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Full-Text Articles in Neuroscience and Neurobiology

Toward A Manifold Encoding Neural Responses, Luciano Dyballa, Andra M. Rudzite, Mahmood S. Hoseini, Mishek Thapa, Michael P. Stryker, Greg D. Field, Steven W. Zucker May 2023

Toward A Manifold Encoding Neural Responses, Luciano Dyballa, Andra M. Rudzite, Mahmood S. Hoseini, Mishek Thapa, Michael P. Stryker, Greg D. Field, Steven W. Zucker

MODVIS Workshop

Understanding circuit properties from physiological data presents two challenges: (i) recordings do not reveal connectivity, and (ii) stimuli only exercise circuits to a limited extent. We address these challenges for the mouse visual system with a novel neural manifold obtained using unsupervised algorithms. Each point in our manifold is a neuron; nearby neurons respond similarly in time to similar parts of a stimulus ensemble. This ensemble includes drifting gratings and flows, i.e., patterns resembling what a mouse would “see” running through fields.

Regarding (i), our manifold differs from the standard practice in computational neuroscience: embedding trials in neural coordinates. Topology …


Effect Of Noise On Mutually Inhibiting Pyramidal Cells In Visual Cortex: Foundation Of Stochasticity In Bi-Stable Perception, Naoki Kogo, Felix Kern, Thomas Nowotny, Raymond Van Ee, Richard Van Wezel, Takeshi Aihara May 2018

Effect Of Noise On Mutually Inhibiting Pyramidal Cells In Visual Cortex: Foundation Of Stochasticity In Bi-Stable Perception, Naoki Kogo, Felix Kern, Thomas Nowotny, Raymond Van Ee, Richard Van Wezel, Takeshi Aihara

MODVIS Workshop

Bi-stable perception has been an important tool to investigate how visual input is interpreted and how it reaches consciousness. To explain the mechanisms of this phenomenon, it has been assumed that a mutual inhibition circuit plays a key role. It is possible that this circuit functions to resolve ambiguity of input image by quickly shifting the balance of competing signals in response to conflicting features. Recently we established an in vitro neural recording system combined with computerized connections mediated by model neurons and synapses (“dynamic clamp” system). With this system, mutual inhibition circuit between two pyramidal cells from primary visual …


The Impact Of Cortical State On Neural Coding And Behavior, Charles Beaman Aug 2016

The Impact Of Cortical State On Neural Coding And Behavior, Charles Beaman

Dissertations & Theses (Open Access)

The brain is never truly silent – up to 80% of its energy budget is expended during ongoing activity in the absence of sensory input. Previous research has shown that sensory neurons are not exclusively influenced by external stimuli but rather reflect interactions between sensory inputs and the ongoing activity of the brain. Yet, whether fluctuations in the state of cortical networks influence sensory coding in neural circuits and the behavior of the animal are unknown. To shed light on this issue, we conducted multi-unit electrophysiology experiments in visual areas V1 and V4 of behaving monkeys. First, we studied the …


Experimental And Computational Studies Of Cortical Neural Network Properties Through Signal Processing, Wesley Patrick Clawson May 2016

Experimental And Computational Studies Of Cortical Neural Network Properties Through Signal Processing, Wesley Patrick Clawson

Graduate Theses and Dissertations

Previous studies, both theoretical and experimental, of network level dynamics in the cerebral cortex show evidence for a statistical phenomenon called criticality; a phenomenon originally studied in the context of phase transitions in physical systems and that is associated with favorable information processing in the context of the brain. The focus of this thesis is to expand upon past results with new experimentation and modeling to show a relationship between criticality and the ability to detect and discriminate sensory input. A line of theoretical work predicts maximal sensory discrimination as a functional benefit of criticality, which can then be characterized …


Characterizing Receptive Field Selectivity In Area V2, Corey M. Ziemba, Robbe Lt Goris, J Anthony Movshon, Eero P. Simoncelli May 2015

Characterizing Receptive Field Selectivity In Area V2, Corey M. Ziemba, Robbe Lt Goris, J Anthony Movshon, Eero P. Simoncelli

MODVIS Workshop

The computations performed by neurons in area V1 are reasonably well understood, but computation in subsequent areas such as V2 have been more difficult to characterize. When stimulated with visual stimuli traditionally used to investigate V1, such as sinusoidal gratings, V2 neurons exhibit similar selectivity (but with larger receptive fields, and weaker responses) relative to V1 neurons. However, we find that V2 responses to synthetic stimuli designed to produce naturalistic patterns of joint activity in a model V1 population are more vigorous than responses to control stimuli that lacked this naturalistic structure (Freeman, et. al. 2013). Armed with this signature …


A Recurrent Multilayer Model With Hebbian Learning And Intrinsic Plasticity Leads To Invariant Object Recognition And Biologically Plausible Receptive Fields, Michael Teichmann, Fred H. Hamker May 2015

A Recurrent Multilayer Model With Hebbian Learning And Intrinsic Plasticity Leads To Invariant Object Recognition And Biologically Plausible Receptive Fields, Michael Teichmann, Fred H. Hamker

MODVIS Workshop

Much effort has been spent to develop biologically plausible models for different aspects of the processing in the visual cortex. However, most of these models are not investigated with respect to the functionality of the neural code for the purpose of object recognition comparable to the framework of deep learning in the machine learning community.
We developed a model of V1 and V2 based on anatomical evidence of the layered architecture, using excitatory and inhibitory neurons where the connectivity to each neuron is learned in parallel. We address learning by three different mechanisms of plasticity: intrinsic plasticity, Hebbian learning with …