Forest Biology Commons^™

Ai-Driven Multispectral Drone Monitoring For Afforestation In Arid Environments, Hesham Morgan, Ali Elgendy, Brandon Tran, Tamer Ismail, Mohamed M. Moursy, Yehya Kh. Shehadeh, Ahmed Elgharib, Ahmed Abdullah Al-Dughairi, Ali El Mubarak, Khaled Allam Harhash, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Monitoring large-scale afforestation projects in arid and semi-arid environments requires accurate, high-resolution, and repeatable methods to assess tree survival and growth. In this study, we integrated unmanned aerial vehicle (UAV) multispectral imaging with an advanced object detection framework to evaluate vegetation establishment in the Shuayb Al-Budai afforestation site, part of the Imam Turki bin Abdullah Royal Natural Reserve, Kingdom of Saudi Arabia (KSA). Multispectral datasets were acquired using a MicaSense Altum-PT sensor and processed through a masked Region-based Convolutional Neural Network (RCNN) with two backbone architectures: ResNet-101 and VGG19-BN. The Mask R-CNN–ResNet-101 model achieved superior performance, with an overall accuracy …

Integrating Belowground Recovery Into Tropical Forest Restoration Design And Monitoring, Lauren Toro, Leland K. Werden, Shalom D. Addo-Danso, Kelly M. Andersen, Sarah Batterman, Matilde M. Bragadini, Pooja Choksi, Rebecca J. Cole, Liza S. Comita, Daniela Cusack, Daisy H. Dent, Lee H. Dietterich, Joshua B. Fisher, Katrin Fleischer, Lucia Fuchslueger, Nohemi Huanca-Nunez, Janey R. Lienau, Lindsay A. Mcculloch, Ember M. Morrissey, Jennifer S. Powers, Mareli Sánchez-Juliá, Oscar Valverde-Barrantes, Anita Weissflog, Michelle Y. Wong

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

There is growing recognition that tropical forest restoration is key for sequestering carbon and enhancing ecosystem resilience. Soils, roots, and soil biota are central to ecosystem function and services, but belowground recovery is largely overlooked in restoration monitoring frameworks. Here, we outline current understanding of the links between above- and belowground recovery in tropical forests by examining how belowground properties before and after intervention influence recovery; by evaluating whether aboveground recovery can serve as a proxy for belowground dynamics; and by proposing a blueprint for monitoring dynamic soil physical (bulk density, aggregate stability), chemical (organic matter or carbon, pH), and …

Catching A Fever: A Comparison Of Vachellia Xanthophloea Populations In The Limpopo And Luvuvhu River Floodplains Of The Makuleke Contractual Park, Kianie B. David

School of Natural Resources: Dissertations, Theses, and Student Research

This study investigates patterns of stand structure regeneration, growth characteristics, and coarse woody debris (CWD) patterns in Vachellia xanthophloea (fever tree) stands within the Makuleke Contractual Park (MCP), a semi-arid savanna system in northern Kruger National Park (KNP), South Africa. Fieldwork was conducted across two stand types: a monospecific fever tree stand in Rietbok Vlei and a mixed-species stand in the Western Nhlangaluwe Floodplain where fever tree is established with Faidherbia albida (ana tree). Data were collected from 20 total 1/4-acre (1,011 m²) circular plots between both stands in 2024 and 2025, including seedling root collar diameter (RCD), …

Chinese Tallow Long-Term Impact On Stand Dynamics In A Bottomland Hardwood Forest Following Vegetation Management, Nicklaus R. Langlois

Electronic Theses and Dissertations

Chinese tallow (Triadica sebifera (L.) Small) is an invasive tree known to have negative impacts on bottomland hardwood forests. Chinese tallow is proficient in reproducing and surviving in bottomland hardwood forests because it is more flood and shade tolerant than most native trees. The long-term effectiveness of Chinese tallow control is an important topic to research as only a few long-term studies of Chinese tallow control have been conducted. A 10-year re-measurement of 22 paired plots installed in 2012 on the Pineywoods Mitigation Bank near Diboll, Texas following herbicide treatments examined Chinese tallow and native tree stand structure. Each …

A Seasonal Decomposition Comparison Between Forest And Turf Habitats: Implications For Climate Change, Amanda Shirmer

DePaul Discoveries

Decomposition is an essential ecosystem service in which microorganisms breakdown organic matter. This process improves soil health and acts as a vital step in global carbon cycles. In this study, we examined decomposition rates and associated soil properties in turf and forest habitats across summer and fall seasons in order to determine how land management practices and climate change may be altering local decomposition regimes. Our study determined that there was a statistically significant difference between decomposition rates in turf and forest ecosystems (P=0.003) and a significant difference in decomposition rate across season (P

Disturbance Reduces Fungal White-Rot Litter Mat Cover In A Wet Subtropical Forest, D. Jean Lodge, Ashley E. Van Beusekom, Grizelle González, Mareli Sánchez-Julia, Sarah Stankavich

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Fungi that bind leaf litter into mats and produce white-rot via degradation of lignin and other aromatic compounds influence forest nutrient cycling and soil fertility. Extent of white-rot litter mats formed by basidiomycete fungi in Puerto Rico decreased in response to disturbances—a simulated hurricane treatment executed by canopy trimming and debris addition in 2014, a drought in 2015, a treefall, and two hurricanes 10 days apart in September 2017. Percent fungal litter mat cover ranged from 0.4% after Hurricanes Irma and Maria to a high of 53% in forest with undisturbed canopy prior to the 2017 hurricanes, with means mostly …

Marketing Agroforestry Products: Lessons From Producers

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

This publication shares producer experiences with marketing agroforestry products, including how producers entered — or created — the markets for their products. These individual stories highlight a diversity of experiences, from family-run farms to intermediaries assisting with market access. United States Department of Agriculture (USDA) and other federal, state, and local programs can provide capital or technical assistance to farmers at different phases of market development. The case studies in this publication highlight programs and resources available through USDA.

While marketing tree crops and non-timber forest products can be a challenge for producers, there is room for growth and opportunities …

Quantitative And Qualitative Approaches To Assess Tree Vigor And Stand Health In Dry Pine Forests, Nancy Grulke, Craig Bienz, Kate Hrinkevich, Jason Maxfield, Kellie Uyeda

Biology Faculty Publications and Presentations

Despite a critical need to evaluate effectiveness of forest treatments in improving stand health, practitioners lack quantitative, repeatable metrics to assess tree vigor and stand health. We evaluated canopy and whole tree attributes of ponderosa pine (Pinus ponderosa Dougl. Ex Laws) related to carbon balance, water balance, and susceptibility to insects and pathogens in dry, pine-dominated forest stands during a multi-year drought, an environmental challenge to stand resilience. Metrics of trees in two unmanaged, and seven treated forested stands, in both uplands and lowlands to develop the quantitative approach. Whole tree and crown attributes including needle length and color, branchlet …

Shifting Public Perception: Climate Change Means Living With Fire And Smoke, Robert Froembling

Seattle Journal of Technology, Environmental, & Innovation Law

The urgency to prepare for the climate crisis has never been greater. We are currently living in the sixth mass extinction and the effects are only going to accelerate. We will inherit more wildfires, larger wildfires, and more frequent wildfires.

This piece is not meant to stoke fear in its readers or be depressing, but to shift public perception on what our future holds by evaluating the laws and science presented to us. This piece will look at regional and federal regulations and assess the increased rate of forest fires and the grave public health concerns from stagnant smoke specifically …

Managing Forest Disturbances: Effects On Mule Deer And Plant Communities In Montana's Northern Forests, Teagan Ann Hayes

Graduate Student Theses, Dissertations, & Professional Papers

Mule deer (Odocoileus hemionus) are frequently the focus of population and habitat management in the western United States. Land and wildlife managers use disturbance to reset forests to earlier successional stages and improve the quality and quantity of forage available to mule deer. However, the effects of management practices on nutrition and selection vary widely, so the implementation of management practices raises ecological as well as management-related concerns. This work investigated how disturbance from wildfire, prescribed fire, and timber harvest influences the spatial and temporal distribution of nutritional resources in mule deer summer range, and therefore, how the …

Enhancing Rural Economies Through Agroforestry, Gary Bentrup, Dean Current, Christopher Hartley, Marlen Eve, Tricia Kovacs, Kate Mcfarland, Eric Norland, David Smith, Susan Stein, Richard Straight

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Executive Summary

Accelerating the adoption of agroforestry will require a better understanding of the economic opportunities and financial benefits to society, says a recent assessment of United States agroforestry.1 Providing this understanding is critical for agroforestry to reach its full potential, whereby it enhances rural economies and provides ecological services that people need, such as clean drinking water. To assess emerging opportunities, the United States Department of Agriculture (USDA) convened more than 60 people in March 2018 to learn, network, and, above all, generate ideas for raising the economic profile and viability of agroforestry in the United States.

The effort …

Agroforestry Strategic Framework, Fiscal Years 2019-2024, Susan Stein

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

America’s farmers, ranchers, and forest landowners are integrating trees with agriculture to address a variety of conservation and production goals. A unique land management approach, agroforestry provides opportunities to integrate productivity and profitability with environmental stewardship to support healthy, sustainable agriculture systems, economies, and communities.

Identifying An Optimal Bald Eagle Monitoring Program For Southwest Alaska National Parks, Rebecca Kolstrom

Electronic Theses and Dissertations

The Southwest Alaska Inventory and Monitoring Network includes bald eagle monitoring as part of their Vital Signs Monitoring Plan. Lake Clark National Park and Preserve, Katmai National Park and Preserve, Kenai Fjords National Park, and Wrangell – St. Elias National Park and Preserve monitor bald eagles annually, albeit slightly differently among parks. Since monitoring decisions involve multiple objectives and stakeholders, there was a need for a structured approach to identify an optimal monitoring program. We used a structured decision making process and an iterative, four-round Delphi Process to collect information about long-term bald eagle monitoring from experts. We collected information …

Island Invasion: The Silent Crisis In Hawaii, Sophia Janssen

Pomona Senior Theses

Keeping out invasive species may, upon first review, seem like a trivial environmental cry from ecologists and deep environmentalists; a belated wish to return to an undeveloped world where nature was pristine. However invasive species create problems that impact all of us and can have far more severe consequences than changing a stunning landscape. These problems are heightened in islands like Hawaii, where the fragile ecosystems have developed over centuries of evolution and adaptation. The introduction of a disease-carrying mosquito can put the people of Hawaii at risk to many vector-born illnesses and create an epidemic, taking human life. The …

Understory Community Assembly Following Wildfire In Boreal Forests: Shift From Stochasticity To Competitive Exclusion And Environmental Filtering, Bo Liu, Han Y. H. Chen, Jian Yang

Forestry and Natural Resources Faculty Publications

Understory vegetation accounts for the majority of plant species diversity and serves as a driver of overstory succession and nutrient cycling in boreal forest ecosystems. However, investigations of the underlying assembly processes of understory vegetation associated with stand development following a wildfire disturbance are rare, particularly in Eurasian boreal forests. In this study, we measured the phylogenetic and functional diversity and trait dispersions of understory communities and tested how these patterns changed with stand age in the Great Xing'an Mountains of Northeastern China. Contrary to our expectation, we found that understory functional traits were phylogenetically convergent. We found that random …

Does Environment Filtering Or Seed Limitation Determine Post-Fire Forest Recovery Patterns In Boreal Larch Forests?, Wen H. Cai, Zhihua Liu, Yuan Z. Yang, Jian Yang

Forestry and Natural Resources Faculty Publications

Wildfire is a primary natural disturbance in boreal forests, and post-fire vegetation recovery rate influences carbon, water, and energy exchange between the land and atmosphere in the region. Seed availability and environmental filtering are two important determinants in regulating post-fire vegetation recovery in boreal forests. Quantifying how these determinants change over time is helpful for understanding post-fire forest successional trajectory. Time series of remote sensing data offer considerable potential in monitoring the trajectory of post-fire vegetation recovery dynamics beyond current field surveys about structural attributes, which generally lack a temporal perspective across large burned areas. We used a time series …

Assessment Of The Ponderosa Woodlands In Nebraska's Wildcat Hills: Implications For Juniperus Encroachment And Management, Allie Victoria Schiltmeyer

School of Natural Resources: Dissertations, Theses, and Student Research

Ponderosa pine (Pinus ponderosa) is a dominant tree species across western North America. Its eastern distribution includes three populations in western Nebraska. This study assesses the distribution, structure and age of ponderosa pine woodlands in one of those regions, the Wildcat Hills. The Wildcat Hills have escaped severe wildfires seen in recent decades in other ponderosa pine regions. Nevertheless, the Wildcat Hills woodlands face multiple threats including climate change, wildfire, drought, pine beetles, and invasive species. Key to these threats is the stand structure of pine woodlands, which have increased in density across much of ponderosa pine’s range. …

Guide To Usda Agroforestry Research Funding Opportunities

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

This guide is intended for researchers and academics pursuing funding opportunities for research in agroforestry - the intentonal integration of trees and agriculture. The guide provides an overview of external agroforestry research funding opportunities offered by the United States Department of Agriculture (USDA) agencies.

This publication was created for serveral reasons. Agroforestry is not always clearly identified in announcements about research funding opportunities. In addition, research on agroforestry can require a longer time horizon than research on annual systems, so awareness of multiple funding sources or multi-year funding opportunities can be useful. Last, though USDA offers grants that can support …

Agroforestry Standards For Regenerative Agriculture [Review], Craig R. Elevitch, D. Niki Mazaroli, Diane Ragone

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Agroforestry is increasingly being recognized as a holistic food production system that can have numerous significant environmental, economic, and social benefits. This growing recognition is paralleled in the USA by the budding interest in regenerative agriculture and motivation to certify regenerative practices. Current efforts to develop a regenerative agriculture certification offer an opportunity to consider agroforestry’s role in furthering regenerative goals. To understand this opportunity, we first examine how agroforestry practices can advance regenerative agriculture’s five core environmental concerns: soil fertility and health, water quality, biodiversity, ecosystem health, and carbon sequestration. Next, we review a subset of certification programs, standards, …

Assessing Spatio-Temporal Patterns Of Forest Decline Across A Diverse Landscape In The Klamath Mountains Using A 28-Year Landsat Time-Series Analysis, Drew S. Bost

Cal Poly Humboldt theses and projects

Rates of tree mortality in California and the Pacific Northwest have greatly increased in recent years, driven largely by pest and pathogen outbreaks as well as the effects of hotter, warmer droughts. While there have been a multitude of regional-scale assessments of mortality and forest decline, landscape-level studies are necessary to better identify forests that are most vulnerable to decline and to anticipate future changes. This need is particularly notable in the remote and little-studied mountains of northwest California, which are renowned for their diverse, heterogeneous vegetation types. A recent observation of elevated levels of Shasta red fir (Abies …

Northwest Forest Plan The First 20 Years (1994-2013): Watershed Condition Status And Trend, Stephanie A. Miller, Sean N. Gordon, Peter Eldred, Ronald M. Beloin, Steve Wilcox, Mark Raggon, Heidi Andersen, Ariel Muldoon

Institute for Sustainable Solutions Publications and Presentations

We used two data sets to evaluate stream and upslope/riparian condition for sixth-field watersheds in each aquatic province within the Northwest Forest Plan (NWFP) area. The stream evaluation was based on stream sampling data collected from 2002 to the 2013 (214 watersheds) as part of an eight year repeating (rotating) sample design. We are currently halfway through our second rotation of stream sampling, and have repeated 110 watersheds since the second rotation began in 2009. The analysis presented in this report uses roughly half the number of watersheds as was originally intended by the sample design since re-visitation will not …

High Resolution Land Cover Of Kansas (2015; Dataset), Darci A. Paull, Jakob W. Whitson, Abbey L. Marcotte, Greg C. Liknes, Dacia M. Meneguzzo, Todd A. Kellerman

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

This data publication contains 2015 high-resolution land cover data for each of the 105 counties within Kansas. These data are a digital representation of land cover derived from 1-meter aerial imagery from the National Agriculture Imagery Program (NAIP). There is a separate file for each county. Data are intended for use in rural areas and therefore do not include land cover in cities and towns. Land cover classes (tree cover, other land cover, water, or city/town) were mapped using an object-based image analysis approach and supervised classification.

Agroforestry: Enhancing Resiliency In U. S. Agricultural Landscapes Under Changing Conditions, Gary Bentrup, Michele M. Schoeneberger, Toral Patel-Weynand

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Agroforestry, the intentional integration of trees and shrubs into crop and animal production systems, is being deployed to enhance productivity, profitability, and environmental stewardship of agricultural operations and lands across the United States. This assessment provides a science-based synthesis on the use of agroforestry for mitigation and adaptation services in the face of climatic variability and change. It provides technical input to land-use sector issues in the National Climate Assessment (NCA) and serves as a framework for including agroforestry systems in agricultural strategies to improve productivity and food security and to build resilience in these landscapes. It also provides follow-up …

Executive Summary, Agroforestry: Enhancing Resiliency In U. S. Agricultural Landscapes Under Changing Conditions, Toral Patel-Weynand, Gary Bentrup, Michele M. Schoeneberger

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Agroforestry, the intentional integration of trees and shrubs into crop and animal production systems, is being deployed to enhance productivity, profitability, and environmental stewardship of agricultural operations and lands across the United States. The full assessment at https://doi.org/10.2737/WO-GTR-96 and summarized here provides a science-based synthesis on the use of agroforestry for mitigation and adaptation services in the face of climatic variability and change. It provides technical input to land-use sector issues in the National Climate Assessment (NCA) and serves as a framework for including agroforestry systems in agricultural strategies to improve productivity and food security and to build resilience in …

Agroforestry Horizons: Experiences And Reflections: Report-Out, Steve Rasmussen

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

The USDA National Agroforestry Center (NAC) is charting a course for the next five years. As part of this process, NAC and the USDA Interagency Agroforestry Team hosted a meeting of leaders in the fields of agroforestry, agriculture, and forestry, from government, universities, and the private sector, to share experiences and insights on agroforestry opportunities and challenges. The meeting occurred on April 27th and 28th, 2016, in Washington, DC, and entailed presentations and discussions on current and potential roles of agroforestry in supporting water quality, soil health, economic diversification, food security, and pollinator/wildlife habitat. This report-out provides a summary of …

Diseases Of Trees In The Great Plains, Aaron D. Bergdahl, Alison Hill, Gerard C. Adams, Rachel A. Allison, John A. Appel, John Ball, James T. Blodgett, Kelly S. Burns, Whitney Cranshaw, Kelsey L. Dunnell, Mark L. Gleason, Mark O. Harrell, Thomas C. Harrington, Marcus B. Jackson, William R. Jacobi, Jennifer Juzwik, Megan M. Kennwlly, Les Koch, Jared M. Leboldus, Phillip A. Mason, Douglas L. Mcnew, Judith O'Mara, Hayley M. Nelson, Nicole Opbroek, Michael E. Ostry, Scott C. Redlin, Glen R. Stanosz, Laurie J. Stepanek, Ned Tisserat, Timothy C. Todd, James A. Walla, James J. Worrall, Simeon Wright

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Hosts, distribution, symptoms and signs, disease cycle, and management strategies are described for 84 hardwood and 32 conifer diseases in 56 chapters. Color illustrations are provided to aid in accurate diagnosis. A glossary of technical terms and indexes to hosts and pathogens also are included.

Scope

The purpose of this handbook is to assist users in diagnosing tree diseases and reducing their impact. Included are the most damaging diseases, along with some that are the subject of frequent inquiry although of minor importance. The diseases included were those encountered primarily on trees in conservation plantings such as windbreaks, farmstead plantings, …

Fire, Fuels, And Streams: The Effects And Effectiveness Of Riparian Treatments, Josh Mcdaniel

Joint Fire Science Program Digests

Fire is an important disturbance in riparian systems—consuming vegetation; increasing light; creating snags and debris flows; altering habitat structure; and affecting stream conditions, erosion, and hydrology. For many years, land managers have worked to keep fire out of riparian systems through the use of buffers. A number of projects funded by the Joint Fire Science Program are shedding light on the dynamics of fire in riparian systems. Recent research and field practice have shown that (1) riparian treatments can be beneficial and are not as risky as previously thought; and (2) riparian treatments need the “Goldilocks” prescribed fire—not too hot …

Morphological And Moisture Availability Controls Of The Leaf Area-To-Sapwood Area Ratio: Analysis Of Measurements On Australian Trees, Henrique Furstenau Togashi, Iain Colin Prentice, Bradley John Evans, David Ian Forrester, Paul Drake, Paul Feikema, Kim Brooksbank, Derek Eamus, Daniel Taylor

Natural Resources Research Articles

1. The leaf area-to-sapwood area ratio (LA:SA) is a key plant trait that links photosynthesis to transpiration. The pipe model theory states that the sapwood cross-sectional area of a stem or branch at any point should scale isometrically with the area of leaves distal to that point. Optimization theory further suggests that LA:SA should decrease toward drier climates. Although acclimation of LA:SA to climate has been reported within species, much less is known about the scaling of this trait with climate among species.
2. We compiled LA:SA measurements from 184 species of Australian evergreen angiosperm trees. The pipe model was …

On Underestimation Of Global Vulnerability To Tree Mortality And Forest Die-Off From Hotter Drought In The Anthropocene, Craig D. Allen, David D. Breshears, Nate G. Mcdowell

United States Geological Survey: Staff Publications

Patterns, mechanisms, projections, and consequences of tree mortality and associated broadscale forest die-off due to drought accompanied by warmer temperatures—‘‘hotter drought’’, an emerging characteristic of the Anthropocene—are the focus of rapidly expanding literature. Despite recent observational, experimental, and modeling studies suggesting increased vulnerability of trees to hotter drought and associated pests and pathogens, substantial debate remains among research, management and policy-making communities regarding future tree mortality risks. We summarize key mortalityrelevant findings, differentiating between those implying lesser versus greater levels of vulnerability. Evidence suggesting lesser vulnerability includes forest benefits of elevated [CO2] and increased water-use efficiency; observed and modeled increases …

A Win-Win On Agricultural Lands: Creating Wildlife Habitat Through Agroforestry, Gary Bentrup

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

With increasing demands from society for limited resources, agroforestry will likely be one source of solutions as people find it increasingly necessary to achieve multiple social, economic, and ecological objectives on the same plot of land. Indications are that this is a growing field, so wildlife biologists of the future may want to consider incorporating agroforestry into their career development.