Ecology and Evolutionary Biology Commons^™

Optimizing Strategies To Hydraulically Plant Atlantic Salmon Eggs Based On Fry Dispersal Patterns, Ernest J. Atkinson

Electronic Theses and Dissertations

The Gulf of Maine Distinct Population Segment of Atlantic Salmon has suffered from habitat loss and exploitation over the last century. Hatchery supplementation has prevented the extirpation of the species, but stocking methods represent tradeoffs between survival, domestication, and logistics. Egg planting, the use of eyed embryos, maximizes natural rearing opportunities which can be important for adaptation. This method, however, is logistically demanding and requires significant labor over large spatial, but short temporal, scales dictated by the ontogeny of the fish. However, the survival and dispersal behavior of Atlantic Salmon fry immediately after emergence from eggs planted in artificial nests …

Factors Influencing Mortality Of Stocked Rainbow Trout In Black Hills Reservoirs, Charles A. Mordhorst

Electronic Theses and Dissertations

Because return to angler is an important outcome of put-and-take fisheries, understanding mortality of stocked Rainbow Trout is fundamental to managing these fisheries. Harvest rates of stocked Rainbow Trout Oncorhynchus mykiss in the Black Hills of South Dakota are believed to be below management objectives. Rainbow Trout not harvested by anglers are assumed to be lost to various sources of mortality, raising concerns about the cost of the Rainbow Trout stocking program relative to the benefit provided to anglers. (Simpson 2008). This study evaluated the factors influencing mortality of Rainbow Trout stocked into Black Hills reservoirs. We assessed the effects …

Living In A Gradient: The Influence Of Water Temperature Variation On Development, Settling Time And Survival Of Pallid Sturgeon Larvae In The Missouri River, Maria Elizabeth Erceg

Electronic Theses and Dissertations

Pallid Sturgeon (Scaphirhynchus albus) are a federally endangered species experiencing widespread reproduction and recruitment failures. Recruitment failure is hypothesized to be caused by habitat modifications made to the Missouri River that disrupt connectivity and alter temperature profiles downstream of constructed dams. Hypolimnetic releases from Missouri River dams affect the temperature downstream, creating colder conditions during the downstream drifting phase for dispersing larvae. Understanding the influence of water temperature changes on larval development is crucial for recovery efforts. In this study, we evaluated the effects of water temperature daily heating rate on energy use, settling behavior, and growth rate of endogenously …

The Impacts Of Climate Change On The Gulf Of Maine Northern Shrimp (Pandalus Borealis) Distribution, Reproduction, And Life, Hsiao-Yun Chang

Electronic Theses and Dissertations

The Gulf of Maine northern shrimp (Pandalus borealis) once supported a significant winter fishery for the Gulf of Maine (GOM). Although the shrimp fishery is not comparable to the lobster business, it provided fishermen and many coastal communities jobs and incomes in winters after lobster seasons. However, a moratorium has been put on the shrimp fishery since 2014 due to record low population abundance and perceived recruitment failures. The recruitment failures have been correlated with warming water temperatures over the past decade. The GOM has been recognized as experiencing rapid warming as a result of global climate change. …

Effects Of Harvest Regulations And Post-Release Hooking Mortality On Walleye Populations In South Dakota, Cade Lyon

Electronic Theses and Dissertations

Harvest regulations are commonly implemented to manipulate fisheries stocks. By regulating the size and number of fish that are harvested by anglers, managers are able to meet the goals and needs of regions. However, these management actions come with the potential for negative consequences. Overexploitation due to less restrictive harvest regulations can cause collapses in fisheries populations. In addition, indirect consequences such as hooking mortality brought on by length-based regulations can also be detrimental to populations. In this study, I investigated the effects of various harvest regulations on Walleye populations in three western South Dakota irrigation reservoirs: Angostura, Belle Fourche, …

Assessing Habitat Suitability Of Ribbed Mussels (Geukensia Demissa) In Georgia Salt Marshes By Examining Predicted Mussel Densities And Mussel Population Parameters, William K. Annis Jr

Electronic Theses and Dissertations

Geukensia demissa (ribbed mussel) is an ecology important bivalve that has the potential to contribute to salt marsh restoration. Understanding the factors that contribute to the distribution of mussels can help inform managers on choosing locations to optimize the survivorship of mussels in restoration projects. This study sought to model mussel densities across the coast of Georgia and to compare predicted mussel densities with mussel population parameters as means to gauge habitat suitability. Mussel densities were collected through field surveys across a range of salt marshes along the coast of Georgia and were compared with spatial data such as distance …

Movement And Survival Of Atlantic Salmon Smolts In The Penobscot River, Maine, Alejandro Molina Moctezuma

Electronic Theses and Dissertations

The Penobscot River system hosts the largest population of endangered Atlantic salmon Salmo salar in the United States. However, total adult returns in this river remain low. Historically low numbers led to listing of the distinct population segment (DPS) in 2000, and the Penobscot River population was included in the DPS in 2009. Reducing mortality in all life stages is crucial for the recovery of Atlantic salmon populations. One of the life stages associated to high mortality is the juvenile stage (smolts), in which individuals migrate downstream towards the estuary. During this migration smolts face a series of new conditions …

Influence Of Mink Predation On Brown Trout Survival And Size-Structure In Rapid Creek, South Dakota, Austin Galinat

Electronic Theses and Dissertations

I compared movement, home range, habitat selection, and mortality among radio-tagged Brown Trout (Salmo trutta) at an American Mink (Neovison vison)-removal site, improved habitat site, and an undisturbed stream site in Rapid Creek, South Dakota. I observed high, post-surgery (> 26 days) survival rate (90%) of radio tagged Brown Trout. Average gross movement of Brown Trout was greater at the improved habitat site (127 m) compared to the mink removal (31 m) site, while average home range size (i.e., stream distance) among all three sites was not significantly different indicating strong site fidelity (125 to 200 m). Brown Trout movements …

Distribution, Density, Movement, And Support For Management Of Mountain Sucker, Pantosteus Jordani, In The Black Hills Of South Dakota, Seth J. Fopma

Electronic Theses and Dissertations

Mountain Sucker, Pantosteus jordani, is a cold-water species native to the Intermountain West. Fringe populations of Mountain Sucker have experienced declines in recent decades. The population of Mountain Sucker found in the Black Hills of South Dakota represents the eastern fringe of the species’ native range. Recognized as both an indicator of biologic health and as a species of greatest conservation need in South Dakota, recent studies have suggested significant declines in both distribution and abundance. Despite the recent study of Mountain Sucker in the region, increased understanding of Mountain Sucker ecology is needed to effectively manage for the conservation …

Fish Passage And Hydropower: Investigating Resource Agency Decision-Making During The Ferc Hydropower Relicensing Process, Sarah Vogel

Electronic Theses and Dissertations

Hydropower dams represent a significant challenge for the successful migration of sea-run fish, many species of which are in decline. Most hydropower dams in the United States are regulated by the Federal Energy Regulatory Commission (FERC), an independent federal agency responsible for granting 30 to 50-year licenses to projects for their continued operation. Licenses typically include conditions for the conservation of sea-run fish such as fish passage construction, operational changes, monitoring of effectiveness, and other mitigative conditions. While FERC remains the primary authority in licensing, the current regulatory framework stipulates input from other federal and state resource and regulatory agencies, …

Assessing Migrations And Habitat Connectivity For Two Anadromous Species Following A Major Restoration Effort In The Penobscot River, Maine, George A. Maynard

Electronic Theses and Dissertations

The construction of industrial dams across major rivers in New England began in the early 1800s with textile mills in Massachusetts. Because of its legacy of mill dams and log driving dams, New England has the highest density of dams anywhere in North America, averaging one dam for every 44 km² of drainage area. By the early 1900s, these dams drastically limited migrations by diadromous fishes, resulting in declines in populations of migratory fishes, including Atlantic salmon Salmo salar and American shad Alosa sapidissima. Since that time, different fishway designs and river management plans have been tried around …

Effects Of Temperature On Microbial Parameters Associated With Decaying Plant Litter In A Stream Microcosm Experiment, Hunter David Pates

Electronic Theses and Dissertations

Increases in mean surface air temperature under climate-change predictions are expected to affect microbial activity, as well as carbon dynamics in aquatic ecosystems. I explored responses of litter-associated decomposers along temperature ranges typical of temperate streams in laboratory microcosms simulating stream conditions. The objectives of this study were to determine (1) whether the effects of temperature on stream leaf-associated microorganisms can be explained by the Metabolic Theory of Ecology (MTE); (2) if the effects of temperature are the same across temperatures commonly found in temperate streams; and (3) if there are differences in the magnitude of responses to temperature among …

Effect Of Water Velocity And Temperature On Energy Use, Behavior, And Mortality Of Pallid Sturgeon Scaphirhynchus Albus Larvae, Joseph Thomas Mrnak

Electronic Theses and Dissertations

Pallid Sturgeon Scaphirhynchus albus are a federally endangered species endemic to the Missouri River basin. Natural reproduction has been limited for decades and a recruitment bottleneck is hypothesized to occur during the larval stage of development. Understanding factors that affect survival of Pallid Sturgeon larvae is key given their critical status and ongoing recovery efforts. In this study, I evaluated the effects of water velocity and temperature on energy use, behavior, and mortality of endogenously feeding Pallid Sturgeon larvae (< 25 mm TL). In the first experiment, I examined the effect of water velocity (0 – 8.3 cm s⁻¹) on larval growth, energy density, swimming activity, and mortality. Larval growth rate at 16.3 °C was similar across …

Spatio-Temporal Dynamics Of Atlantic Cod Bycatch In The Maine Lobster Fishery And Its Impacts On Stock Assessment, Robert E. Boenish

Electronic Theses and Dissertations

Of the most iconic fish species in the world, the Atlantic cod (Gadus morhua, hereafter, cod) has been a mainstay in the North Atlantic for centuries. While many global fish stocks have received increased pressure with the advent of new, more efficient fishing technology in the mid-20^th century, exceptional pressure has been placed on this prized gadoid. Bycatch, or the unintended catch of organisms, is one of the biggest global fisheries issues. Directly resulting from the failed recovery of cod in the GoM, attention has been placed as to possible sources of unaccounted catch. Among the most …

Social Conflict On The Seas: Links Between Overfishing-Induced Marine Fish Stock Declines And Forced Labor Slavery, Jessica L. Sparks

Electronic Theses and Dissertations

Despite media attention detailing labor abuses in fisheries, social-ecological systems research has largely failed to consider whether fish stock declines could be contributing to increases in forced labor slavery. Empirical fisheries data suggests, though not a ubiquitous response to declining stocks, many vessels will fish longer, farther from shore, and deeper in waters to maintain yields. This effort intensification increases production costs, and Brashares et al. (2014), consistent with slavery theory, posited cheap and/or unpaid labor as an approach to offset increasing costs and continue harvesting fish species at a rate otherwise cost-prohibitive.

Using fuzzy cognitive mapping - a participatory, …

Predictors Of Fish Assemblage Structure And Dynamics In Atlantic Coastal Plain Streams, Rebecca Scott

Electronic Theses and Dissertations

Effective management of freshwater fishes requires a mechanistic understanding of the drivers of assemblage composition; in other words, what determines who is where and when. Stream fish assemblages are potentially influenced by environmental factors that act on multiple spatiotemporal scales, but the relative influence of these drivers may vary between geophysically distinct regions. This study sought to determine the patterns and drivers of fish taxonomic and functional assemblage composition in the coastal plain, a region possessing unique hydrologies, faunas, and physiochemical conditions. I addressed this goal using two complementary chapters, both of which utilized environmental and biotic data collected from …

Sea Lamprey (Petromyzon Marinus) As A Functional Link Between Marine And Freshwater Ecosystems, Daniel M. Weaver

Electronic Theses and Dissertations

Anadromous sea lamprey Petromyzon marinus are native to Atlantic coastal systems and serve as a functional link between marine and freshwater ecosystems. Sea lamprey spend 1–2 years in the ocean parasitizing marine vertebrates before migrating into freshwaters during the spring to spawn. There they construct nests, spawn, then die shortly afterwards. Larvae hatch, bury into fine sediments and reside in streams for generally 6–8 years, but up to 14. Larvae then undergo metamorphosis, a non-feeding period characterized by a series of physical and physiological changes. The juveniles (macropthalmia) then migrate to the ocean to begin the parasitic juvenile phase.

Historically, …

Measuring Fertilization In Populations Of Sea Scallop (Placopecten Magellanicus): Developing And Testing Methods In The Laboratory And Field, Skylar Bayer

Electronic Theses and Dissertations

Most marine organisms are broadcast spawners, releasing their sperm and eggs into the water column. Methods of measuring in situ fertilization have proven successful with a few model species, which are reviewed in my introductory chapter. However, many commercially exploited species, such as the sea scallop Placopecten magellanicus, have been neglected. Sea scallop populations have greatly increased from fishing closures, but the mechanism behind this response is uncertain, particularly in regard to fertilization. In this dissertation I developed a methodology of measuring fertilization success and spawning events of P. magellanicus, tested it in laboratory and field settings, and …

Invertebrate Prey Selectivity Of Channel Catfish (Ictalurus Punctatus) In Western South Dakota Prairie Streams, Erin D. Peterson

Electronic Theses and Dissertations

Benthic invertebrates are an important resource for aquatic consumers and should be considered in management of sportfish populations as a factor influencing fishery health. Our study seeks to draw a relationship between invertebrate prey availability and the Channel Catfish Ictalurus punctatus fishery of western South Dakota through diet analysis, but invertebrate surveys in the area have not focused on invertebrates as a prey source. Our objectives were to characterize patterns in availability of the invertebrate prey base in five major river basins, and to evaluate the effects of availability on Channel Catfish prey selectivity and condition. Invertebrates were collected at …

Development And Application Of A Fish-Based Index Of Biotic Integrity For Lakes In Eastern South Dakota, Daniel T. Nelson

Electronic Theses and Dissertations

The Index of Biotic Integrity (IBI) was developed to summarize the impact of watershed and water quality degradation to biotic communities and help to provide a more complete picture of water quality changes that are not captured in traditional physical and chemical measurements. In 2014, nearly 15% of South Dakota lakes did not meet their designated beneficial uses based on water quality measures but the impacts to the fish communities are unknown. The goal of this study was to develop a fish-based IBI for eastern South Dakota lakes by addressing three specific objectives:
1) Determine whether an IBI could be …

An Evaluation Of Nitrogen Supplementation And Processed Soy Fractions On The Performance Of Cultured Fishes, Brandon M. White

Electronic Theses and Dissertations

World population growth has resulted in an increased demand for a sustainable food supply. This rapid growth coupled with an increased per capita consumption of seafood, has resulted in many of the world’s marine fisheries being over-exploited in an effort to meet the global demand for seafood. Aquaculture has attempted to fill the supply and demand gap created by the dwindling supply of fish in the world’s oceans. Fishmeal (FM) has traditionally been the primary protein ingredient in aquafeeds fed to farm-raised fish, however its unstable supply and increasing price have driven researchers to identify alternative protein sources. Soybean meal …

Effects Of A Large-Scale Habitat Enhancement Project On Largemouth Bass Behavior, Feeding, And Growth In Grand Lake, Texas, Chance Kirkeeng

Electronic Theses and Dissertations

The quality of habitat, or the environment suitable for an organism to survive and reproduce, is often described by the type of features present and the quantity and condition of such features. Habitats in many ecosystems are declining and the loss of important habitats likely affects the success of organisms reliant upon those features. Habitats in reservoir ecosystems are especially at risk because of aging processes that are degrading reservoir habitats at faster rates than habitats in other ecosystems. Habitat enhancement projects are one tool used to combat the effects of aging reservoirs but the benefits of these management actions …

Understanding The Impact Of Commercial Harvest On White Suckers (Catostomus Commersonii) In Maine, Megan A. Begley

Electronic Theses and Dissertations

The State of Maine issues an unlimited number of commercial permits for the harvest of White Suckers Catostomus commersonii in Maine’s inland waters. The fishery provides a necessary source of fresh lobster Homarus americanus bait to coastal communities at a time when other bait sources are scarce. The impacts of the increasing number of permits and subsequent numbers of fishermen on the white sucker population is unknown. The Maine Department on Inland Fisheries and Wildlife (MDIFW) has closed a number of waters due to concerns that overfishing and incidental catch of other fish species may occur.

In Chapter 1, we …

Assessment Of A Hatchery Based Rainbow Smelt Supplementation Effort, Andrew O'Malley

Electronic Theses and Dissertations

Rainbow Smelt (Osmerus mordax) are an important fish distributed throughout northeastern North America with both anadromous and landlocked populations. Abundance, size at age, and maximum size vary widely among populations and life histories. In order to compare anadromous and landlocked populations, we collected spawning adults in 2014 from four anadromous and three landlocked populations. Scales and otoliths from the anadromous fish were examined and compared for estimates of bias and precision in ageing. Analysis of both scales and otoliths provided age estimates that were acceptable, but estimates from scales were more precise and had less bias. Otoliths were …

Assessing Freshwater Mussels (Bivalvia: Unionidae) In South Dakota And Identifying Drivers Of Assemblage Variation, Kaylee L. Faltys

Electronic Theses and Dissertations

Native freshwater mussels (Family: Unionidae) are among the most threatened groups of freshwater fauna on Earth. Approximately 35 species have gone extinct since the 1900s and 72% of remaining species are considered endangered, threatened, or species of special concern. Unionid research can begin by establishing species presence and distributions via surveys. Objectives for this study were to 1) implement the first comprehensive unionid survey for South Dakota to assess distribution, composition, and decline, 2) estimate assemblage density and determine local versus broad scale habitat drivers of assemblage variation, and 3) determine areas of unionid conservation priority in South Dakota. Mussels …

Characterizing Fish Assemblage Structure In The Penobscot River Prior To Dam Removal, Ian Andrew Kiraly

Electronic Theses and Dissertations

The Penobscot River drains the largest watershed in Maine, and once provided spawning and rearing habitats to at least 11 species of diadromous fish. The construction of dams blocked migrations of these fish and likely changed the structure and function of fish assemblages throughout the river. Further alteration to fish assemblage structure likely occurred as a result of habitat fragmentation and alteration. The proposed removal of two main-stem dams, improved upstream fish passage at a third dam, and construction of a fish bypass on dam obstructing a major tributary is anticipated to increase passage of diadromous and resident fishes. To …

Interannual Variability In American Lobster Settlement: Correlations With Sea Surface Temperature, Wind Stress And River Discharge, Mahima Jaini

Electronic Theses and Dissertations

Recruitment to benthic marine populations is fundamentally a biophysical problem. The American Lobster Settlement Index is an annual diver-based survey of the young-of-year American lobsters (Homarus americanus) found in inshore nurseries in New England, USA and Atlantic Canada at the end of the postlarval settlement season. The considerable interannual variability in the settlement index suggests that environmental factors play an important role in regulating planktonic larval supply and transport. In this study, I focused on the longest settlement time series from three oceanographically contrasting regions: Midcoast Maine, coastal Rhode Island and the lower Bay of Fundy. Sampling in these regions …

An Investigation Of The Cumulative Impacts Of Shrimp Trawling On Mud Bottom Fishing Grounds In The Gulf Of Maine: Effects On Habitat And Macrofaunal Community Structure, Anne W. Simpson

Electronic Theses and Dissertations

Despite the widespread occurrence of trawl fisheries on mud-bottoms, there is limited knowledge concerning the effects of trawling induced disturbance on these habitats and their resident macrofaunal communities. I investigated the cumulative impacts of seasonal commercial shrimp trawling on infaunal habitat and macrofaunal community structure on two mud-bottom fishing grounds in the Gulf of Maine from June 2000 - December 2001. One fishing ground located near the Outer Pumpkin Ledges (Pumpkin) experienced trawling activity during the 2000-2001 fishing season. In contrast, the other fishing ground near Monhegan Island was not trawled during the same period because shrimp abundances were low. …

Resilience Of Green Sea Urchin (Strongylocentrotus Droebachiensis) Populations Following Fishing Mortality: Marine Protected Areas, Alternate Stable States, And Larval Ecology, John Vavrinec Iii

Electronic Theses and Dissertations

The green sea urchin Strongylocentrotus droebachiensis has been aggressively fished in Maine since 1986 resulting in severe population declines throughout portions of the state. This research used Marine Protected Areas (MPAs) to evaluate the potential for recovery in depleted sea urchin populations. It was necessary to not only look at the direct impacts of the MPAs, but also at larval transport / supply and community interactions to gain a better understanding of the system. We found that MPAs in the Gulf of ~a!ne were of varied utility to restoring depleted sea urchin populations depending on location and community structure. MPAs …

Modeling The Role Of No-Take Marine Reserves In Fisheries Management, Deidre F. Gilbert

Electronic Theses and Dissertations

In recent years there has been increasing interest in the potential of no-take marine reserves to benefit fisheries management. Scientific reviews have shown that reserves often lead to substantial increases in the density, biomass, size and diversity of marine fishes inside their boundaries. However, little empirical work has been done to determine the effect of reserves on the fisheries outside their boundaries, such as potential changes in yield, size of fleet, or variability in catch. In order to explore the interaction between the biological growth and dispersion processes of the harvested stock and the changing economic incentives of harvesters created …