graminearum produces trichothecene mycotoxins, including deoxynivalenol (DON), that increase fungal virulence and reduce grain quality. Transgenic wheat expressing a barley UDP-glucosyltransferase (HvUGT13248) were developed and evaluated for FHB resistance, DON accumulation, and the ability to metabolize DON to the less toxic DON-3-O-glucoside (D3G). Pointinoculation tests in the greenhouse showed that transgenic wheat carrying HvUGT13248 exhibited significantly higher resistance to disease spread in the spike (type II resistance) compared with nontransformed controls. Two transgenic …


The Effect Of Turning Frequency On In-Vessel Compost Processing And Quality, Paige E. Boyle, Mary C. Savin, Lisa S. Wood Jan 2015

The Effect Of Turning Frequency On In-Vessel Compost Processing And Quality, Paige E. Boyle, Mary C. Savin, Lisa S. Wood

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Composting can contribute to the zero waste initiative on the University of Arkansas (UA) campus. In-vessel systems like Earth Tubs™ are purported to provide better control of temperature and moisture during the composting process. Turning materials helps facilitate microbial activity and thermophilic composting. The goal of this research was to determine if turning frequency affects processing or final quality of compost made with pre- and post-consumer food waste feedstock and a wood chip bulking agent. Turning frequencies (treatment) of 3 days/week and 7 days/ week were evaluated simultaneously throughout three sequential runs. Temperature, pH, electrical conductivity (EC), and moisture content …


Fall Seed Guide 2015, Teshome Regassa, P. Stephen Baenziger, Stephen N. Wegulo, Greg Kruger, Dipak K. Santra Jan 2015

Fall Seed Guide 2015, Teshome Regassa, P. Stephen Baenziger, Stephen N. Wegulo, Greg Kruger, Dipak K. Santra

Department of Agronomy and Horticulture: Faculty Publications

Crops included in this guide are winter wheat, winter barley, and triticale. You may receive this guide in the mail or through the University of Nebraska Extension network. The data and other information this guide is can be found at our web site: http://cropwatch.unl.edu/varietytest/ and http://www.unl.edu/ncia. Additional information is available at the wheat variety virtual tour web site http://cropwatch.unl.edu/wheat/virtual or the winter wheat variety selection tool page http:// citnews.unl.edu/winter_wheat_tool/index.shtml. The last season was hard on Nebraska winter wheat. Emergence was poor in the west due to dry conditions. On the other hand, some plots in the east had to be …


Model And Sensor-Based Recommendation Approaches For In-Season Nitrogen Management In Corn, L. J. Thompson, R. B. Ferguson, N. Kitchen, D. W. Frazen, M. Mamo, H. Yang, J. S. Schepers Jan 2015

Model And Sensor-Based Recommendation Approaches For In-Season Nitrogen Management In Corn, L. J. Thompson, R. B. Ferguson, N. Kitchen, D. W. Frazen, M. Mamo, H. Yang, J. S. Schepers

Department of Agronomy and Horticulture: Faculty Publications

Nitrogen management for corn (Zea mays L.) may be improved by applying a portion of N in-season. This investigation was conducted to evaluate crop modeling (Maize-N) and active crop canopy sensing approaches for recommending in-season N fertilizer rates. These approaches were evaluated during 2012–2013 on 11 field sites, in Missouri, Nebraska, and North Dakota. Nitrogen management also included a no-N treatment (check) and a non-limiting N reference (all at planting). Nitrogen management treatments were assessed for two hybrids and at low and high seeding rates, arranged in a randomized complete block design. In 9 of 11 site-years, the sensor-based …


Arkansas Cotton Variety Test 2014, Fred Bourland, A. Beach, C. Kennedy, L. Martin, A. Rouse, B. Robertson Jan 2015

Arkansas Cotton Variety Test 2014, Fred Bourland, A. Beach, C. Kennedy, L. Martin, A. Rouse, B. Robertson

Arkansas Agricultural Experiment Station Research Series

The primary goal of the Arkansas Cotton Variety Test is to provide unbiased data regarding the agronomic performance of cotton varieties and advanced breeding lines in the major cotton-growing areas of Arkansas. This information helps seed companies establish marketing strategies and assists producers in choosing varieties to plant.


Potential For Crop Production Increase In Argentina Through Closure Of Existing Yield Gaps, Fernando Aramburu Merlos, Juan Pablo Monzon, Jorge L. Mercau, Miguel Taboada, Fernando H. Andrade, Antonio J. Hall, Esteban Jobbagy, Kenneth Cassman, Patricio Grassini Jan 2015

Potential For Crop Production Increase In Argentina Through Closure Of Existing Yield Gaps, Fernando Aramburu Merlos, Juan Pablo Monzon, Jorge L. Mercau, Miguel Taboada, Fernando H. Andrade, Antonio J. Hall, Esteban Jobbagy, Kenneth Cassman, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Favorable climate and soils for rainfed crop production, together with a relatively low population density,results in 70–90% of Argentina grain production being exported. No assessment to date has tried to estimate the potential for extra grain production for soybean, wheat and maize, which account for 78%of total harvested area, by yield gap closure on existing cropland area and its impact at a global scale.The objectives of this paper are (i) to estimate how much additional grain could be produced without expanding crop area by closing yield gaps in Argentina, (ii) to investigate how this production and yield gaps varies across …


Plants Coping Abiotic And Biotic Stresses: A Tale Of Diligent Management, Hatem Rouached, Sikander Pal, Shimon Rachmilevitch, Marc Libault, Lam-Son Phan Tran Jan 2015

Plants Coping Abiotic And Biotic Stresses: A Tale Of Diligent Management, Hatem Rouached, Sikander Pal, Shimon Rachmilevitch, Marc Libault, Lam-Son Phan Tran

Department of Agronomy and Horticulture: Faculty Publications

Plants unlike other living forms are sessile thereby facing severe biotic and abiotic stresses. Plants have evolved different efficient defence responses which thrive upon a number of intrinsic factors, such as genotypic and phenotypic constitutions and developmental circumstances, and extrinsic factors like severity and duration of the stresses. Stress management uses molecular and biochemical level controls, the competence, and speed, at which a stress signal is perceived and transmitted to generate stress signal molecules and activate stress-protective mechanisms. A well-concerted action of the plants’ competence at morphological, physiological, biochemical, and molecular strata regulates numerous adaptive responses to biotic and abiotic …


Calibration And Validation Of The Hybrid-Maize Crop Model For Regional Analysis And Application Over The U.S. Corn Belt, Xing Liu, Jeff Andresen, Haishun Yang, Dev Niyogi Jan 2015

Calibration And Validation Of The Hybrid-Maize Crop Model For Regional Analysis And Application Over The U.S. Corn Belt, Xing Liu, Jeff Andresen, Haishun Yang, Dev Niyogi

Department of Agronomy and Horticulture: Faculty Publications

Detailed parameter sensitivity, model validation, and regional calibration of the Hybrid-Maize crop model were undertaken for the purpose of regional agroclimatic assessments. The model was run at both field scale and county scale. The county-scale study was based on 30-yr daily weather data and corn yield data from the National Agricultural Statistics Service survey for 24 locations across the Corn Belt of the United States. The field-scale study was based on AmeriFlux sites at Bondville, Illinois, andMead, Nebraska. By using the one-at-a-time and interaction-explicit factorial design approaches for sensitivity analysis, the study found that the five most sensitive parameters of …


Identification Of Novel Qtl Governing Root Architectural Traits In An Interspecific Soybean Population, Lakshmi P. Manavalan, Silvas J. Prince, Theresa A. Musket, Julian Chaky, Rupesh Deshmukh, Tri D. Vuong, Li Song, Perry B. Cregan, James C. Nelson, J. Grover Shannon, James E. Specht, Henry T. Nguyen Jan 2015

Identification Of Novel Qtl Governing Root Architectural Traits In An Interspecific Soybean Population, Lakshmi P. Manavalan, Silvas J. Prince, Theresa A. Musket, Julian Chaky, Rupesh Deshmukh, Tri D. Vuong, Li Song, Perry B. Cregan, James C. Nelson, J. Grover Shannon, James E. Specht, Henry T. Nguyen

Department of Agronomy and Horticulture: Faculty Publications

Cultivated soybean (Glycine max L.) cv. Dunbar (PI 552538) and wild G. soja (PI 326582A) exhibited significant differences in root architecture and root-related traits. In this study, phenotypic variability for root traits among 251 BC2F5 backcross inbred lines (BILs) developed from the cross Dunbar/PI 326582A were identified. The root systems of the parents and BILs were evaluated in controlled environmental conditions using a cone system at seedling stage. The G. max parent Dunbar contributed phenotypically favorable alleles at a major quantitative trait locus on chromosome 8 (Satt315-I locus) that governed root traits (tap root length and …


Genetic And Molecular Characterization Of Submergence Response Identifies Subtol6 As A Major Submergence Tolerance Locus In Maize, Malachy T. Campbell, Christopher A. Proctor, Yongchao Dou, Aaron J. Schmitz, Piyaporn Phansak, Greg R. Kruger, Chi Zhang, Harkamal Walia Jan 2015

Genetic And Molecular Characterization Of Submergence Response Identifies Subtol6 As A Major Submergence Tolerance Locus In Maize, Malachy T. Campbell, Christopher A. Proctor, Yongchao Dou, Aaron J. Schmitz, Piyaporn Phansak, Greg R. Kruger, Chi Zhang, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Maize is highly sensitive to short term flooding and submergence. Early season flooding reduces germination, survival and growth rate of maize seedlings. We aimed to discover genetic variation for submergence tolerance in maize and elucidate the genetic basis of submergence tolerance through transcriptional profiling and linkage analysis of contrasting genotypes. A diverse set of maize nested association mapping (NAM) founder lines were screened, and two highly tolerant (Mo18Wand M162W) and sensitive (B97 and B73) genotypes were identified. Tolerant lines exhibited delayed senescence and lower oxidative stress levels compared to sensitive lines. Transcriptome analysis was performed on these inbreds to provide …


Allmaps: Robust Scaffold Ordering Based On Multiple Maps, Haibo Tang, Xingtan Zhang, Chenyong Miao, Jisen Zhang, Ray Ming, James C. Schnable, Patrick S. Schnable, Eric Lyons, Jianguo Lu Jan 2015

Allmaps: Robust Scaffold Ordering Based On Multiple Maps, Haibo Tang, Xingtan Zhang, Chenyong Miao, Jisen Zhang, Ray Ming, James C. Schnable, Patrick S. Schnable, Eric Lyons, Jianguo Lu

Department of Agronomy and Horticulture: Faculty Publications

The ordering and orientation of genomic scaffolds to reconstruct chromosomes is an essential step during de novo genome assembly. Because this process utilizes various mapping techniques that each provides an independent line of evidence, a combination of multiple maps can improve the accuracy of the resulting chromosomal assemblies. We present ALLMAPS, a method capable of computing a scaffold ordering that maximizes colinearity across a collection of maps. ALLMAPS is robust against common mapping errors, and generates sequences that are maximally concordant with the input maps. ALLMAPS is a useful tool in building high-quality genome assemblies. ALLMAPS is available at: https://github.com/tanghaibao/jcvi/wiki/ALLMAPS.


Effects Of Sowing Date On Phenotypic Plasticity Of Fitness-Related Traits In Two Annual Weeds On The Songnen Plain Of China, Haiyan Li, John L. Lindquist, Yunfei Yang Jan 2015

Effects Of Sowing Date On Phenotypic Plasticity Of Fitness-Related Traits In Two Annual Weeds On The Songnen Plain Of China, Haiyan Li, John L. Lindquist, Yunfei Yang

Department of Agronomy and Horticulture: Faculty Publications

Background Phenotypic plasticity of fitness-related traits is vital for plant species to adapt to variable environments. Chenopodium glaucum L. and Amaranthus retroflexus L. are two common weed species globally. Understanding the plasticity in life-history traits, especially in reproductive allocation, within and among these species is important for predicting their success and for managing them in different environments.

Methodology/Principal Findings Seeds of the two plant species were sown every 10 days from 26 Jun to 15 Aug. Life-history and fitness-related traits of both phenology and morphology were measured, and dry biomass of roots, stems, leaves, and reproductive tissues was determined at …


Fingerprinting Soybean Germplasm And Its Utility In Genomic Research, Qijian Song, D. L. Hyten, Gaofeng Jia, Charles V. Quigley, Edward W. Fickus, Randall L. Nelson, P. B. Cregan Jan 2015

Fingerprinting Soybean Germplasm And Its Utility In Genomic Research, Qijian Song, D. L. Hyten, Gaofeng Jia, Charles V. Quigley, Edward W. Fickus, Randall L. Nelson, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

The United States Department of Agriculture, Soybean Germplasm Collection includes 18,480 domesticated soybean and 1,168 wild soybean accessions introduced from 84 countries or developed in the U.S. This collection was genotyped with the SoySNP50K BeadChip containing greater than 50K SNPs. Redundant accessions were identified in the collection and distinct genetic backgrounds of soybean from different geographic origins were observed that could be a unique resource for soybean genetic improvement. We detected a dramatic reduction of genetic diversity based on linkage disequilibrium and haplotype structure analyses of the wild, landrace and North American cultivar populations and identified candidate regions associated with …


Selective Genotyping For Marker Assisted Selection Strategies For Soybean Yield Improvement, Benjamin D. Fallen, Fred L. Allen, Dean A. Kopsell, Arnold M. Saxton, Leah Mchale, J. Grover Shannon, Stella K. Kantartzi, Andrea J. Cardinal, P. B. Cregan, D. L. Hyten, Vincent R. Pantalone Jan 2015

Selective Genotyping For Marker Assisted Selection Strategies For Soybean Yield Improvement, Benjamin D. Fallen, Fred L. Allen, Dean A. Kopsell, Arnold M. Saxton, Leah Mchale, J. Grover Shannon, Stella K. Kantartzi, Andrea J. Cardinal, P. B. Cregan, D. L. Hyten, Vincent R. Pantalone

Department of Agronomy and Horticulture: Faculty Publications

Using molecular markers in soybean [Glycine max (L.) Merr.] has lead to the identification of major loci controlling quantitative and qualitative traits that include: disease resistance, insect resistance and tolerance to abiotic stresses. Yield has been considered as one of the most important quantitative traits in soybean breeding. Unfortunately, yield is a very complex trait and most yield quantitative trait loci (QTL) that have been identified have had only limited success for marker assisted selection (MAS). The objective of this study was to identify QTL associated with soybean seed yield in preliminary yield trials grown in different environments and …


Qtl For Seed Protein And Amino Acids In The Benning × Danbaekkong Soybean Population, C. V. Warrington, H. Abdel‑Haleem, D. L. Hyten, P. B. Cregan, J. H. Orf, A. S. Killam, N. Bajjalieh, Z. Li, H. R. Boerma Jan 2015

Qtl For Seed Protein And Amino Acids In The Benning × Danbaekkong Soybean Population, C. V. Warrington, H. Abdel‑Haleem, D. L. Hyten, P. B. Cregan, J. H. Orf, A. S. Killam, N. Bajjalieh, Z. Li, H. R. Boerma

Department of Agronomy and Horticulture: Faculty Publications

Soybean, rather than nitrogen-containing forages, is the primary source of quality protein in feed formulations for domestic swine, poultry, and dairy industries. As a sole dietary source of protein, soybean is deficient in the amino acids lysine (Lys), threonine (Thr), methionine (Met), and cysteine (Cys). Increasing these amino acids would benefit the feed industry. The objective of the present study was to identify quantitative trait loci (QTL) associated with crude protein (cp) and amino acids in the ‘Benning’ × ‘Danbaekkong’ population. The population was grown in five southern USA environments. Amino acid concentrations as a fraction of cp (Lys/cp, Thr/cp, …


Using A Simple Leaf Color Chart To Estimate Leaf And Canopy Chlorophyll A Content In Maize (Zea Mays), Anthony Nguy-Robertson, Yi Peng, Timothy Arkebauer, David Scoby, James Schepers, Anatoly Gitelson Jan 2015

Using A Simple Leaf Color Chart To Estimate Leaf And Canopy Chlorophyll A Content In Maize (Zea Mays), Anthony Nguy-Robertson, Yi Peng, Timothy Arkebauer, David Scoby, James Schepers, Anatoly Gitelson

Department of Agronomy and Horticulture: Faculty Publications

This study utilized a leaf color chart (LCC) to characterize the variation in leaf chlorophyll and estimate canopy chlorophyll in maize (Zea mays). The LCC consisted of four levels of greenness and was used to sort maize leaves in 2011 for three fields near Mead, Nebraska, USA. Leaf chlorophyll content for each color chart class was determined using two leaf-level sensors. The variation within each LCC class was reasonable (CV < 56%). The darkest color class predominated and indicated adequate fertilization rates using a SPAD. Canopy chlorophyll content was estimated using destructively measured leaf area index (LAI) and the LCC. This approach was verified with a method utilizing canopy reflectance collected by both satellite imagery and a four-band radiometer. The error between the two methods was reasonable (RMSE = 0.55-0.88 g m-2; CV = 25.6-50.4%), indicating that both leaf and canopy chlorophyll can be estimated cheaply without a wet lab or field-based sensors.


First Approximations Of Prescribed Fire Risks Relative To Other Management Techniques Used On Private Lands, Dirac L. Twidwell, Carissa L. Wonkka, Michael T. Sindelar, John R. Weir Jan 2015

First Approximations Of Prescribed Fire Risks Relative To Other Management Techniques Used On Private Lands, Dirac L. Twidwell, Carissa L. Wonkka, Michael T. Sindelar, John R. Weir

Department of Agronomy and Horticulture: Faculty Publications

Fire is widely recognized as a critical ecological and evolutionary driver that needs to be at the forefront of land management actions if conservation targets are to be met. However, the prevailing view is that prescribed fire is riskier than other land management techniques. Perceived risks associated with the application of fire limits its use and reduces agency support for prescribed burning in the private sector. As a result, considerably less cost-share support is given for prescribed fire compared to mechanical techniques. This study tests the general perception that fire is a riskier technique relative to other land management options. …