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Full-Text Articles in Genetics and Genomics
Analysis Of Edna To Assess Effects Of Water Quality On Freshwater Fungal Diversity In A Virginia Coastal Watershed, Lauren French
Analysis Of Edna To Assess Effects Of Water Quality On Freshwater Fungal Diversity In A Virginia Coastal Watershed, Lauren French
Undergraduate Honors Theses
Freshwater fungi comprise a phylogenetically and functionally diverse group which contributes to wide-ranging ecosystem processes in aquatic systems. Saprotrophic fungi convert detritus into nutrient-rich food sources for fish and invertebrates, whereas pathogenic and parasitic fungi can cause disease and population declines of other aquatic organisms. With their diverse and important roles, changes in freshwater fungal community structure may have far-reaching impacts on ecosystems. To understand how natural and anthropogenic stressors to freshwater systems impact fungal-mediated ecosystem processes, a greater understanding of the taxonomic and functional composition of freshwater fungal communities is needed. We assessed relationships among freshwater habitat types, water …
Improvements In Triploid Crassostrea Virginica Production: Characterizing The Diploid Parent, Brian R. Callam
Improvements In Triploid Crassostrea Virginica Production: Characterizing The Diploid Parent, Brian R. Callam
Dissertations, Theses, and Masters Projects
The effect of triploidy to effect faster growth and increased survival compared to diploid oysters is called the ‘triploid advantage’ and this advantage in the Chesapeake Bay for Crassostrea virginica is the principal reason for the value of triploid C. virginica in the Chesapeake Bay, USA. The triploid advantage is hypothesized to be the result of genetic effects, physiological changes, or a combination of both. The causative genetic mechanisms at play may include additive genetic effects and heterosis while the physiological changes obtain from triploid sterility. The triploid advantage was examined by comparing 13 diploid and 13 triploid crosses across …
Patterns Of Population Structure And Historical Dispersal In Squaloid Sharks: A Species-Level Approach Using Molecular Markers, Ana Christina Pimenta Verissimo
Patterns Of Population Structure And Historical Dispersal In Squaloid Sharks: A Species-Level Approach Using Molecular Markers, Ana Christina Pimenta Verissimo
Dissertations, Theses, and Masters Projects
Squaloids (Order Squaliformes) are a highle diverse group of mostly deepwater habitats (> 200 m). Many species are regularly caught in commercial fisheries worldwide but their low productivity and correspondingly low intrinsic rebound potentials make them particularly vulnerable to population depletion and overexploitation. of special concern to fisheries management and conservation efforts are the spiny dogfish Squalus acanthias, the leafscale gulper shark Centrophorus squamosus and the Portuguese dogfish Centroscymnus coelolepis. These taxa have recently been declared overfished in several parts of each species' distribution but management efforts have been made to recover the "stocks" without a good understanding of the …
Population Genetic Structure Of Escolar (Lepidocybium Flavobrunneum) And A Molecular Phylogeny Of The Trichiuroidea, Kirsten Brendtro
Population Genetic Structure Of Escolar (Lepidocybium Flavobrunneum) And A Molecular Phylogeny Of The Trichiuroidea, Kirsten Brendtro
Dissertations, Theses, and Masters Projects
No abstract provided.
A Genetic Analysis Of The Intraspecific Relationships Of Tropical Marine Shorefishes Common To Bermuda And The Southeastern Atlantic Coast Of The United States, Kelly R. Johnson
A Genetic Analysis Of The Intraspecific Relationships Of Tropical Marine Shorefishes Common To Bermuda And The Southeastern Atlantic Coast Of The United States, Kelly R. Johnson
Dissertations, Theses, and Masters Projects
No abstract provided.
Genetic Variation Within And Among The Suminoe Oyster (Crassostrea Ariakensis) Populations And Stocks As Assessed By Molecular Markers, Qian Zhang
Dissertations, Theses, and Masters Projects
No abstract provided.
A Genetic Investigation Of Population Structure And Phylogenetics Of The Benthic Polychaete Paraprionospio Pinnata In Chesapeake Bay, Julie Beck Stubbs
A Genetic Investigation Of Population Structure And Phylogenetics Of The Benthic Polychaete Paraprionospio Pinnata In Chesapeake Bay, Julie Beck Stubbs
Dissertations, Theses, and Masters Projects
No abstract provided.
Genetic Stock Structure Of The Sailfish, Istiophorus Platypterus, Based On Nuclear And Mitochondrial Dna, Jan Renee Mcdowell
Genetic Stock Structure Of The Sailfish, Istiophorus Platypterus, Based On Nuclear And Mitochondrial Dna, Jan Renee Mcdowell
Dissertations, Theses, and Masters Projects
The results of life history studies involving the sailfish, Istiophorus platypterus, from the Atlantic, Pacific, and Indian oceans were reviewed. Results of studies agree on several aspects of sailfish biology; sailfish exhibit opportunistic feeding behavior, follow the 28??C isotherm, spawn in summer mature at approximately age 3, and are the least migratory of the billfishes. However, results are in conflict concerning sex ratio and whether sailfish are single or multiple spawners. Although many researchers have reported that sailfish are sexually dimorphic, their fragile otoliths make them difficult to age, aging studies have not been validated, and sexual dimorphism has not …
Application Of Genetic Markers To Provide Species Identification And Define Stock Structure: Analyses Of Selected Marine Fishes Of The Mid -Atlantic Bight, Jan F. Cordes
Dissertations, Theses, and Masters Projects
Molecular markers and techniques were employed to develop a genetic key for the forensic identification of 16 species of Chesapeake Bay sportfishes and to investigate the stock structure of one of those species, the weakfish Cynoscion regalis. Regions within the ATP synthetase 6 (ATPase 6), Cytochrome b , cytochrome c oxidase I, NADH dehydrogenase 4 (ND4), and 12S/16S ribosomal RNA mitochondrial genes were amplified using the polymerase chain reaction (PCR) and digested with a bank of restriction endonucleases to find a genetic marker that exhibited complete interspecific differentiation and low intraspecific variation. Complete separation of all sixteen species was accomplished …
Comparative Evolution Of Molecular Markers: An Analysis Of Genetic Variation Within The Blue Marlin (Makaira Nigricans), Vincent Patrick Buonaccorsi
Comparative Evolution Of Molecular Markers: An Analysis Of Genetic Variation Within The Blue Marlin (Makaira Nigricans), Vincent Patrick Buonaccorsi
Dissertations, Theses, and Masters Projects
Blue marlin diversity was assessed at mtDNA, scnDNA, microsatellite DNA, and allozyme molecular markers. Hierarchical analysis of molecular variance (AMOVA) revealed that most genetic variation was maintained within populations, with a non-significant fraction attributable to variation among temporal replicates and between locations within oceans. In contrast, inter-ocean divergence was highly significant for a majority of loci within each marker class. Previous studies of mitochondrial DNA (mtDNA; n = 104) genetic variation within the blue marlin revealed two distinct clades of haplotypes, one of which was present only in the Atlantic (the 'Atlantic clade'), at a frequency of 40% &(F\sb{lcub}st{rcub}& = …
Biogeography Of Amphi-Atlantic And Amphi-American Fishes: The Scomberomorus Regalis (Scombridae), Strongylura Marina (Belonidae) And Hyporhamphus Unifasciatus (Hemiramphidae) Species Groups, Heidi M. Banford
Dissertations, Theses, and Masters Projects
Phylogenetic and historical biogeographic hypotheses were explored for three groups of teleost fishes that are hypothesized to share a common biogeographic track. Distributed across the eastern Pacific/eastern Atlantic (EP/EA) biogeographic track of Rosen (1975) are the Scomberomorus regalis (Scombridae), Strongylura marina (Belonidae) and Hyporhamphus unifasciatus (Hemiramphidae) species groups comprised of one eastern Atlantic; three, three and four western Atlantic; and two, two and four eastern Pacific species, respectively, for each group. In addition, two species in the Strongylura marina and Hyporhamphus unifasciatus groups, have invaded freshwater drainages of Central and South America. Each of the three species groups were found …
Genetic Relationships Among Geographically Isolated Populations Of Bluefish (Pomatamus Saltatrix), Catherine N. O'Neill
Genetic Relationships Among Geographically Isolated Populations Of Bluefish (Pomatamus Saltatrix), Catherine N. O'Neill
Dissertations, Theses, and Masters Projects
No abstract provided.
Global Phylogeography Of Yellowfin Tuna, Thunnus Albacares, And Mackerels Of The Genus Scomber, Daniel R. Scoles
Global Phylogeography Of Yellowfin Tuna, Thunnus Albacares, And Mackerels Of The Genus Scomber, Daniel R. Scoles
Dissertations, Theses, and Masters Projects
Intraspecific genetic relationships within yellowfin tuna, Thunnus albacares, and three mackerels of the genus Scomber were studied by restriction fragment length polymorphism (RFLP) analysis of mitochondrial DNA (mtDNA). The comparison of these scombrids, with different larval distributions, adult distributions, and vagilities, served to investigate the hypothesis that population structure in marine fishes results from geographic and physical oceanographic processes that limit dispersal of early life history stages. Samples of 20 yellowfin tuna were examined from each of five Pacific locations and one Atlantic location. MtDNA analysis with 12 informative restriction endonucleases demonstrated considerable genetic variation, as evidenced by overall nucleon …
Generic Identification And Patterns Of External Pigment In Larval Gobies (Pisces: Gobiidae) From The Belize Barrier Reef, Elizabeth D. Maddox
Generic Identification And Patterns Of External Pigment In Larval Gobies (Pisces: Gobiidae) From The Belize Barrier Reef, Elizabeth D. Maddox
Dissertations, Theses, and Masters Projects
No abstract provided.