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De Novo Transcriptome Assembly And Ssr Marker Development In Apricot (Prunus Armeniaca), Muhammed Ali̇ Köse, Necati̇ Çeti̇nsağ, Kahraman Gürcan
De Novo Transcriptome Assembly And Ssr Marker Development In Apricot (Prunus Armeniaca), Muhammed Ali̇ Köse, Necati̇ Çeti̇nsağ, Kahraman Gürcan
Turkish Journal of Agriculture and Forestry
Apricot (Prunus armeniaca) is an important fruit crop worldwide. We have performed a de novo transcriptome assembly for 7 apricot accessions (`Stark Early Orange' (SEO), `Hacıhaliloğlu' (HH), `Perfection', `Iğdır', `Roxana', `Esen1', and `Esen2'), which yielded a total number of transcripts ranging from 30,363 for `SEO' to 59,751 for `Iğdır'. The pool of the reads produced from 7 accessions were assembled into 85,766 transcripts, with an average of 1165.69 nt. Functional annotation (Gene Ontology- GO and Kyoto Encyclopedia of Genes and Genomes- KEGG) was performed successfully for the transcripts. Simple sequence repeats (SSRs) were searched in the transcript pool and 14,722 …