Ecology and Evolutionary Biology Commons^™

The Discovery Of A Novel Bacteria From A Large Co-Assembly Of Metagenomes, Matthew Finkelberg

Masters Theses

In the summer of 2022, a co-assembly of metagenome was created using the microbes found at Barres Woods in Harvard Forest. 14 samples were taken, and sample was split into the organic and mineral layer, which totals 28 Bulk MAGs. Within this Co-assembly, 4 different genomes were found which were designated with the phylum of FCPU426. Three of which were considered medium quality and one being assigned high quality. The novel phyla first appeared in NCBI and GTDB databases in June 2018. The name FCPU426 dates to 2010 and was named based on the 16s amplicon sequencing.

The novel phylum …

Climate Change Attitudes Of United States Family Forest Owners And Their Influence On Forest Management Practices, Logan Miller

Masters Theses

Understanding family forest owners’ (FFOs’) attitudes and behaviors towards climate change will allow for more sustainable forest management practices to be implemented, helping to combat climate change and its impacts. The goals for this research are (1) to begin measuring U.S. FFO attitudes toward climate change, (2) to determine what factors impact these attitudes, and (3) to determine how they influence the FFO’s management practices using the Responsible Environmental Behavior (REB) framework (Hines et al. 1987). Chapter 1 explores the different facets of my thesis project focusing on forests and forests’ ecosystem services, forest ownership in the United States, and …

Abundant, Distinct, And Seasonally Dynamic Bee Community In The Canopy-Aerosphere Interface Above A Temperate Forest: Associated Data, Michael J. Cunningham-Minnick, Joan Milam, Brian Kane, H. Patrick Roberts, David I. King

Data and Datasets

This dataset describes bees (Apoidea) sampled with blue vane traps at different heights within and above a temperate forest on the campus of University of Massachusetts Amherst from April through August of 2021, as well as the R-code used for data analyses. Specifically, it includes 2 files: 1) all data on individual specimens, including species identifications, occurrence dates and coordinates, and more information on encounter location and study design, and 2) All code used to generate figures and tables from the data that are included within the published manuscript.

Monitoring Mammals At Multiple Scales: Case Studies From Carnivore Communities, Kadambari Devarajan

Doctoral Dissertations

Carnivores are distributed widely and threatened by habitat loss, poaching, climate change, and disease. They are considered integral to ecosystem function through their direct and indirect interactions with species at different trophic levels. Given the importance of carnivores, it is of high conservation priority to understand the processes driving carnivore assemblages in different systems. It is thus essential to determine the abiotic and biotic drivers of carnivore community composition at different spatial scales and address the following questions: (i) What factors influence carnivore community composition and diversity? (ii) How do the factors influencing carnivore communities vary across spatial and temporal …

Interacting Effects Of Climate And Biotic Factors On Mesocarnivore Distribution And Snowshoe Hare Demography Along The Boreal-Temperate Ecotone, Alexej P. Siren

Doctoral Dissertations

The motivation of my dissertation research was to understand the influence of climate and biotic factors on range limits with a focus on winter-adapted species, including the Canada lynx (Lynx canadensis), American marten (Martes americana), and snowshoe hare (Lepus americanus). I investigated range dynamics along the boreal-temperate ecotone of the northeastern US. Through an integrative literature review, I developed a theoretical framework building from existing thinking on range limits and ecological theory. I used this theory for my second chapter to evaluate direct and indirect causes of carnivore range limits in the northeastern US, …

The Ecological Value Of Spruce Plantations In Massachusetts, Calvin Ritter

Masters Theses

The establishment of monoculture plantations of exotic tree species is common practice for supplementing native timber stocks. Such plantations typically provide inferior habitat for wildlife compared to native forest, which may result in a net reduction in biodiversity. However, some studies report that plantations may increase net biodiversity at the landscape scale by introducing novel habitats or supplementing existing natural forests. Using point count surveys, I examined six mature Norway spruce (Picea abies) plantations in western Massachusetts in 2016 and 2017 to evaluate bird use of these habitats relative to native forest stands. Count data were analyzed using …

Biology, Molecular Systematics, Population Dynamics And Control Of A Stem Gall Wasp, Zapatella Davisae (Hymenoptera: Cynipidae), Monica Davis

Doctoral Dissertations

Gall wasps are phytophagous insects that often go unnoticed, however, when they are released from their natural enemies, they have the capacity to outbreak and cause extensive foliar damage. One such outbreaking pest, Zapatella davisae, causes significant damage and mortality to black oak, Quercus velutina. In recent years, black oak decline has been documented in Long Island, New York and coastal New England. Little is known about the lifecycle, distribution or population dynamics of Zapatella davisae and the taxonomy of the species is still unclear. My first study described the biology and distribution of Z. davisae. Zapatella …

Improving Conservation Efforts Through A Better Understanding Of Forest Elephant Ecology, The Impacts Of Threats On Elephants And Freshwater Fisheries In Northern Congo, Roger Patrick Boundja

Doctoral Dissertations

IMPROVING CONSERVATION EFFORTS THROUGH A BETTER UNDERSTANDING OF FOREST ELEPHANT ECOLOGY, THE IMPACTS OF THREATS ON ELEPHANTS AND FRESHWATER FISHERIES IN NORTHERN SEPTEMBER 2016 ROGER PATRICK BOUNDJA, B.Sc. FORESTRY, MARIEN NGOUABI UNIVERSITY, BRAZZAVILLE MSc. UNIVERSITY OF CAPE TOWN PhD. UNIVERSITY OF MASSACHUSETTS AMHERST Directed by: Professor Curtice R. Griffin Catch data, including fish numbers, length-weight were collected during a multi-mesh Gillnet fisheries-independent survey in 2007-2008, and fisheries-dependent mixed gear surveys in 2009-2010 and 2015 across 400km stretch of the Sangha River located in the Sangha Tri-National. Overall, very high species richness (Chao 2 mean=250, SD=16.15) and diversity index (Simpson Inverse …

Modeling Historical And Future Range Of Variability Scenarios In The Yuba River Watershed, Tahoe National Forest, California, Maritza Mallek

Masters Theses

In California's northern Sierra Nevada mountains, the fire-dependent processes of forest ecosystems have been interrupted and altered by human land use and fire suppression. U.S. Forest Service policy directs land managers to plan for a future that includes multiple use and the restoration of resilient ecosystems. Planning decisions are to be informed by an analysis of the range of variability of ecological processes at multiple scales. Current climate trends in the northern Sierra are of increasing temperatures, increased precipitation, and earlier snowmelt, as well as changes to the frequency and duration of drought. These climate changes have and continue to …

Generating Best Management Practices For Avian Conservation In A Land-Sparing Agriculture System, And The Habitat-Specific Survival Of A Priority Migrant, Jeffrey D. Ritterson

Masters Theses

A large amount of the world’s biodiversity is located in a disproportionately small amount of area, namely the tropics. Many of these areas are experiencing rapid landscape changes, mainly in the form of deforestation for agricultural practices. Current conservation efforts are focused on agricultural areas and their ability to provide habitat. The conservation value of a novel land-sparing agroforestry system, known as Integrated Open Canopy (IOC), was recently demonstrated on the study site when applied to coffee. IOC coffee supports forest species that are uncommon or absent in shade grown coffee. I generated best management practices for IOC farms relative …

Density-Dependent Survival In The Larval Stage Of An Invasive Insect: Dispersal Vs. Predation, Adam A. Pepi

Masters Theses

1. The success of invasive species is often thought to be due to release from natural enemies. This hypothesis relies on the assumption that species are regulated by top-down forces in their native range and implies that species are likely to be regulated by bottom-up forces in the invasive range. Neither of these assumptions has been consistently supported with insects, a group which include many highly destructive invasive pest species.

2. Winter moth (Operophtera brumata) is an invasive defoliator in North America that appears to be regulated by mortality in the larval stage in its invasive range. To …

The Effect Of Thermoregulation And Roads On The Movements And Habitat Selection Of Moose In Massachusetts, David W. Wattles

Doctoral Dissertations

Massachusetts, U.S.A. is located along the southern boundary of the geographic range of moose (Alces alces) in North America. This is an atypical environment for moose, because of its extremely high levels of human development and high year-round temperatures, which are possibly at the limits of moose physiological tolerances. I investigated the role of these two factors on moose movements and habitat selection to determine how human development of the landscape and temperature influence moose occupation of this extreme environment. In addition, the response of moose to these factors provides insights into the influence of development and temperature …

Syllabus: Wildlife Habitat Management, Paige Warren

Sustainability Education Resources

This course provides an in-depth exploration of wildlife-habitat relationships, illustrated through basic field zoology and natural history, evolutionary biology, and ecological theory. We introduce you to quantitative tools used to explain ecological processes and their influence on wildlife and their environment. We will examine the dynamics and management of various habitats in New England, North America, and elsewhere through field visits and use of primary literature. We will place particular emphasis on managing wildlife habitat in an urbanizing world. By one estimate, roughly 9% of the land area of the United States is in a zone of wildland-urban interface, but …

Resin Volatiles Of Eastern Hemlock Induced By Its Non-Native Herbivores, Joshua D. Pezet

Masters Theses 1911 - February 2014

Eastern hemlock (Tsuga canadensis) is in decline because of infestation by the invasive hemlock woolly adelgid (Adelges tsugae; ‘HWA’) and, to a lesser extent, the elongate hemlock scale (Fiorinia externa; ‘EHS’). Many conifers respond to insect herbivory by inducing oleoresin-based defenses, however it is unknown whether eastern hemlock is capable of this inducible response. We conducted a plantation setting study of artificially infested saplings to determine if feeding by HWA or EHS induces changes in the tree’s volatile chemistry. The induced changes in volatiles we found were unlike the terpenoid-based defenses of related conifers. Only HWA feeding …

Prairie Warbler Nest-Site Selection, Nest Survival, And Demographic Response To Management In A Pitch Pine-Scrub Oak Barren, Michael E. Akresh

Masters Theses 1911 - February 2014

As shrubland bird populations decline, there is a critical need to understand the effects of habitat management. I studied a population of color-banded prairie warblers (Setophaga discolor) between 2008-2011 in a shifting mosaic landscape within a Massachusetts inland, pitch pine-scrub oak barren consisting of persistent, newly created, succeeding, and disturbed habitats. I present data showing that the abundance and population structure at this site appears to be a function of colonization of newly created habitat by second-year birds, which are likely excluded from mature early-successional habitat by site-faithful older birds. Breeding season fecundity did not differ significantly between …

Status, Movements, And Habitat Use Of Moose In Massachusetts, David W. Wattles

Masters Theses 1911 - February 2014

Moose (Alces alces) have been re-established in much of the historic range in the northeastern United States. Recently the southern edge of the species ranges has been extended southward into southern New England and northern New York from established populations in northern New England. The southern expansion raised questions as to the ability of this northern species to cope with higher temperatures, areas densely populated by humans, and different forest types further south. In light of these recent developments, we conducted a literature search on moose in the northeastern United States and distributed a questionnaire and conducted phone …

Evaluating The Influence Of Disturbance And Climate On Red Spruce (Picea Rubens Sarg.) Community Dynamics At Its Southern Range Margin, Relena R. Ribbons

Masters Theses 1911 - February 2014

Picea rubens(red spruce) populations experienced a synchronous rangewide decline in growth and vigor starting in the 1960’s, which was likely caused by climate change or environmental disturbances (e.g., acid deposition); However, it is yet unknown if populations continue to decline or have recovered. In the context of global warming, red spruce is a species of concern because it is at its southern continuous range margin in Massachusetts. This study uses tree-ring data coupled with population data from permanent plots to quantify the status of red spruce in Massachusetts. Tree cores were extracted from red spruce and used to examine …

Nitrogen Dioxide In The Urban Forest: Exposure And Uptake, Tanner B. Harris

Masters Theses 1911 - February 2014

Nitrogen dioxide (NO2) levels were measured inside and adjacent to canopies of urban trees in Springfield, MA, over two growing seasons. Nitrogen dioxide levels were consistently and significantly higher inside tree canopies compared to levels outside. During the second growing season, ozone (O3), temperature, and relative humidity (RH) were also measured using samplers co-located with the NO2 samplers. Ozone levels were significantly lower inside the canopy whereas temperatures were higher inside the canopy, and RH was not different between inner and outer canopy locations. The results corroborate theoretical models predicting elevated NO2 and depressed O3 levels inside tree canopies based …

Spatial Ecology, Population Structure, And Conservation Of The Wood Turtle, Glyptemys Insculpta, In Central New England, Michael T. Jones

Open Access Dissertations

Abstract (Summary) Wood turtles ( Glyptemys insculpta ) are of conservation interest rangewide. Anecdotal accounts demonstrate that some populations have been decimated since 1850, and recent studies demonstrate that declines are still underway. From 2004-2008 I investigated the ecology of wood turtles in Massachusetts and New Hampshire. I obtained between one and five years of annual home range data for 150 turtles, and evaluated population structure at 31 sites in five major watersheds. Seasonal floods displaced 7% of wood turtles annually in one watershed, and accounted for elevated mortality. Twelve wood turtles were displaced < 16.8 km, and two were displaced over a 65-foot dam. Several turtles overwintered at their displacement site and two returned successfully, indicating that floods are a mechanism of population connectivity. Several homing turtles ended up in new areas. Turtles occupied stream segments with gradient < 1%, lower than generally available. Agricultural machinery accounted for most observed mortality, followed by automobiles and mammals. Female turtles exhibit smaller home ranges in agricultural areas. Older turtles move farther from the river than do young turtles, possibly reflecting their familiarity with a former landscape. Population density ranged from 0-40.4 turtles/river-kilometer. The highest densities occur in central New Hampshire and lower densities occur in the Housatonic watershed. Population density is negatively correlated with agriculture at both riparian and watershed scales, and responds unimodally to forest cover. Wood turtle populations in western Massachusetts are declining by 6.6-11.2% annually. I estimated ages of turtles by assessing shell-wear rates from photographs. Wood turtles regularly achieve ages over 80 years, and like related species, do not exhibit clear signs of senescence. Old wood turtles are reproductively dominant, and their survival rates are twice as high as young turtles. Carapace scutes appear to require 80 years to become worn. Population modeling indicates that wood turtle populations are declining in New England due to anthropogenic and natural factors. Conservation efforts must address the effects of agriculture on adult survival. Climate change may negatively affect northeastern wood turtles through increased flooding. Populations in mountainous areas may be likely candidates for conservation because they don't occupy prime agricultural land, but may be more susceptible to floods.

Landscape Ecology Of Large Fires In Southwestern Forests, Usa, Sandra L Haire

Doctoral Dissertations 1896 - February 2014

The recent increase in large fires in southwestern forests has prompted concern regarding their ecological consequences. Recognizing the importance of spatial patterns in influencing successional processes, I asked: (1) How do large fires change plant communities?; (2) What are the implications of these changes for ponderosa pine forests?; and (3) What is the relationship of fire severity to gradients of climate, fuels, and topography? To address the first two questions, I studied succession in the woody plant community at two sites that burned in high-severity fire: La Mesa fire in northern New Mexico (1977) and Saddle Mountain in northern Arizona …

Conservation Implications Of A Marbled Salamander, Ambystoma Opacum, Metapopulation Model, Ethan B. Plunkett

Masters Theses 1911 - February 2014

Amphibians are in decline globally and a significantly greater percentage of ambystomatid salamander species are in decline relative to other species; habitat loss contributes significantly to this decline. The goals of this thesis is to better understand extinction risk in a marbled salamander (ambystoma opacum) population and how forestry effects extinction risk. To achieve this goal we first estimated an important life history parameter (Chapter 1) then used a metapopulation model to estimate population viability and determine what aspects of their life history put them most at risk (Chapter 2) and finally predicted extinction risk in response to hypothetical forestry …