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Genetics and Genomics Commons

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Computational Biology

Philadelphia College of Osteopathic Medicine

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Full-Text Articles in Genetics and Genomics

A Digital Atlas To Characterize The Mouse Brain Transcriptome, James P. Carson, Tao Ju, Hui-Chen Lu, Christina Thaller, Mei Xu, Sarah Pallas, Michael C. Crair, Joe Warren, Wah Chiu, Gregor Eichele Jan 2005

A Digital Atlas To Characterize The Mouse Brain Transcriptome, James P. Carson, Tao Ju, Hui-Chen Lu, Christina Thaller, Mei Xu, Sarah Pallas, Michael C. Crair, Joe Warren, Wah Chiu, Gregor Eichele

PCOM Scholarly Papers

Massive amounts of data are being generated in an effort to represent for the brain the expression of all genes at cellular resolution. Critical to exploiting this effort is the ability to place these data into a common frame of reference. Here we have developed a computational method for annotating gene expression patterns in the context of a digital atlas to facilitate custom user queries and comparisons of this type of data. This procedure has been applied to 200 genes in the postnatal mouse brain. As an illustration of utility, we identify candidate genes that may be related to Parkinson …