Ecology and Evolutionary Biology Commons^™

Use Of Unoccupied Aerial Vehicle (Drones) Based Remote Sensing To Model Platform Topography And Identify Human-Made Earthen Barriers In Salt Marshes, Joshua J. Ward

Masters Theses

Elevation is a foundational driver of salt marsh morphology. Elevation governs inundation and hydrological patterns, vegetation distribution, and soil health. Anthropogenic impacts at grand scales (e.g., rising sea levels) and local scales (e.g., infrastructure) have altered the elevation of the salt marsh surface, changing the topography and morphology of these ecosystems. This study establishes and assesses means to document and analyze these impacts using Unoccupied Aerial Vehicle (UAV) based remote sensing to model platform topography. This thesis’s first and primary study presents and compares methods of producing high-resolution digital terrain models (DTMs) with UAV-based Digital Aerial Photogrammetry (DAP) and Light …

Hydrologic Controls On Phosphorus Speciation And Mobilization In A Subalpine Watershed (East River, Colorado), Lucia Isobel Arthen-Long

Masters Theses

The cycling of phosphorus (P) through floodplain environments is critical to ecosystem productivity and has significant implications on both water quality and soil fertility. P export from soils in response to saturation has been well documented, but the relative vulnerability of specific P pools to mobilization remains poorly constrained, as do the mechanisms mediating its release. The prediction of P availability in and export from mountainous floodplain soils is of great importance as global climate change is projected to significantly alter precipitation regimes in alpine systems. This study combined a thorough characterization of P distribution across a hillslope to floodplain …

Statistical Improvements For Ecological Learning About Spatial Processes, Gaetan L. Dupont

Masters Theses

Ecological inquiry is rooted fundamentally in understanding population abundance, both to develop theory and improve conservation outcomes. Despite this importance, estimating abundance is difficult due to the imperfect detection of individuals in a sample population. Further, accounting for space can provide more biologically realistic inference, shifting the focus from abundance to density and encouraging the exploration of spatial processes. To address these challenges, Spatial Capture-Recapture (“SCR”) has emerged as the most prominent method for estimating density reliably. The SCR model is conceptually straightforward: it combines a spatial model of detection with a point process model of the spatial distribution of …

Monitoring Mammals At Multiple Scales: Case Studies From Carnivore Communities, Kadambari Devarajan

Doctoral Dissertations

Carnivores are distributed widely and threatened by habitat loss, poaching, climate change, and disease. They are considered integral to ecosystem function through their direct and indirect interactions with species at different trophic levels. Given the importance of carnivores, it is of high conservation priority to understand the processes driving carnivore assemblages in different systems. It is thus essential to determine the abiotic and biotic drivers of carnivore community composition at different spatial scales and address the following questions: (i) What factors influence carnivore community composition and diversity? (ii) How do the factors influencing carnivore communities vary across spatial and temporal …

Data For « Does Invasion Science Encompass The Invaded Range? A Comparison Of The Geographies Of Invasion Science Versus Management In The U.S. », Lara Munro, Bridget Griffin, Brittany Laginhas, Bethany Bradley

Data and Datasets

Data collected from English-language articles published between 1999-2018 on the ten most studied invasive plants in the United States.

Mapping Sandbars In The Connecticut River Watershed Through Aerial Images For Floodplain Conservation, Bogumila Backiel

Masters Theses

Active geomorphic features of rivers like sandbars provide habitat for endangered and threatened riparian plant and animal species. However, human development has altered flow and sediment regimes, thus impairing formation of sandbars and islands. Large scale mapping of the fluvial geomorphology in river ecosystems like the Connecticut River is are necessary to understand the dynamics of these features and preserve habitat. Orthophotographs from 2012 from United States Department of Agriculture's Farm Service Agency (FSA), National Agriculture Imagery Program (NAIP) were used to develop a model in ArcGIS Pro to identify fluvial geomorphic features in the Connecticut River and 12 of …

Modelling Bird Migration With Motus Data And Bayesian State-Space Models, Justin Baldwin

Masters Theses

Bird migration is a poorly-known yet important phenomenon, as understanding movement patterns of birds can inform conservation strategies and public health policy for animal-borne diseases. Recent advances in wildlife tracking technology, in particular the Motus system, have allowed researchers to track even small flying birds and insects with radio transmitters that weigh fractions of a gram. This system relies on a community-based distributed sensor network that detects tagged animals as they move through the detection nodes on journeys that range from small local movements to intercontinental migrations. The quantity of data generated by the Motus system is unprecedented, is on …

Processing Conservation Indicators With Open Source Tools: Lessons Learned From The Digital Observatory For Protected Areas, Lucy Bastin, Andrea Mandrici, Luca Battistella, Grégoire Dubois

Free and Open Source Software for Geospatial (FOSS4G) Conference Proceedings

The European Commission has a commitment to open data and the support of open source software and standards. We present lessons learnt while populating and supporting the web and map services that underly the Joint Research Centre's Digital Observatory for Protected Areas. Challenges include: large datasets with highly complex geometries; topological inconsistencies, compounded by reprojection for equal-area calculations; multiple different representations of the same geographical entities, for example coastlines; licensing requirement to continuously update indicators to respond to monthly changes in the authoritative data. In order to compute and publish an array of indicators, we used a range of open …

Botswana’S Elephant-Back Safari Industry – Stress-Response In Working African Elephants And Analysis Of Their Post-Release Movements, Tanya Lama

Masters Theses

Understanding how African elephants (Loxodonta africana) respond to human interactions in ecotourism operations is critical to safeguarding animal and human welfare and sustaining wildlife ecotourism activities. We investigated the stress response of elephants to a variety of tourist activities over a 15-month period at Abu Camp in northern Botswana. We compared fecal glucocorticoid metabolite (FGM) concentrations across three elephant groups, including: eight elephants in an elephant-tourism operation (Abu herd), three elephants previously reintroduced back into the wild from the Abu herd, and wild elephants. There were no differences in FGM concentrations between the three groups of elephants. The highest observed …

Ecological Consequences Of Lost Anadromous Forage Fish In Freshwater Ecosystems, Steven R. Mattocks

Masters Theses

Beginning in the early 1600s, dam construction in New England obstructed anadromous fish access to spawning grounds during migration. As a result, anadromous forage fish populations have declined, which has impacted freshwater, marine, and terrestrial ecosystems. To determine the impacts of dams on anadromous forage fish and freshwater ecosystems, I used historical and current data to estimate population changes in alewives (Alosa pseudoharengus) from 1600-1900. A significant reduction in spawning habitat occurred in New England as a result of 1,642 dams constructed between 1600 and 1900, resulting in 14.8% and 16.6% lake and stream habitat remaining by 1900, …

Factors Affecting Habitat Quality For Wintering Wood Thrushes In A Coffee Growing Region In Honduras, Brett A. Bailey

Masters Theses

Amongst the diversity of taxa that occur in the Neotropics, 200 migratory bird species that breed in temperate North America can be found. Many of these populations have seen significant declines since the 1960s. The Wood Thrush, Hylocichla mustelina, is one such species. Shade coffee and other agroforestry practices show potential for benefiting migratory species, but the quality of coffee habitat and optimal habitat characteristics for Wood Thrushes remain unknown.

I surveyed a spatially complex, agricultural landscape in Honduras outside the recognized winter range of the Wood Thrush and radio-tagged 46 individuals within rustic coffee farms during the winters …

Distribution Locations Of Invasive Species (Out Of The Weeds? Reduced Plant Invasion Risk With Climate Change In The Continental United States), Bethany Bradley, Jenica Allen

Environmental Conservation Datasets

The comma-delimited data file includes the species code (see Supplemental Online Table S2 for full species names), latitude, and longitude in decimal degrees (WGS84) for the occurence points used in model fitting. Some data use agreements prohibit the publication of coordinate data and those points have been removed.

Continent-Wide Survey Reveals Massive Decline In African Savannah Elephants, Michael J. Chase, Scott Schlossberg, Curtice R. Griffin, Philippe J.C. Bouché, Sintayehu W. Djene, Paul W. Elkan, Sam Ferreira, Falk Grossman, Edward Mtarima Kohi, Kelly Landen, Patrick Omondi, Alexis Peltier, S.A. Jeanetta Selier, Robert Sutcliffe

Environmental Conservation Faculty Publication Series

African elephants (Loxodonta africana) are imperiled by poaching and habitat loss. Despite global attention to the plight of elephants, their population sizes and trends are uncertain or unknown over much of Africa. To conserve this iconic species, conservationists need timely, accurate data on elephant populations. Here, we report the results of the Great Elephant Census (GEC), the first continent-wide, standardized survey of African savannah elephants. We also provide the first quantitative model of elephant population trends across Africa. We estimated a population of 352,271 savannah elephants on study sites in 18 countries, representing approximately 93% of all savannah …

Experimental Test Of Genetic Rescue In Isolated Populations Of Brook Trout, Zachary L. Robinson

Masters Theses

Translocations are an important aspect of the management of natural populations in an increasingly fragmented landscape. Maintaining connectivity and gene flow is beneficial for both contemporary fitness and adaptive potential in the face of environmental change. Genetic rescue (GR) can alleviate inbreeding depression, genetic load, and increase adaptive potential of populations. Here, I have translocated 10 (5 of each sex) brook trout (Salvelinus fontinalis) to four geographically proximate and environmentally similar fragmented stream-dwelling populations of brook trout in Virginia to test for genetic rescue. The translocated brook trout contributed to more families than would be expected under neutral …

The Potential For Restoration Of Tan Brook, An Urban Headwater Stream In Amherst, Massachusetts, Alison Tenhulzen, Alyssa Black, Robert F. Smith

Research

The goal of the Tan Brook Student Conservation Group is to educate undergraduate students at the University of Massachusetts Amherst about freshwater sustainability. to accomplish this, the group will act to provide opportunities in original research, applied field and laboratory methods, and outreach. The initial goal for the group will be a collaborative project describing the ecological, historical, and social significance of the Tan Brook, which will result in an informative website and educational signage located at several locations in the town of Amherst and on University property where the Tan Brook enters campus. Ultimately, the group will contribute to …

Brief Analysis Of The Tan Brook Watershed In Amherst, Massachusetts, Andrew Mckenna, Robert F. Smith

Research

The Tan Brook is a small 3.91 square kilometer watershed that runs through and encompasses the highly urbanized areas of Amherst, MA. It is part of the Connecticut River basin and the Mill River sub-basin. In order to meet the high demands of the local middle and high school, and heavy runoff from high amounts of impervious cover from downtown Amherst and the University of Massachusetts, the Tan Brook has been highly culverted.

Qualitative And Comparative Analysis Of Stormwater Management In The Tan Brook Watershed, Natalia Von Hausen, Robert F. Smith

Research

The Tan Brook Watershed is both a daylighted and diverted underground stream that runs through the Town Center of Amherst and the campus of UMass Amherst. Various stormwater management practices have been used to infiltrate stormwater runoff from streets, lots, buildings and/or vehicles. These systems are custom-designed relative to the surrounding permeability of the soil, vegetation and geographical topography. Some systems have higher success rates than others.

Habitat Heterogeneity Concentrates Predators In The Seascape: Linking Intermediate-Scale Estuarine Habitat To Striped Bass Distribution, Cristina Kennedy

Masters Theses 1911 - February 2014

Predators are key components of aquatic ecosystems and innovative approaches to understanding their spatial distribution are imperative for research, effective management, and conservation. Discontinuities, created by abrupt changes between two unlike entities, are irregularly-distributed, intermediate-scale features that can have a disproportionate effect on organismal distribution within the seascape. Here I use the discontinuity concept to relate the distribution of a predator, striped bass (Morone saxatilis), to physical features within Plum Island Estuary (PIE), MA. I mapped the distribution of 50 acoustically-tagged striped bass during four monthly surveys at 40 sites to evaluate if heterogeneity in physical features concentrated …

Global Change, Global Trade, And The Next Wave Of Plant Invasions, Bethany Bradley, D. M. Blumenthal, R. Early, E. D. Grosholz, J. J. Lawler, L. P. Miller, C. J.B Sorte, C. M. D'Antonio, J. M. Diez, J. S. Dukes, I. Ibanez, J. D. Olden

Bethany Bradley

Many non-native plants in the US have become problematic invaders of native and managed ecosystems, but a new generation of invasive species may be at our doorstep. Here, we review trends in the horticultural trade and invasion patterns of previously introduced species and show that novel species introductions from emerging horticultural trade partners are likely to rapidly increase invasion risk. At the same time, climate change and water restrictions are increasing demand for new types of species adapted to warm and dry environments. This confluence of forces could expose the US to a range of new invasive species, including many …

Pollinator Populations In Massachusetts Cranberry, 1990 To 2009: Changes In Diversity And Abundance, Effects Of Agricultural Intensification, And A Contribution To The North American Pollinator Survey., Molly M. Notestine

Masters Theses 1911 - February 2014

It is now widely accepted that over one-third of the global food supply depends upon pollinators. Risking severe ecological and economic implications, the status of the 4000 species of bees native to North America has been poorly understood due to a lack of long-term survey data. In this study, I conducted bee surveys on Massachusetts cranberry (Vaccinium macrocarpon Ait.) bogs from 2007-2009 and compared diversity and abundance data to those from historical surveys performed in 1990-1992 on the same bogs. I found that overall bee diversity declined severely in the 19-year survey period, while total bee abundance remained consistent. My …

Nitrogen Dioxide In The Urban Forest: Exposure And Uptake, Tanner B. Harris

Masters Theses 1911 - February 2014

Nitrogen dioxide (NO2) levels were measured inside and adjacent to canopies of urban trees in Springfield, MA, over two growing seasons. Nitrogen dioxide levels were consistently and significantly higher inside tree canopies compared to levels outside. During the second growing season, ozone (O3), temperature, and relative humidity (RH) were also measured using samplers co-located with the NO2 samplers. Ozone levels were significantly lower inside the canopy whereas temperatures were higher inside the canopy, and RH was not different between inner and outer canopy locations. The results corroborate theoretical models predicting elevated NO2 and depressed O3 levels inside tree canopies based …

Conservation Implications Of A Marbled Salamander, Ambystoma Opacum, Metapopulation Model, Ethan B. Plunkett

Masters Theses 1911 - February 2014

Amphibians are in decline globally and a significantly greater percentage of ambystomatid salamander species are in decline relative to other species; habitat loss contributes significantly to this decline. The goals of this thesis is to better understand extinction risk in a marbled salamander (ambystoma opacum) population and how forestry effects extinction risk. To achieve this goal we first estimated an important life history parameter (Chapter 1) then used a metapopulation model to estimate population viability and determine what aspects of their life history put them most at risk (Chapter 2) and finally predicted extinction risk in response to hypothetical forestry …