Agricultural Science Commons^™

High-Throughput Snp Discovery And Assay Development In Common Bean, David L. Hyten, Qijian Song, Edward W. Fickus, Charles V. Quigley, Jong-Sung Lim, Ik-Young Choi, Eun-Young Hwang, Marcial Pastor-Corrales, Perry B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Background: Next generation sequencing has significantly increased the speed at which single nucleotide polymorphisms (SNPs) can be discovered and subsequently used as molecular markers for research. Unfortunately, for species such as common bean (Phaseolus vulgaris L.) which do not have a whole genome sequence available, the use of next generation sequencing for SNP discovery is much more difficult and costly. To this end we developed a method which couples sequences obtained from the Roche 454-FLX system (454) with the Illumina Genome Analyzer (GA) for high-throughput SNP discovery. Results: Using a multi-tier reduced representation library we discovered a total of …

Inoculation With Arbuscular Mycorrhizal Fungi Or Crop Rotation With Mycorrhizal Plants Improves The Growth Of Maize In Limed Acid Sulfate Soil, Hasao Higo, Katsunori Isobe, Dong-Jin Kang, Kazuhiro Ujie, Rhae A. Drijber, Ryuichi Ishii

Department of Agronomy and Horticulture: Faculty Publications

Arbuscular mycorrhizal fungi (AMF) improve the uptake of immobile mineral nutrients such as phosphate, thereby improving plant growth. In acid sulfate soil (ASS), AMF spore density is generally low which impacts root colonization and phosphate uptake. Thus, inoculation may help increase AMF colonization of crops grown in ASS. AMF spore density decreases after cultivation of a non-host crop or bare fallow. In addition, preceding crops affect the growth and yield of subsequent crops. The production of AMF inocula requires AMF-compatible plants. The objective of the present study is to elucidate the effect of preceding crops on the persistence of inoculated …

Fine Mapping Of The Soybean Aphid-Resistance Gene Rag2 In Soybean Pi 200538, Ki-Seung Kim, Curtis B. Hill, Glen L. Hartman, D. L. Hyten, Matthew E. Hudson, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

The discovery of biotype diversity of soybean aphid (SA: Aphis glycines Matsumura) in North America emphasizes the necessity to identify new aphid-resistance genes. The soybean [Glycine max (L.) Merr.] plant introduction (PI) 200538 is a promising source of SA resistance because it shows a high level of resistance to a SA biotype that can overcome the SA-resistance gene Rag1 from ‘Dowling’. The SA-resistance gene Rag2 was previously mapped from PI 200538 to a 10-cM marker interval on soybean chromosome 13 [formerly linkage group (LG) F]. The objective of this study was to fine map Rag2. This fine mapping …

Abundance Of Ssr Motifs And Development Of Candidate Polymorphic Ssr Markers (Barcsoyssr_1.0) In Soybean, Qijian Song, Gaofeng Jia, Youlin Zhu, David Grant, Rex T. Nelson, Eun-Young Hwang, D. L. Hyten, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Simple sequence repeat (SSR) genetic markers, also referred to as microsatellites, function in map-based cloning and for marker-assisted selection in plant breeding. The objectives of this study were to determine the abundance of SSRs in the soybean genome and to develop and test soybean SSR markers to create a database of locus-specific markers with a high likelihood of polymorphism. A total of 210,990 SSRs with di-, tri-, and tetranucleotide repeats of five or more were identified in the soybean whole genome sequence (WGS) which included 61,458 SSRs consisting of repeat units of di- (≥10), tri- (≥8), and tetranucleotide (≥7). Among …

Current And Future Food Demand In Western Australia. Module 1 Scoping Study, Andrew Weinert, Robert R. Rouda

Farm Systems and Economics published reports

Maintaining and growing our food industries are priorities of the Western Australian Government and its Department of Agriculture and Food, Western Australia (DAFWA). Understanding our current food consumption levels, imports, exports and production limitations is critical to the formulation of effective agricultural and food polices.

The WA food industries are affected by several factors that include previous domestic policies and market instruments; general lack of scale; geographical isolation; access to suitable land and water; the availability and use of new technology, communication, processing and transport infrastructure that facilitate efficient marketing; sales and administration; social factors; international tariffs and other trade …

Can R&D Investment Offset The Negative Impact Of Climate Change On Agricultural Productivity?, Nazrul Islam, Ruhul A. Salim

Climate Science Published Reports

Productivity growth in agriculture helps maintain the nation's economic prosperity. However, long-run productivity growth in agriculture faces several challenges such as the potential worsening of climate due to global warming and the loss of productive land due to land use competition, salinity, wind erosion and soil acidity. Strategic policy making and appropriate funding for sustained productivity growth in agriculture is therefore crucial.

Research and development (R&D) to drive innovation is an acknowledged main source of productivity growth. The development and application of technologies generated through R&D boosts agriculture's productivity. Agricultural R&D activities in Australia and in most other developed economies …

Wheat (Triticum Aestivum) Nam Proteins Regulate The Translocation Of Iron, Zinc, And Nitrogen Compounds From Vegetative Tissues To Grain, Brian M. Waters, Cristobal Uauy, Jorge Dubcovsky, Michael A. Grusak

Department of Agronomy and Horticulture: Faculty Publications

The NAM-B1 gene is a NAC transcription factor that affects grain nutrient concentrations in wheat (Triticum aestivum). An RNAi line with reduced expression of NAM genes has lower grain protein, iron (Fe), and zinc (Zn) concentrations. To determine whether decreased remobilization, lower plant uptake, or decreased partitioning to grain are responsible for this phenotype, mineral dynamics were quantified in wheat tissues throughout grain development. Control and RNAi wheat were grown in potting mix and hydroponics. Mineral (Ca, Cu, Fe, K, Mg, Mn, P, S, and Zn) and nitrogen (N) contents of organs were determined at regular intervals to …

Best Management Practices For Corn Production In South Dakota: Websites With Related Information, David E. Clay, Kurtis D. Reitsma

SDSU Extension Circulars

No abstract provided.

Best Management Practices For Corn Production In South Dakota: Recordkeeping, James A. Wilson, Kurtis D. Reitsma, David E. Clay

SDSU Extension Circulars

Recordkeeping is an important component of all crop production systems. The time that is spent maintaining careful records can help to improve the production, profit, and overall efficiency of the production enterprise. Records provide information needed to identify successes and failures.

Best Management Practices For Corn Production In South Dakota: Corn Grain Harvest, Daniel S. Humberg, Richard E. Nicolai, Kurtis D. Reitsma

SDSU Extension Circulars

Corn (grain) harvest can begin when grain moisture drops below 30%. However, most producers will allow corn to dry in the field until grain moisture is between 18 to 25%. Harvesting corn when grain moisture levels are high can result in excessive drying costs, kernel damage, and harvest loss from improper threshing. Allowing corn to stay in the field too long can result in excess harvest loss from stalk lodging, ear drop, or kernel shattering. An optimal harvest depends not only on the condition of the crop but also on the proper maintenance and adjustment of harvest and grain handling …

Best Management Practices For Corn Production In South Dakota: Corn Insect Pests, Michael A. Catangui, Billy W. Fuller, B. Wade French

SDSU Extension Circulars

Historically, the major corn insect pests have been corn rootworms (northern and western), European corn borer, and black cutworm. Bt-corn hybrids are effective against most of these pests. However, Bt-corn hybrids are not effective against corn leaf aphid, corn root aphid, sap beetles, corn rootworm adults, grasshoppers, white grubs, wireworms, seed corn beetle, and seed corn maggots. These insect pests can reduce corn yields. This chapter discusses the management and biology of important corn insect pests commonly observed in South Dakota.

Best Management Practices For Corn Production In South Dakota: Soil Fertility, David E. Clay, Kurtis D. Reitsma

SDSU Extension Circulars

Corn requires sufficient amounts of at least 14 nutrients for optimal production (fig. 7.1). Soil fertility strategies should consider soil residual plant nutrients, cost of fertilizer relative to the value of corn, and management techniques that increase efficiency.

Best Management Practices For Corn Production In South Dakota : Corn Calendar And Troubleshooting Guide, Troy Bauder, Dwayne L. Beck, Sue L. Blodgett, C. Gregg Carlson, Michael A. Catangui, David E. Clay, Sharon A. Clay, Darrell L. Deneke, Martin A. Draper, B. Wade French, Billy W. Fuller, Robert G. Hall, Curt A. Hoffbeck, Daniel S. Humburg, Marie A. Langham, Douglas D. Malo, Mike J. Moechnig, Richard E. Nicolai, Kurtis D. Reitsma, Bradley E. Ruden, Thomas E. Schumacher, Dennis P. Todey, Todd P. Trooien, Hal D. Werner, James A. Wilson, Howard J. Woodard, Leon J. Wrage

SDSU Extension Circulars

No abstract provided.

Best Management Practices For Corn Production In South Dakota : Corn Drying And Storage, Troy Bauder, Dwayne L. Beck, Sue L. Blodgett, C. Gregg Gregg

SDSU Extension Circulars

The goal for a corn drying and storage system is to maintain grain quality without impeding harvesting or shipping. This chapter describes the factors that influence grain quality, proper handling techniques, drying procedures, storage management, and safety precautions.

Best Management Practices For Corn Production In South Dakota: Weeds And Herbicide Injury In Corn, Sharon Clay, Mike J. Moechnig

SDSU Extension Circulars

This chapter addresses weed problems and herbicide injuries that commonly occur in South Dakota corn production. Photographs and information are provided to assist producers in managing weed pressure and to help identify herbicide injury symptoms resulting from improper application, unintentional exposure, or adverse environmental conditions.

Best Management Practices For Corn Production In South Dakota: Useful Calculations: Corn Yields And Storage Requirements, Kurtis D. Reitsma, David Clay, Sharon Clay, C. Gregg Calson

SDSU Extension Circulars

No abstract provided.

Best Management Practices For Corn Production In South Dakota, Troy Bauder, Dwayne L. Beck, Sue L. Blodgett, C. Gregg Carlson, Michael A. Catangui, David E. Clay, Sharon A. Clay, Darrell L. Deneke, Martin A. Draper, B. Wade French, Billy W. Fuller, Robert G. Hall, Curt A. Hoffbeck, Daniel S. Humburg, Marie A. Langham, Douglas D. Malo, Mike J. Moechnig, Richard E. Nicolai, Kurtis D. Reitsma, Bradley E. Ruden, Thomas E. Schumacher, Dennis P. Todey, Todd P. Trooien, Hal D. Werner, James A. Wilson, Howard J. Woodard, Leon J. Wrage

SDSU Extension Circulars

Table of Contents:

Introduction [Page] 1

1. Corn Growth and Development [Page] 3

2. Corn Hybrid Selection [Page] 9

3. Corn Planting Guide [Page] 13

4. Seasonal Hazards—Frost, Hail, Drought, and Flooding [Page] 17

5. Tillage, Crop Rotations, and Cover Crops [Page] 21

6. Irrigation and Salt Management [Page] 31

7. Soil Fertility [Page] 39

8. Corn Insect Pests [Page] 49

9. Corn Diseases in South Dakota [Page] 59

10. Weeds and Herbicide Injury in Corn [Page] 71

11. Corn Grain Harvest [Page] 93

12. Corn Drying and Storage [Page] 99

13. Recordkeeping [Page] 107

14. Useful Calculations: Corn Yields …

Best Management Practices For Corn Production In South Dakota : Corn Diseases In South Dakota, Troy Bauder, Dwayne L. Beck, Sue L. Blodgett, C. Gregg Carlson, Michael A. Catangui, David E. Clay, Sharon A. Clay, Darrell L. Deneke, Martin A. Draper, B. Wade French, Billy W. Fuller, Robert G. Hall, Curt A. Hoffbeck, Daniel S. Humburg, Marie A. Langham, Douglas D. Malo, Mike J. Moechnig, Richard E. Nicolai, Kurtis D. Reitsma, Bradley E. Ruden, Thomas E. Schumacher, Dennis P. Todey, Todd P. Trooien, Hal D. Werner, James A. Wilson, Howard J. Woodard, Leon J. Wrage

SDSU Extension Circulars

Corn diseases can be separated into 1) seed and seedling diseases, 2) root-infecting nematodes, 3) leaf diseases, 4) rusts, 5) stalk rots, and 6) ear and grain molds. Yield losses can result from diseases directly reducing yields or from harvestability, spoilage, or marketing and/or use issues associated with mycotoxin contamination. See Table 9.1 for corn disease management information. Attention to optimal seed quality, hybrid selection, seed treatments, weed and insect control, crop rotation, soil fertility, irrigation, and prompt harvest can reduce disease impacts. This chapter discusses aspects of recognizing and managing South Dakota corn diseases.

Proceedings Of The 36th Annual Meeting, Southern Soybean Disease Workers (March 11-12, 2009, Pensacola Beach, Florida), Clayton A. Hollier, Jason Bond, Stephen R. Koenning

Southern Soybean Disease Workers: Conference Proceedings

Contents

Contributed papers (Jason Bond, moderator)

Effects of Diseases on Soybean Yields in the United States, 1996 to 2006. Allen Wrather and Steve Koenning

Evaluation of Soybean Cultivars for Resistance to Soybean Phomopsis Seed Decay in the Mississippi Delta. Shuxian Li, Debbie Boykin, Gabriel Sciumbato, Allen Wrather, Grover Shannon, and David Sleper

The impact of timing and fungicides on soybean disease management. Boyd Padgett, Myra Purvis, Allen Hogan, and Clayton Hollier

Foliar Fungicide Impact on Frogeye Leaf Spot, Yield and Net Returns in Mississippi Soybeans. Tom Allen, Ben Spinks, Billy Moore, Alan Blaine, and Dan Poston

SCE 08: Standards for …

Severity Of Root Rot In Mature Subterranean Clover And Associated Fungal Pathogens In The Wheatbelt Of Western Australia, Tim Scanlon, Tiernan A. O’Rourke, Martin J. Barbetti, Megan H. Ryan, Len J. Wade, Alan C. Mckay, Ian T. Riley, Hua Li, Krishnapillai Sivasithamparam

Journal articles

Pasture decline is considered to be a serious challenge to agricultural productivity of subterranean clover across southern Australia. Root disease is a significant contributing factor to pasture decline. However, root disease assessments are generally carried out in the early part of the growing season and in areas predominantly sown to permanent pastures. For this reason, in spring 2004, a survey was undertaken to determine the severity of root disease in mature subterranean clover plants in pastures located in the wheatbelt of Western Australia. DNA-based soil assays were used to estimate population density in the soil of a variety of soil-borne …

Intsormil 2009 Annual Report, John M. Yohe, Kimberly Christiansen, Joan Frederick

INTSORMIL Impacts and Bulletins

The 2009 INTSORMIL Annual Report presents the progress and notable achievements by the Sorghum, Millet and Other Grains CRSP during the period of September 30, 2008 through September 29, 2009. These results are an outcome of partnerships between scientists at six U.S. Land Grant Universities (Kansas State University, University of Nebraska, The Ohio State University, Purdue University, Texas A&M University and West Texas A&M University), scientists of the Agricultural Research Service of the U. S. Department of Agriculture at Tifton, Georgia and the National Agricultural Research Systems (NARS) and National Universities in sixteen countries in Central America, West Africa, East …

An Inventory And Condition Survey Of The Lower Murchison River Area, Western Australia, P Hennig

Technical Bulletins

The inventory and condition survey of the lower Murchison River area, undertaken by the Department of Agriculture and Food, Western Australia (DAFWA) between 2002 and 2003, describes and maps the natural resources of the region’s pastoral leasehold land. This survey report provides a baseline record of the existence and condition of the natural area’s resources, to assist with the planning and implementation of land management practices. The report identified and described the condition of soils, landforms, vegetation, habitat, ecosystems, and declared plants and animals. It also assessed the impact of pastoralism and made land management recommendations. This survey report presents …

Food, Fibre And Flowers, Fuelling The Economy With Innovation And Science, Department Of Agriculture And Food, Western Australia

Horticulture published reports

The Department of Agriculture and Food is a world leader in the rapidly growing field of agri-food and fibre research and development, providing significant benefits for Westen Australian producers, the food industry sector and consumers.

The development of value-added products through innovation and science, which deliver real opportunities for the State's agri-food export capacity, is also important.

Seven examples of the Department's science and innovation.

Plan To Support Horticulture Industry Development 2009-2012, Department Of Agriculture And Food, Western Australia

Horticulture published reports

The Plan to Support Horticulture Industry Development ('the Plan') recognises that healthy and profitable Western Australian agricultural industries are integral to the economic wellbeing of regional and rural communities. The Plan promotes a progressive and productive horticultural industry through efficient use of natural resources, high standards of biosecurity, modern marketing, value-adding and research to enhance continuous improvement throughout the supply chain from producer to consumer.

Plan To Support Horticulture Industry Development 2009 - 2012 - For Discussion, Department Of Agriculture And Food, Western Australia

Horticulture published reports

The State Government's increased investment in agriculture and food recognises the integral contribution this sector makes to the economy of Western Australia.

It is a key industry which will support Western Australia's growth beyond periods of boom and through the economic rebuilding phase ahead. Ensuring the State remains highly competitive in both domestic and international markets is vital to the future of our economy

Public funds must be 'money well spent'. This means ensuring the right direction, efficiency and effectiveness of the Department of Agriculture and Food's programs. The department must focus its efforts on economic development - this is …

Letter From The Dean, Lalit Verma

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Symbiotic Effects Of The Fungus Glomus Sp. On Chromium(Iii), Chromium(Vi), And Lead(Ii) Uptake By Mesquite (Prosopis Sp.): A Novel Method To Remediate Heavy Metals, Jack A. Arias

Open Access Theses & Dissertations

The indiscriminate disposal of lead (Pb) and chromium (Cr) containing wastes has resulted in a detrimental impact on environmental health. Lead and Cr are in the EPA priority list due to their degree of toxicity on humans, animals, plants, and other living organisms. The removal of toxic wastes involves technologies that are expensive, sometimes incomplete, and could represent health hazards. In addition, site restoration after contaminant removal encompasses time and technological resources. Phytoremediation, the use of plants alone or associated with microorganisms, represents a potentially cost-effective option in the long term management of contaminated sites. Various plants known as "hyperaccumulators" …

Farmers And Nature Conservation: What Is Known About Attitudes, Context Factors And Actions Affecting Conservation?, Johan Ahnström, Jenny Höckert, Hanna L. Bergea, Charles A. Francis, Peter Skelton, Lars Hallgren

Department of Agronomy and Horticulture: Faculty Publications

Farmers’ attitudes towards viability of specific conservation practices or actions strongly impact their decisions on adoption and change. This review of ‘attitude’ information reveals a wide range of perceptions about what conservation means and what the impacts of adoption will mean in economic and environmental terms. Farmers operate in a tight financial situation, and in parts of the world they are highly dependent on government subsidies, and cannot afford to risk losing that support. Use of conservation practices is most effective when these are understood in the context of the individual farm, and decisions are rooted in land and resource …

Bulked Segregant Analysis Using The Goldengate Assay To Locate The Rpp3 Locus That Confers Resistance To Soybean Rust In Soybean, D. L. Hyten, James R. Smith, Reid D. Frederick, Mark L. Tucker, Qijian Song, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Few resistance loci to soybean rust (SBR), caused by Phakopsora pachyrhizi Syd., have been genetically mapped and linked to molecular markers that can be used for marker assisted selection. New technologies are available for single nucleotide polymorphism (SNP) genotyping that can be used to rapidly map traits controlled by single loci such as resistance to SBR. Our objective was to demonstrate that the highthroughput SNP genotyping method known as the GoldenGate assay can be used to perform bulked segregant analysis (BSA) to fi nd candidate regions to facilitate effi cient mapping of a dominant resistant locus to SBR designated Rpp3 …

Mapping And Confirmation Of A New Allele At Rpp1 From Soybean Pi 594538a Conferring Rb Lesion–Type Resistance To Soybean Rust, Nanda Chakraborty, Joe Curley, Reid D. Frederick, D. L. Hyten, Randall L. Nelson, Glen L. Hartman, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

Soybean rust, caused by Phakopsora pachyrhizi (H. Sydow & Sydow), is a destructive soybean [Glycine max (L.) Merr.] disease and identification of new resistance genes is essential for effective rust management. Our research objectives were to map and confirm the location of resistance gene(s) in PI 594538A using a population of 98 F_3:4 lines from across between PI 594538A (reddish-brown [RB] lesions) and the susceptible cultivar Loda (tan [TAN] lesions). The lines were inoculated with the P. pachyrhizi isolate ZM01-1 from Zimbabwe. The RB resistance in PI 594538A mapped on linkage group G as a single dominant gene. …