Open Access. Powered by Scholars. Published by Universities.®

Plant Sciences Commons

Open Access. Powered by Scholars. Published by Universities.®

Articles 91 - 114 of 114

Full-Text Articles in Plant Sciences

Predicting Flavonoid Ugt Regioselectivity, Arthur R. Jackson, Debra Knisley, Cecilia Mcintosh, Phillip Pfeiffer Dec 2010

Predicting Flavonoid Ugt Regioselectivity, Arthur R. Jackson, Debra Knisley, Cecilia Mcintosh, Phillip Pfeiffer

Cecilia A. McIntosh

Machine learning was applied to a challenging and biologically significant protein classification problem: the prediction of avonoid UGT acceptor regioselectivity from primary sequence. Novel indices characterizing graphical models of residues were proposed and found to be widely distributed among existing amino acid indices and to cluster residues appropriately. UGT subsequences biochemically linked to regioselectivity were modeled as sets of index sequences. Several learning techniques incorporating these UGT models were compared with classifications based on standard sequence alignment scores. These techniques included an application of time series distance functions to protein classification. Time series distances defined on the index sequences were …


Phenotypic Leaf Variation In Avicennia Marina In Tropical Australia: Can Discrete Subpopulations Be Recognised In The Field?, Peter Saenger, Lyndon O. Brooks Nov 2010

Phenotypic Leaf Variation In Avicennia Marina In Tropical Australia: Can Discrete Subpopulations Be Recognised In The Field?, Peter Saenger, Lyndon O. Brooks

Dr Lyndon O Brooks

The geographic patterns of phenotypic variation in leaf morphology traits were studied in the mangrove Avicennia marina (Forsk.) Vierh. in tropical Queensland, Australia, to determine whether discrete subpopulations could be recognised in the field. Significant differences in the various leaf characters occurred among the sites, which were not explained by longitude or latitude, nor by inter-site distances. Hierarchical cluster analysis of the estimated site means showed no coherent geographical groupings of the sites, suggesting that site populations do not follow a differentiation by distance model. Principal component analysis showed that site groupings with consistent leaf morphological characteristics could be identified, …


Integrating Geographic Information Systems And Multi-Criteria Analysis To Assess Suitable Species And Plantation Sites: A Case Study Assessing Elaeocarpus Grandis And Gevillea Robusta Suitability On The Nsw North Coast, Kristin Den Exter Oct 2010

Integrating Geographic Information Systems And Multi-Criteria Analysis To Assess Suitable Species And Plantation Sites: A Case Study Assessing Elaeocarpus Grandis And Gevillea Robusta Suitability On The Nsw North Coast, Kristin Den Exter

Dr Kristin den Exter

No abstract provided.


Floristic Investigation Of Crooked Creek Community Of Juan Solomon Park, Indianapolis Indiana, Raelene M. Crandall, Rebecca W. Dolan Sep 2010

Floristic Investigation Of Crooked Creek Community Of Juan Solomon Park, Indianapolis Indiana, Raelene M. Crandall, Rebecca W. Dolan

Rebecca W. Dolan

The protection of plant resources in urban areas is a growing conservation concern. Inventory activities that document species presence and stewardship plans that protect and enhance these areas are needed. The results of a botanical inventory of the Crooked Creek Community Juan Solomon Park in Indianapolis, Indiana, are reported in this paper. The 46-acre park contains three distinct habitats, supporting a wide variety of plants. One hundred seventy-nine vascular plant species from 64 families were identified, including 53 (29.6%) non-native species that are naturalizing within the park. Despite its high percentage of alien species and urban setting, the park is …


Carbon Bio-Sequestration Within The Phytoliths Of Economic Bamboo Species, Jeffrey Parr, Leigh Sullivan, Bihua Chen, Gongfu Ye, Zheng Wiepeng May 2010

Carbon Bio-Sequestration Within The Phytoliths Of Economic Bamboo Species, Jeffrey Parr, Leigh Sullivan, Bihua Chen, Gongfu Ye, Zheng Wiepeng

Jeffrey Parr

The rates of carbon bio-sequestration within silica phytoliths of the leaf litter of 10 economically important bamboo species indicates that (a) there is considerable variation in the content of carbon occluded within the phytoliths (PhytOC) of the leaves between different bamboo species, (b) this variation does not appear to be directly related to the quantity of silica in the plant but rather the efficiency of carbon encapsulation by the silica. The PhytOC content of the species under the experimental conditions ranged from 1.6% to 4% of the leaf silica weight. The potential phytolith carbon bio-sequestration rates in the leaf-litter component …


Land From The Sea: The Mangrove Afforestation Program Of Bangladesh, Peter Saenger, N A. Siddiqi May 2010

Land From The Sea: The Mangrove Afforestation Program Of Bangladesh, Peter Saenger, N A. Siddiqi

Emeritus Professor Peter Saenger

The coastal areas of Bangladesh have a high cyclone frequency. The protection from cyclone damage afforded by the natural mangrove forests of the Sundarbans, led the Forest Department in 1966 to initiate a mangrove afforestation programme. These initial plantings proved highly successful in protecting and stabilizing coastal areas, and led to a large-scale mangrove afforestation initiative. To date, approximately 120 000 ha of mangroves have been planted. Nursery and planting techniques have been developed for the major species, while additional species are still being investigated. As a result of the extensive monospecific plantations, however, outbreaks of two major insect pest …


Capturing Genetic Variation During Ecological Restorations: An Example From Kankakee Sands In Indiana, Rebecca W. Dolan, Deborah L. Marr, Andrew Schnabel Apr 2010

Capturing Genetic Variation During Ecological Restorations: An Example From Kankakee Sands In Indiana, Rebecca W. Dolan, Deborah L. Marr, Andrew Schnabel

Rebecca W. Dolan

Genetic variation in populations, both natural and restored, is usually considered crucial for response to short term environmental stresses and for long term evolutionary change. To have the best chance of successful long-term survival, restored populations should reflect the extant variation found in remnants, but restored sites may suffer from genetic bottlenecks as a result of founder effects. Kankakee Sands is a large-scale restoration being conducted by The Nature Conservancy (TNC) in northwestern Indiana. Our goal was to test for loss of genetic variation in restored plant populations by comparing them with TNC’s seed source nursery and with local remnant …


Capturing Genetic Variation During Ecological Restorations: An Example From Kankakee Sands In Indiana, Rebecca W. Dolan, Deborah L. Marr, Andrew Schnabel Apr 2010

Capturing Genetic Variation During Ecological Restorations: An Example From Kankakee Sands In Indiana, Rebecca W. Dolan, Deborah L. Marr, Andrew Schnabel

Rebecca W. Dolan

Genetic variation in populations, both natural and restored, is usually considered crucial for response to short term environmental stresses and for long term evolutionary change. To have the best chance of successful long-term survival, restored populations should reflect the extant variation found in remnants, but restored sites may suffer from genetic bottlenecks as a result of founder effects. Kankakee Sands is a large-scale restoration being conducted by The Nature Conservancy (TNC) in northwestern Indiana. Our goal was to test for loss of genetic variation in restored plant populations by comparing them with TNC’s seed source nursery and with local remnant …


Comparative Genetics Of Seven Plants Endemic To Florida’S Lake Wales Ridge, Eric S. Menges, Rebecca W. Dolan, Rebecca Yahr, Doria R. Gordan Apr 2010

Comparative Genetics Of Seven Plants Endemic To Florida’S Lake Wales Ridge, Eric S. Menges, Rebecca W. Dolan, Rebecca Yahr, Doria R. Gordan

Rebecca W. Dolan

Here we submit that mathematical tools used in population viability analysis can be used in conjunction with floristic and faunistic surveys to predict changes in biogeographic range. We illustrate our point by summarizing the results of a demographic study of Lobelia boykinii. In this study we used deterministic and stochastic matrix models to estimate the growth rate and to predict the time to extinction for three populations growing in the Carolina bays. The stochastic model better discriminated among the fates of the three populations. It predicted extinction for two populations in the next 25 years but no extinction of the …


The Clute Holotypes And The Herbarium Of Willard Nelson Clute In The Friesner Herbarium Of Butler University, Rebecca W. Dolan Apr 2010

The Clute Holotypes And The Herbarium Of Willard Nelson Clute In The Friesner Herbarium Of Butler University, Rebecca W. Dolan

Rebecca W. Dolan

The herbarium of Willard Nelson Clute is housed in the Friesner Herbarium (BUT). Clute, co-founder of the American Fern Society, was a staff member at Butler University in the 1920's and 30's. His collection of ferns and fern allies from the tum of the century is significant for its selected regional coverage and for type specimens of taxa described by Clute and other fern specialists of the day.


Genetic Variation In Past And Current Landscapes: Conservation Implications Based On Six Endemic Florida Scrub Plants, Eric S. Menges, Rebecca W. Dolan, Robert Pickert, Rebecca Yahr, Doria R. Gordon Mar 2010

Genetic Variation In Past And Current Landscapes: Conservation Implications Based On Six Endemic Florida Scrub Plants, Eric S. Menges, Rebecca W. Dolan, Robert Pickert, Rebecca Yahr, Doria R. Gordon

Rebecca W. Dolan

If genetic variation is often positively correlated with population sizes and the presence of nearby populations and suitable habitats, landscape proxies could inform conservation decisions without genetic analyses. For six Florida scrub endemic plants (Dicerandra frutescens, Eryngium cuneifolium, Hypericum cumulicola, Liatris ohlingerae, Nolina brittoniana, and Warea carteri), we relate two measures of genetic variation, expected heterozygosity and alleles per polymorphic locus (APL), to population size and landscape variables. Presettlement areas were estimated based on soil preferences and GIS soils maps. Four species showed no genetic patterns related to population or landscape factors. The other two species showed significant but inconsistent …


Beethoven: Patriotism And Social Justice, Fathi Habashi Feb 2010

Beethoven: Patriotism And Social Justice, Fathi Habashi

Fathi Habashi

The great composer Ludwig van Beethoven was not only an exceptional musician but also a man of great ideals who expressed social justice in his music


Mining And Civilization, An Illustrated History, Fathi Habashi Dec 2009

Mining And Civilization, An Illustrated History, Fathi Habashi

Fathi Habashi

Mining and Civilization has been conceived to compliment the author's two books History of Metallurgy and Readings in Historical Metallurgy and to fill a gap in the literature. It is difficult to study the history of metallurgy without studying the history of mining at the same time. Each time the author visits ancient ruins or examines an ancient stone statue he recalls the work of miners who brought the material from a quarry so that the sculptor can create a work of art. History of mining, quarrying, and stone carving is history of civilization.


Functional Transition In The Floral Receptacle Of The Sacred Lotus (Nelumbo Nucifera): From Thermogenesis To Photosynthesis, R. E. Miller, J. R. Watling, Sharon A. Robinson Nov 2009

Functional Transition In The Floral Receptacle Of The Sacred Lotus (Nelumbo Nucifera): From Thermogenesis To Photosynthesis, R. E. Miller, J. R. Watling, Sharon A. Robinson

Sharon Robinson

The receptacle of the sacred lotus is the main source of heat during the thermogenic stage of floral development. Following anthesis, it enlarges, greens and becomes a fully functional photosynthetic organ. We investigated development of photosynthetic traits during this unusual functional transition. There were two distinct phases of pigment accumulation in receptacles. Lutein and photoprotective xanthophyll cycle pigments accumulated first with 64% and 95% of the maximum, respectively, present prior to anthesis. Lutein epoxide comprised 32% of total carotenoids in yellow receptacles, but declined with development. By contrast, more than 85% of maximum total chlorophyll, β-carotene and Rubisco were produced …


Responses Of Plants In Polar Regions To Uvb Exposure : A Meta-Analysis, K. K. Newsham, Sharon A. Robinson Nov 2009

Responses Of Plants In Polar Regions To Uvb Exposure : A Meta-Analysis, K. K. Newsham, Sharon A. Robinson

Sharon Robinson

We report a meta-analysis of data from 34 field studies into the effects of UV-B radiation on Arctic and Antarctic bryophytes and angiosperms. The studies measured plant responses to decreases in UV-B radiation under screens, natural fluctuations in UV-B irradiance, or increases in UV-B radiation applied from fluorescent UV lamps. Exposure to UV-B radiation was found to increase the concentrations of UV-B absorbing compounds in leaves or thalli by 7% and 25% (expressed on a mass or area basis, respectively). UV-B exposure also reduced aboveground biomass and plant height by 15% and 10%, respectively, and increased DNA damage by 90%. …


Genetic Structure Of East Antarctic Populations Of The Moss Ceratodon Purpureus, L. J. Clarke, D. J. Ayre, Sharon A. Robinson Nov 2009

Genetic Structure Of East Antarctic Populations Of The Moss Ceratodon Purpureus, L. J. Clarke, D. J. Ayre, Sharon A. Robinson

Sharon Robinson

The capacity of the polar flora to adapt is of increasing concern given current and predicted environmental change in these regions. Previous genetic studies of Antarctic mosses have been of limited value due to a lack of variation in the markers or non-specificity of the methods used. We examined the power of five microsatellite loci developed for the cosmopolitan moss Ceratodon purpureus to detect genetically distinct clones and infer the distribution of clones within and among populations from the Windmill Islands, East Antarctica. Our microsatellite data suggest extraordinarily high levels of variation reported in RAPD studies were artificially elevated by …


Two Cys Or Not Two Cys? That Is The Question; Alternative Oxidase In The Thermogenic Plant Sacred Lotus, Nicole M. Grant, Yoshihiko Onda, Yusuke Kakizaki, Kkikukatsu Ito, Jennifer R. Watling, Sharon A. Robinson Nov 2009

Two Cys Or Not Two Cys? That Is The Question; Alternative Oxidase In The Thermogenic Plant Sacred Lotus, Nicole M. Grant, Yoshihiko Onda, Yusuke Kakizaki, Kkikukatsu Ito, Jennifer R. Watling, Sharon A. Robinson

Sharon Robinson

Sacred lotus (Nelumbo nucifera) regulates temperature in its floral chamber to 32°C to 35°C across ambient temperatures of 8°C to 40°C with heating achieved through high alternative pathway fluxes. In most alternative oxidase (AOX) isoforms, two cysteine residues, Cys1 and Cys2, are highly conserved and play a role in posttranslational regulation of AOX. Further control occurs via interaction of reduced Cys1 with α-keto acids, such as pyruvate. Here, we report on the in vitro regulation of AOX isolated from thermogenic receptacle tissues of sacred lotus. AOX protein was mostly present in the reduced form, and only a small fraction could …


Researches On Copper. History & Metallurgy, Fathi Habashi Feb 2009

Researches On Copper. History & Metallurgy, Fathi Habashi

Fathi Habashi

The present volume is a collection of selected papers dealing with the extractive metallurgy of copper published by the author and his coworkers. They are reproduced here in a facsimile edition in 240 pages. In addition ten new chapters were specially written in 150 pages. The book is fully illustrated by many colored pictures, flowsheets, and diagrams. It is hoped that it will be useful for students, engineers, chemists, geologists, and for research workers.


Gold. History, Metallurgy, Culture, Fathi Habashi Feb 2009

Gold. History, Metallurgy, Culture, Fathi Habashi

Fathi Habashi

Gold, the first metal used by man, has a special place among metals. It plays an important role in society and in world economics. It caused unprecedented mass migrations on three continents, and at least one war. It was responsible for creating many large cities, is highly prized, has been the inspiration of numerous myths, was the ultimate goal of alchemists, stored in the vaults of banks, widely on display in oriental bazaars, and is generously used in decorating churches and temples. The present volume is composed of two parts: a collection of selected papers published by the author on …


Understanding The Tolerance Of Antarctic Mosses To Climate Change, Sharon A. Robinson, L J. Clarke Feb 2009

Understanding The Tolerance Of Antarctic Mosses To Climate Change, Sharon A. Robinson, L J. Clarke

Sharon Robinson

Climate change is expected to affect the high latitudes first and most severely, rendering Antarctica one of the most significant baseline environments for the study of global climate change. Despite this, there have been few long-term studies of the response of Antarctic vegetation to climate change. The Windmill Islands region supports some of the most extensive and best developed vegetation on continental Antarctica, with lush, green mossbeds along many of the lakes and melt streams close to Casey station. Over the past 12 years my University of Wollongong colleagues and I have studied the mosses of this region to better …


The Plant Ontology Database: A Community Resource For Plant Structure And Developmental Stages Controlled Vocabulary And Annotations, Shulamit Avraham, Chih-Wei Tung, Katica Ilic, Pankaj Jaiswal, Elizabeth A. Kellogg, Susan Mccouch, Anuradha Pujar, Leonore Reiser, Seung Yon Rhee, Martin M. Sachs, Mary L. Schaeffer, Lincoln Stein, Peter Stevens, Leszek Vincent, Felipe Zapata, Doreen Ware Dec 2007

The Plant Ontology Database: A Community Resource For Plant Structure And Developmental Stages Controlled Vocabulary And Annotations, Shulamit Avraham, Chih-Wei Tung, Katica Ilic, Pankaj Jaiswal, Elizabeth A. Kellogg, Susan Mccouch, Anuradha Pujar, Leonore Reiser, Seung Yon Rhee, Martin M. Sachs, Mary L. Schaeffer, Lincoln Stein, Peter Stevens, Leszek Vincent, Felipe Zapata, Doreen Ware

Peter Stevens

The Plant Ontology Consortium (POC, http://www.plantontology.org ) is a collaborative effort among model plant genome databases and plant researchers that aims to create, maintain and facilitate the use of a controlled vocabulary (ontology) for plants. The ontology allows users to ascribe attributes of plant structure (anatomy and morphology) and developmental stages to data types, such as genes and phenotypes, to provide a semantic framework to make meaningful cross-species and database comparisons. The POC builds upon groundbreaking work by the Gene Ontology Consortium (GOC) by adopting and extending the GOC's principles, existing software and database structure. Over the past year, POC …


In The Heat Of The Law, It's Not Just Steam: Geothermal Resources And The Impact On Thermophile Biodiversity, Donald J. Kochan, Tiffany Grant Dec 2006

In The Heat Of The Law, It's Not Just Steam: Geothermal Resources And The Impact On Thermophile Biodiversity, Donald J. Kochan, Tiffany Grant

Donald J. Kochan

Significant research has been conducted into the utilization of geothermal resources as a ‘green’ energy source. However, minimal research has been conducted into geothermal resource utilization and depletion impacts on thermophile biodiversity. Thermophiles are organisms which have adapted over millions of year to extreme temperature and chemical compositions and exist in hot springs and other geothermal resources. Their ability to withstand high temperatures makes them invaluable to scientific and medical research. Current federal and California case law classify geothermal resources as a mineral, not a water resource. Acquisition of rights to develop a geothermal resource owned or reserved by the …


Food Based Approaches For A Healthy Nutrition In Africa, Mamoudou Hama Dicko May 2004

Food Based Approaches For A Healthy Nutrition In Africa, Mamoudou Hama Dicko

Pr. Mamoudou H. DICKO, PhD

The latest estimates of the FAO demonstrate the problems of the fight against hunger. These problems are manifested by the ever-increasing number of chronically undernourished people worldwide. Their numbers during the 1999-2001 period were estimated at about 840 million of which 798 million live in developing countries. Sub-Saharan Africa alone represented 198 million of those. In this part of Africa the prevalence of undernourishment ranges from 5-34%, causing growth retardation and insufficient weight gain among one third of the children under five years of age and resulting in a mortality of 5-15% among these children. Malnutrition resulting from undernourishment is …


Removal Of Phosphorus From Static Sewage Effluent By Waterhyacinth, W Harold Ornes Dec 1974

Removal Of Phosphorus From Static Sewage Effluent By Waterhyacinth, W Harold Ornes

W. Harold Ornes

Waterhyacinth [Eichhornia crassipes (Mart.) Solms] was grown in static sewage effluent during May to July 1974 in outdoor concrete containers with a capacity of 760 liters and a surface area of 1.66 m². The plants were removed weekly from one-half of the surface area of the containers during 5-wk growth periods. Tissue phosphorus (P) and nitrogen (N), plant productivity, and some parameters of water quality were measured. A maximum uptake of 5,500 µg of P/g dry weight of plant material occurred when the level of orthophosphate phosphorus (available P) in the effluent was 1.1 µg/ml. Phosphorus in the effluent was …