Ecology and Evolutionary Biology Commons^™

Dataset For: “Shifts In Habitat, Habitat Use, And Demography Of American Lobsters In Coastal Maine Over The Past Quarter Century.”, Robert Jarrett Ii, Damian Brady, Richard Wahle, Robert Steneck

Non-Thesis Student Work

This is the dataset for the manuscript "Shifts in habitat, habitat use, and demography of American lobsters in coastal Maine over the past quarter century." Our study revisited 20 long-term monitored sites at 10 m depth along more than 320 km of the Gulf of Maine. Sampling used quadrat sampling via scuba divers. We recorded fundamental changes in lobster habitat use and distribution. The data include count, size, sex, number of claws, and shelter use of lobster in addition to substrate type, percent cover of kelp and other macroalgae. The data are included in six .csv format files: (1) data …

What Gives Me Hope, Heather M. Leslie

Maine Policy Review

The commentary focuses on the author's experiences over the last several years in Maine where she has conducted research, mentored students, and collaboratde with diverse community partners on a number of projects focused on shellfish fisheries co-management and other community-led resilience projects in coastal Maine.

Optimizing Strategies To Hydraulically Plant Atlantic Salmon Eggs Based On Fry Dispersal Patterns, Ernest J. Atkinson

Electronic Theses and Dissertations

The Gulf of Maine Distinct Population Segment of Atlantic Salmon has suffered from habitat loss and exploitation over the last century. Hatchery supplementation has prevented the extirpation of the species, but stocking methods represent tradeoffs between survival, domestication, and logistics. Egg planting, the use of eyed embryos, maximizes natural rearing opportunities which can be important for adaptation. This method, however, is logistically demanding and requires significant labor over large spatial, but short temporal, scales dictated by the ontogeny of the fish. However, the survival and dispersal behavior of Atlantic Salmon fry immediately after emergence from eggs planted in artificial nests …

I Ain't Afraid Of No Crab: Intertidal Gastropod Littorina Littorea Behavioral Response To Predation Risk By Carcinus Maenas, Isabelle Erin Smy

Honors College

Littorina littorea is an intertidal, invasive gastropod species common in the Gulf of Maine. In this paper, I studied the avoidance and risk-reducing behavioral responses of L. littorea to predation risk by invasive crustacean species Carcinus maenas. Avoidance and risk-reducing behavior in this study are defined by the tendency to move towards the edge and out of a simulated tide pool and the tendency to reduce feeding. The goal of this study was to determine whether the exposure to chemical cues of predators resulted in an increase in avoidance behavior, risk-reducing behavior, and a reduction in the time before the …

Comanagement In Maine: Integrating Fishermen’S Ecological Knowledge Into Government Oversight Of Fisheries, Anne Hayden

Maine Policy Review

Comanagement is the sharing of responsibility for management between fishermen and fisheries agencies. It shifts fishermen’s incentives to include longer term conservation goals, generates fine-scale information for management that would not otherwise be available, and develops fishing strategies that are consistent with conservation. Analysis of comanaged fisheries in Maine, for lobster, clams, river herring, and scallops, indicates that comanagement improves fisheries productivity and is more effective than standard, top-down, broad-scale fisheries management.

Why Is The Depletion Of Our Important Fish Stocks So Persistent?, James A. Wilson

Maine Policy Review

In the 1980s and 1990s, two events changed the fundamental structure of Maine's coastal ecology: inshore herring and then nearshore groundfish stocks were overfished and disappeared. Surprisingly, even without fishing, there has been no recovery. Standard fisheries management assumes that the recovery of any locally overfished place should be quick – fish from other places will 'fill in.'

In contrast, recent scientific work on social learning among animals suggests that fish have communication and learning abilities comparable to other vertebrates. Learning allows groups of fish to adapt to much more local places than possible if adaptation depended on genetics alone. …

Understanding The Impacts Of Anthropogenic Effects An Habitat Variability Interactions On Maine's Rocky Intertidal Ecosystem, Laura Braun

Electronic Theses and Dissertations

The rocky intertidal ecosystem is an important ecological and cultural aspect of the picturesque Maine coast, playing a vital role in not only Maine’s coastal ecosystem, but also to Maine’s economy. It’s distinct community structure along the sharp elevational gradient and the presence of daily stressors (wave action, heat, and desiccation), make the rocky intertidal ecosystem an important model ecosystem to monitor for effects from anthropogenic impacts. In this thesis, I describe attempts to monitor and understand the impacts of two of these anthropogenic impacts on this system: climate change and industrial harvesting of Ascophyllum nodosum along Maine’s coast. For …

Effects Of Glacial Stressors On Sperm Maturation In Colonies Of The Red Tree Coral, Primnoa Pacifica, Joshua Lynn

Honors College

The red tree coral, Primnoa pacifica, is a large, colony forming species of cold- water coral which is often an important habitat for many commercially important species of fish and crab. This keystone species is long lived and found at much shallower depths in the fjords of Glacier Bay National Park (GBNP) than elsewhere in the northern Pacific Ocean because of the phenomenon known as deep-water emergence. Due to their proximity to tidewater glaciers in GBNP, corals likely have to endure glacial stressors such as freshwater runoff and sedimentation that is not typical of populations in deeper water, which …

Primnoa Pacifica Reproduction In Shallow Versus Deep Habitats Of Glacier Bay National Park And Preserve, Alaska, Ciara N. Larence

Honors College

Primnoa pacifica is a species of deep-sea cold-water coral that can be found in Glacier Bay National Park and Preserve in Alaska. These colonies are important to their ecosystem as they provide habitat for other species living in this area. One thing that makes P. pacifica important to study is that the species displays deep-water emergence. This is a phenomenon where species normally found in deep waters can exist in shallower waters, allowing easier access for research. The purpose of this thesis was to determine if depth effects the reproduction of male P. pacifica colonies. Two colonies from deep depths …

The Impacts Of Climate Change On The Gulf Of Maine Northern Shrimp (Pandalus Borealis) Distribution, Reproduction, And Life, Hsiao-Yun Chang

Electronic Theses and Dissertations

The Gulf of Maine northern shrimp (Pandalus borealis) once supported a significant winter fishery for the Gulf of Maine (GOM). Although the shrimp fishery is not comparable to the lobster business, it provided fishermen and many coastal communities jobs and incomes in winters after lobster seasons. However, a moratorium has been put on the shrimp fishery since 2014 due to record low population abundance and perceived recruitment failures. The recruitment failures have been correlated with warming water temperatures over the past decade. The GOM has been recognized as experiencing rapid warming as a result of global climate change. …

The Impacts Of Embryonic Arsenic Exposure Of Fundulus Heteroclitus, Torey Bowser

Electronic Theses and Dissertations

Arsenic is a toxic metalloid that exceeds safe drinking water standards in groundwater in many locations worldwide. Arsenic exposure in fish has been linked to destruction of gill tissues, impairment of growth, decreased muscle mass, memory impairment, increased aggression, and avoidance behaviors. We examined the behavior of mummichogs (Fundulus heteroclitus) following arsenic exposure during development in two studies. Embryos were collected from fish from three reference sites: Scorton Creek (SC), Massachusetts, Wells Harbor (WE), Maine, and Block Island (BLOC), Rhode Island and two contaminated sites: Callahan Mine (CM), Brooksville, Maine, and New Bedford Harbor (NBH), Massachusetts. Embryos were …

Maine-Edna: Sustaining Coastal Ecosystems In Maine And Beyond, Maine Epscor

General University of Maine Publications

Maine Environmental DNA (Maine-eDNA) is a statewide, multi-institutional initiative establishing Maine as a natural leader in environmental monitoring, ecological understanding and sustainability of coastal ecosystems through research, education, and outreach.

Assessing Predator Risk To Diadromous Fish Conservation In The Penobscot River Estuary, Lauri Leach

Electronic Theses and Dissertations

Successful conservation of pinnipeds in the northwest Atlantic has led to increasing populations of harbor (Phoca vitulina) and gray seals (Halichoerus grypus) in the Gulf of Maine. Seals are often perceived as predators and competitors for fish, and as a result, come into conflict with fisheries and fish conservation. Increasing numbers of seals have become a recent concern in the Penobscot River Estuary in Maine, as habitat restoration and diadromous fish conservation have been top priorities in this region for the past decade.

To understand how pinnipeds are responding to these efforts, as well as the risks they pose to …

From Phocine Distemper To Avian Influenza: A Study Of Immunogenetic Diversity In Two Sympatric Pinniped Species, Alayna K. Gigliotti

Electronic Theses and Dissertations

Gray (Halichoerus grypus) and harbor (Phoca vitulina) seals are sympatric species that inhabit the North Atlantic and have been subject to mortality events from disease outbreaks, particularly phocine distemper and avian influenza virus. Across mortality events, gray seals tend to exhibit a higher survival rate, which could be explained by various ecological factors impacting rates or direction of selection in parts of the genome related to the immune system. These factors could include haul-out site density, habitat, and degree of inter/intraspecies interaction. This research aims to compare genetic diversity within the Major Histocompatibility Complex (MHC) class …

Distributions And Abundances Of The Red Tide Dinoflagellate Alexandrium Catenella In The Eastern Gulf Of Maine And Bay Of Fundy In Relation To Diatoms In June, July And August Of 2019, Kimberly Lina D'Adamo

Electronic Theses and Dissertations

A series of three oceanographic survey cruises were conducted in June, July, and August of 2019 in the northeastern Gulf of Maine and Bay of Fundy. Surface water samples were collected and analyzed for enumerations of cell densities of the dinoflagellate Alexandrium catenella in relation to cell densities of diatoms. Hydrographic profiles of temperature, salinity, and nutrients (silicate and nitrate) were also made at each station. Data were analyzed to determine if there was any statistically significant evidence of allelopathic interference imparted by diatoms that impede A. catenella. A. catenella cells were most abundant in June, reaching 6,195 cells per …

Sourcing And Evaluating The Use Of Detritus As A Supplementary Diet For Bivalve Aquaculture Using Stable Isotopes And Fatty Acid Biomarkers, Adrianus C. Both

Electronic Theses and Dissertations

Detritus is a ubiquitous component of ecosystems and an important fuel for secondary production. Due to the extractive nature of bivalve aquaculture, detritus is often incorporated into carrying capacity and growth models for cultured bivalves. However, despite the complexity and difficulty in obtaining direct measurements, detritus is often treated as a homogeneous food source in models. Further understanding the role detritus plays in the diet of cultured bivalves could lead to more comprehensive and accurate models as well as more informed site selection for growers. The purpose of this study was to assess the abundance, bioavailability, and contribution of detritus …

Confirmed Presence Of Parahepatospora Carcini In Carcinus Maenas Population Of Maine, Brittany Torchia

Honors College

Carcinus maenas (European green crab) is an invasive species that made its way to North American waters in the 1800s on European trading ships. As an invasive species they cause problems by competing with native species for the resources within their shared ecosystem. They can also introduce pathogens that can infect and wreak havoc on native populations. In Nova Scotia, Bojko et al. (2017) found the pathogen Parahepatospora carcini, a clade IV microsporidian parasite found in the hepatopancreas of aquatic arthropods, in C. maenas. Because this case was located within close range of Maine waters, the objective of this study …

Deep Benthic Coral Habitats Of Glacier Bay National Park And Preserve, Alaska, Elise C. Hartill

Electronic Theses and Dissertations

Glacier Bay National Park and Preserve in Southeast Alaska is a system of fjords that presents an ideal natural laboratory to study terrestrial, aquatic and marine patterns of succession due to its unique and recent history of deglaciation. The patterns of deep benthic community assemblages in the fjords of Glacier Bay were investigated by quantitative assessment of underwater photo-quadrats collected using a remotely operated vehicle. The percent cover and diversity of species were lowest near the glaciated heads of the fjords and highest in the Central Channel and at the mouths of the fjords of Glacier Bay, where oceanographic conditions …

Social-Ecological Heterogeneity Shapes Resilience Of Small-Scale Fisheries: An Interdisciplinary Analysis Of The Mexican Chocolate Clam Fishery In Loreto, Mexico, Kara E. Pellowe

Electronic Theses and Dissertations

All benefits provided by natural systems are embedded within coupled social-ecological systems (SESs). Fisheries are clear examples of SESs: through fishing, humans affect ecosystem structure and functioning, and in turn, receive benefits, including sustenance, employment, and cultural value. Resilience, the ability to maintain structure and function in the face of change, is key to sustaining the social and ecological components of fisheries-related SESs and their interactions. Many factors contribute to resilience, including heterogeneity. By identifying heterogeneity in these complex systems, we are better able to understand the capacity of fishery-related SESs to adapt to change, and contribute to management that …

Response Of Early Life Stage Homarus Americanus To Ocean Warming And Acidification: An Interpopulation Comparison, Maura K. Niemisto

Electronic Theses and Dissertations

Anthropogenic carbon released into the atmosphere is driving rapid, concurrent increases in temperature and acidity across the world’s oceans, most prominently in northern latitudes. The geographic range of the iconic American lobster (Homarus americanus) spans a steep thermal gradient and one of the most rapidly warming oceanic environments. Understanding the interactive effects of ocean warming and acidification on this species’ most vulnerable early life stages is important to predict its response to climate change on a stage-specific and population level. This study compares the responses of lobster larvae from two sub-populations spanning New England’s north-south temperature gradient (southern …

Spatio-Temporal Dynamics Of Atlantic Cod Bycatch In The Maine Lobster Fishery And Its Impacts On Stock Assessment, Robert E. Boenish

Electronic Theses and Dissertations

Of the most iconic fish species in the world, the Atlantic cod (Gadus morhua, hereafter, cod) has been a mainstay in the North Atlantic for centuries. While many global fish stocks have received increased pressure with the advent of new, more efficient fishing technology in the mid-20^th century, exceptional pressure has been placed on this prized gadoid. Bycatch, or the unintended catch of organisms, is one of the biggest global fisheries issues. Directly resulting from the failed recovery of cod in the GoM, attention has been placed as to possible sources of unaccounted catch. Among the most …

Polyp To Population: A Tale Of Two Corals, Christopher T. Fountain

Electronic Theses and Dissertations

Deep-sea corals are of conservation concern in the North Atlantic due to prolonged disturbances associated with the exploitation of natural resources and a changing environment. As a result, the recovery rates of deep-sea coral communities are of heightened interest. These recovery rates are suggested to be on the order of decades to millennia, based on slow growth rates and longevity, of various deep-sea coral species. In 2014 and 2017 two research cruises in the Gulf of Maine, collected samples of two locally dominant species, Primnoa resedaeformis and Paramuricea placomus. These specimen collections were coupled with video surveys, conducted by …

Detrital Protein Contributes To Oyster Nutrition And Growth In The Damariscotta Estuary, Maine, Usa, Cheyenne M. Adams

Electronic Theses and Dissertations

Oyster aquaculture is an expanding industry that relies on identifying and utilizing natural estuarine conditions for the economically viable production of a filter-feeding crop. The eastern oyster, Crassostrea virginica, is the principal species currently cultured in Maine. In addition to preferentially consumed phytoplankton, various detrital complexes (non-algal and/or non-living organic matter) may provide some nutrition to C. virginica between times of phytoplankton abundance. Here I investigated the importance of detrital proteins in supporting the growth of oysters cultured in the upper Damariscotta Estuary. Oyster aquaculture in this area is highly successful and previous reports indicate that labile detrital protein …

Lobster In A Changing Gulf Of Maine: Investigating The Temporal Impact On Molting And The Fishing Fleet, Kevin W. Staples

Electronic Theses and Dissertations

We investigated the phenological and fisheries dynamics surrounding the spring molt of American lobster (Homarus americanus, Milne Edwards 1847) in the Gulf of Maine. We created a time series from Maine Department of Marine Resources Lobster Sea Sampling data using logistic models to estimate the timing and duration of the spring molt for eastern, central, and western regions of the Maine coast. These estimates revealed substantial inter-annual variability in the timing of the spring molt for all regions and that 2012 was indeed anomalously early relative to other years. Each region experienced significantly different molt timing for any given …

Population Ecology Of Colonially Breeding Seabirds: How Intrinsic Processes, Mediating Influences, And Individual Heterogeneity Affect Population Vital Rates, Aly Mcknight

Electronic Theses and Dissertations

Seabirds have great potential to serve as marine indicators. However, before we can interpret seabird trends with confidence, we need a better understanding of the role of intrinsic processes, mediating influences, and lifetime experience in modulating relationships between prey availability and seabird population dynamics.

Intrinsic processes, mediating influences, and seabird productivity. I assessed productivity (chicks per breeding attempt) at Black-legged Kittiwake (Rissa tridactyla) colonies in Prince William Sound, AK and managed Common Tern (Sterna hirundo) colonies in the Gulf of Maine. Both systems showed evidence of intrinsic control; factors mediating access to prey were also important.

Mediating influences, individual heterogeneity, …

Measuring Fertilization In Populations Of Sea Scallop (Placopecten Magellanicus): Developing And Testing Methods In The Laboratory And Field, Skylar Bayer

Electronic Theses and Dissertations

Most marine organisms are broadcast spawners, releasing their sperm and eggs into the water column. Methods of measuring in situ fertilization have proven successful with a few model species, which are reviewed in my introductory chapter. However, many commercially exploited species, such as the sea scallop Placopecten magellanicus, have been neglected. Sea scallop populations have greatly increased from fishing closures, but the mechanism behind this response is uncertain, particularly in regard to fertilization. In this dissertation I developed a methodology of measuring fertilization success and spawning events of P. magellanicus, tested it in laboratory and field settings, and …

Best Practices For Healthy Beaches And Watersheds In Maine: Potential Bioremediation Strategies For Improving Water Quality, Elyse Defranco

Maine Sea Grant Publications

Maine’s watersheds face many challenges from human inputs, with pollution threatening the health of our beaches, rivers, and aquaculture operations. Maine’s rural communities often lack the resources to update aging sewer infrastructure or to adequately maintain septic systems, and these sources of pollution impact watershed health. In addition to addressing sources of pollution, which can be difficult to ascertain and challenging to address when located, bioremediation practices have the potential to aid in clean-up efforts. New technological advances and research discoveries in creative forms of bioremediation are being developed and are producing promising case studies around the world. These new …

The Forgotten Cousin In Freshwater Community Ecology: Tidal Freshwater Wetlands, Jack R. Mclachlan

Electronic Theses and Dissertations

Tidal freshwaters are unique in their placement in the landscape, forming where freshwater riverine flows are sufficient to overwhelm the saline water of the incoming tide, but not strong enough to suppress tidal water-height fluctuations. Tidal freshwaters and their wetlands have been overlooked by freshwater and marine researchers alike; neither discipline considers tidal freshwaters to fall under their purview. Invertebrate communities in tidal freshwaters are thought to be species depauperate; the consensus is that they support fewer taxa than nearby non-tidal freshwaters, but little is known about how these communities are structured. This study investigated how tidal hydrology, an atypical …

Penobscot River Restoration, Catherine Schmitt

Maine Sea Grant Publications

BETWEEN THE HEAD of tide above Bangor to where it widens into the bay at Searsport, the Penobscot River shifts from a flowing freshwater waterway banked by cedar and pine to a brackish, wave-lapped marsh with a rocky shoreline. In this estuary, salt concentrations fluctuate as the winds and tides push sea water and sediments back and forth. The estuary and the river that feeds it have taken on a new character recently, and have become an international example of watershed restoration. Despite two centuries of intensive timber harvesting and pulp and paper manufacturing, and the construction of hundreds of …

Assessment Of A Hatchery Based Rainbow Smelt Supplementation Effort, Andrew O'Malley

Electronic Theses and Dissertations

Rainbow Smelt (Osmerus mordax) are an important fish distributed throughout northeastern North America with both anadromous and landlocked populations. Abundance, size at age, and maximum size vary widely among populations and life histories. In order to compare anadromous and landlocked populations, we collected spawning adults in 2014 from four anadromous and three landlocked populations. Scales and otoliths from the anadromous fish were examined and compared for estimates of bias and precision in ageing. Analysis of both scales and otoliths provided age estimates that were acceptable, but estimates from scales were more precise and had less bias. Otoliths were …