Biology Commons^™

A Critical Analysis Of Bumblefoot: Care And Preventative Measures In Captive Penguins, Jamie A. Wolanin

Honors Projects

Bumblefoot is a progressive and sometimes deadly infection that afflicts penguins living in human care. The most prominent cause of the disease is the extended amount of time that captive penguins spend standing in comparison to their pelagic and wild counterparts. For years, facilities have treated bumblefoot with surgery and antibiotics. However, this approach is palliative rather than preventative and has become problematic as bacteria develop stronger resistance to antibiotics. To address the behavioral abnormalities underlying the onset of bumblefoot, zoos and aquariums should utilize environmental enrichment. Many forms of environmental enrichment, including the relationship penguins have with their keepers …

Long-Term Monitoring Of A Successful Recovery Program Of Peregrine Falcons In Virginia, B. D. Watts, Mitchell A. Byrd, E. K. Mojica, S. Padgett, S. R. Harding, C. A. Koppie

Arts & Sciences Articles

The Peregrine Falcon (Falco peregrinus anatum) was believed to be extirpated as a breeding species in Virginia by the early 1960s. An aggressive restoration program was initiated in 1978 that involved the release of captive-reared birds totaling 115 on the Coastal Plain (1978–1985) and 127 in the Mountain physiographic region (1985–1993). The first occupied territory was established and the first breeding attempt was documented in 1979 and 1982, respectively. We have monitored the size, distribution, reproductive rate, and substrate use of the resulting breeding population (1979–2016). The population proceeded through an establishment phase (1979–1993) driven by releases with an average …

Examining Patterns In Nest Predation Using Artificial Nests, Victoria L. Simonsen

School of Natural Resources: Dissertations, Theses, and Student Research

The use of artificial nests to study the predation of avian nests has faced disregard by ecologists due to inconsistencies found between the survival rates of real and artificial nests across studies and reviews. The negative perception of artificial nests providing an inconsistent assessment of survival has thus fostered the perception that artificial nests are a secondary option to be used to overcome logistical hurdles associated with achieving sufficient sample sizes in systems where study species are rare or elusive, or as merely a preliminary method to study predation across gradients. We argue that the greatest mistake ecologists have made …

Nebraska’S Wildlife Club; Nebraska Honors Program Clc Expanded Learning Opportunity Clubs, Alexandrea E. Otto

Honors Expanded Learning Clubs

The goal of the club is to educate and explore with students the wildlife and nature that surrounds them every day. The main focus was to educate students on wildlife native to Nebraska; ranging all the way from West Nebraska to the wildlife found in cities such as Lincoln.

Protecting Breeding Stock Levels Of The Blue Swimmer Crab Resource In The South West : A Review Of Management Arrangements, Department Of Primary Industries And Regional Development

Fisheries management papers

This discussion paper identifies that the existing management arrangements do not adequately address the protection of the breeding stock across the resource because they have been developed at the scale of local estuaries and embayments. In particular, the arragements are not achieving appropriate levels of protection for mated, pre-spawned females, which become highly vulnerable to capture in late autumn, winter and spring.

Mortality Rate Trends Of Australian Fur Seal Pups, Arctocephalus Pusillus Doriferus, And Possible Factors Affecting Pup Mortality In The Bass Strait Of Australia, Theresa Waters

Independent Study Project (ISP) Collection

Australian fur seals (AFS), Arctocephalus pusillus doriferus, are upper trophic predators endemic to the Bass Strait of south-eastern Australia. Their populations have been monitored since the mid-1900s to assess ecosystem health and the continual recovery of the species from extensive hunting in the early 19th century. The best way to track the environmental conditions and recovery of AFS populations is by monitoring the pups that are confined to the breeding colonies. This study looked particularly at the mortality rates of AFS pups because mortality of the young is a good indicator of population dynamics. The aim of this study was …

Dietary Docosahexaenoic Acid Prevents Silica-Induced Development Of Pulmonary Ectopic Germinal Centers And Glomerulonephritis In The Lupus-Prone Nzbwf1 Mouse, Melissa A. Bates, Peyman Akbari, Kristen N. Gilley, James G. Wagner, Ning Li, Anna K. Kopec, Kathryn A. Wierenga, Daven Jackson-Humbles, Christina Brandenberger, Andrij Holian, Abby D. Benninghoff, Jack R. Harkema, James J. Pestka

Animal, Dairy, and Veterinary Science Faculty Publications

Ectopic lymphoid structures (ELS) consist of B-cell and T-cell aggregates that are initiated de novo in inflamed tissues outside of secondary lymphoid organs. When organized within follicular dendritic cell (FDC) networks, ELS contain functional germinal centers that can yield autoantibody-secreting plasma cells and promote autoimmune disease. Intranasal instillation of lupus-prone mice with crystalline silica (cSiO₂), a respirable particle linked to human lupus, triggers ELS formation in the lung, systemic autoantibodies, and early onset of glomerulonephritis. Here we tested the hypothesis that consumption of docosahexaenoic acid (DHA), an ω-3 polyunsaturated fatty acid with anti-inflammatory properties, influences the temporal profile …

Marine Aquarium Fish Resource Of Western Australia Harvest Strategy : 2018 – 2022 : Version 1.0, Department Of Fisheries

Fisheries management papers

No abstract provided.

Ecosystem-Based Fisheries Management (Ebfm) Risk Assessment Of The Marine Aquarium Fish Managed Fishery 2014, Department Of Fisheries

Fisheries management papers

No abstract provided.

Draft Management Plan For The Southern Demersal Gillnet And Demersal Longline Managed Fishery, Department Of Fisheries

Fisheries management papers

No abstract provided.

Laboratory Evaluation Of Efficacy Of Entomopathogenic Nematodes On Texas Leaf-Cutting Ants, Atta Texana, Pushpa Soti, Quentin Van Camp, Alexis Racelis

Biology Faculty Publications and Presentations

Entomopathogenic nematodes, a large group of nematodes specialized for parasitism of insects, have been used as classical biological control agents. The nematodes have potential to be used for insect pest management in organic gardening. We studied the potential impact of two entomopathogenic nematodes Steinerneima carpocapsae Weiser and Heterohabditis bacteriophora Poinar on the Texas leaf-cutting ant, Atta texana Buckley, that is considered a problematic agricultural pest in the southern US. We used a relatively large exposure rate of 250,000 nematodes per 10 ants in Petri dishes and monitored ant activity during a 96-hour time period. Results showed no significant differences among …

Molecular Adaptations For Sensing And Securing Prey And Insight Into Amniote Genome Diversity From The Garter Snake Genome, Blair W. Perry, Daren C. Card, Joel W. Mcglothlin, Giulia I.M. Pasquesi, Richard H. Adams, Drew R. Schield, Nicole R. Hales, Andrew B. Corbin, Jeffery P. Demuth, Federico G. Hoffmann, Michael W. Vandewege, Ryan K. Schott, Nihar Bhattacharyya, Belinda S.W. Chang, Nicholas R. Casewell, Gareth Whiteley, Jacobo Reyes-Velasco, Stephen P. Mackessy, Tony Gamble, Kenneth B. Storey, Kyle K. Biggar, Courtney N. Passow, Chih-Horng Kuo, Suzanne E. Mcgaugh, Anne M. Bronikowski, A.P. Jason De Koning, Scott V. Edwards, Michael E. Pfrender, Patrick Minx, Edmund D. Brodie Jr., Edmund D. Brodie Jr., Wesley C. Warren, Todd A. Castoe

Biology Faculty Publications

Colubridae represents the most phenotypically diverse and speciose family of snakes, yet no well-assembled and annotated genome exists for this lineage. Here, we report and analyze the genome of the garter snake, Thamnophis sirtalis, a colubrid snake that is an important model species for research in evolutionary biology, physiology, genomics, behavior, and the evolution of toxin resistance. Using the garter snake genome, we show how snakes have evolved numerous adaptations for sensing and securing prey, and identify features of snake genome structure that provide insight into the evolution of amniote genomes. Analyses of the garter snake and other squamate reptile …

Assessment Of Northern Bobwhite Survival And Fitness In The West Gulf Coastal Plain Ecoregion, Jacob Doggett, Alexandra Locher

Funded Articles

In the West Gulf Coastal Plains (WGCP) northern bobwhite (Colinus virginianus) are declining faster than range-wide averages and such declines have been linked to the consequences of land management. Management for the endangered red-cockaded woodpecker (Picoides borealis) has benefitted northern bobwhite by restoring mature pine-grassland ecosystems in some areas of the region. However, at Felsenthal National Wildlife Refuge, Crossett, Arkansas, USA, the bobwhite population was not increasing despite the availability of seemingly suitable habitat from management for the endangered species. To understand factors that may be affecting bobwhite survival on Felsenthal National Wildlife Refuge we conducted …

Follow The Rain? Environmental Drivers Of Tyrannus Migration Across The New World, Maggie P. Macpherson, Alex E. Jahn, Michael T. Murphy, Daniel H. Kim, Victor R. Cueto, Diego T. Tuero, Elliot D. Hill

Biology Faculty Publications and Presentations

Predictable seasonal changes in resources are thought to drive the timing of annual animal migrations; however, we currently understand little about which environmental cues or resources are tracked by different migratory bird species across the planet. Understanding which environmental cues or resources birds track in multiple migratory systems is a prerequisite to developing generalizable conservation plans for migratory birds in a changing global environment. Within the New World, climatic differences experienced by Nearctic–Neotropical migratory (NNM; i.e. breed in North America and spend the nonbreeding period in the Neotropics) and Neotropical austral migratory (NAM; i.e. breed and spend the nonbreeding period …

Assessment Of Black Rail Status In Georgia, Interim Report: Summer 2018, B. D. Watts, B. J. Paxton, F. M. Smith

CCB Technical Reports

No abstract provided.

Assembly And Analysis Of Unmapped Genome Sequence Reads Reveal Novel Sequence And Variation In Dogs, Lindsay Adrian Holden, Meharji Arumilli, Marjo K. Hytönen, Sruthi Hundi, Jarkko Salojärvi, Kim H. Brown, Hannes Lohi

Biology Faculty Publications and Presentations

Dogs are excellent animal models for human disease. They have extensive veterinary histories, pedigrees, and a unique genetic system due to breeding practices. Despite these advantages, one factor limiting their usefulness is the canine genome reference (CGR) which was assembled using a single purebred Boxer. Although a common practice, this results in many high-quality reads remaining unmapped. To address this whole-genome sequence data from three breeds, Border Collie (n = 26), Bearded Collie (n = 7), and Entlebucher Sennenhund (n = 8), were analyzed to identify novel, non- CGR genomic contigs using the previously validated pseudo-de novo assembly pipeline. We …

Spatial And Temporal Patterns Of Arctic Nearshore Fish Community And Food Web Structures, Mark B. Barton

FIU Electronic Theses and Dissertations

Climate change and increasing anthropogenic activities are causing rapid changes to environmental and ecological processes in the Arctic Ocean. To better understand these changes, scientists have increased research efforts in these regions, but to date the number of studies on Arctic nearshore habitats are lacking. My dissertation responds to the paucity of information and investigates patterns in Arctic nearshore fish communities and food webs to gain insight to how these ecosystems may shift as these changes continue. I used multivariate statistical analysis to examine patterns in community structure and composition to determine that Arctic nearshore fish communities are largely driven …

Rivoli's Hummingbird: Eugenes Fulgens, Donald R. Powers

Faculty Publications - Department of Biological & Molecular Science

Rivoli's Hummingbird was named in honor of the Duke of Rivoli when the species was described by René Lesson in 1829. Even when it became known that William Swainson had written an earlier description of this species in 1827, the common name Rivoli's Hummingbird remained until the early 1980s, when it was changed to Magnificent Hummingbird. In 2017, however, the name was restored to Rivoli's Hummingbird when the American Ornithological Society officially recognized Eugenes fulgens as a distinct species from E. spectabilis, the Talamanca Hummingbird, of the highlands of Costa Rica and western Panama.

Rivoli's Hummingbird is found from the …

Invasive Aquatic Pets: Failed Policies Increase Risks Of Harmful Invasions, Jiří Patoka, André Lincoln Barroso Magalhães, Antonín Kouba, Zen Faulkes, Rikho Jerikho, Jean Ricardo Simões Vitule

Biology Faculty Publications and Presentations

Businesses in the pet trade collect and transport many aquatic species around the globe, and some of these individuals are released into new habitats. Some jurisdictions have introduced laws intended to regulate this trade, but these regulations have rarely had the desired effects. Laws regarding pets and the pet trade are often poorly communicated, poorly enforced, and not aligned with hobbyists’ beliefs. Consequently, some laws may increase the number of unwanted introductions instead of decreasing them. A significant change in approach is needed, involving far greater communication with scientists, administrations, politicians, the pet industry, and pet owners, promoting euthanasia of …

Small Mammals In Cornfields And Associated Peripheral Habitats In Central Nebraska, Tyson J. Spanel, Keith Geluso

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

In the Great Plains, many native grasslands have been converted to agricultural fields during the last two centuries. Peripheral habitats along edges of crop fields generally consist of linear habitats along roads, with many of these habitats used by native fauna. Our study examined capture rates and species composition of small mammals in cornfields, herbaceous roadside ditches, and wooded shelterbelts in central Nebraska. We captured nine species of small mammals. The Prairie Vole (Microtus ochrogaster) and Western Harvest Mouse (Reithrodontomys megalotis) were captured almost exclusively in roadside ditches, the White-footed Deermouse (Peromyscus leucopus) was …

Pearl Oyster (Pinctada Maxima) Resource Allocation Report : Prepared By The Integrated Fisheries Allocation Advisory Committee, Department Of Fisheries

Fisheries management papers

No abstract provided.

Predators Modify The Temperature Dependence Of Life-History Trade-Offs, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, John Delong

School of Biological Sciences: Faculty Publications

Although life histories are shaped by temperature and predation, their joint influence on the interdependence of life-history traits is poorly understood. Shifts in one life-history trait often necessitate shifts in another—structured in some cases by trade-offs— leading to differing life-history strategies among environments. The offspring size–number trade-off connects three traits whereby a constant reproductive allocation (R) constrains how the number (O) and size (S) of offspring change. Increasing temperature and size-independent predation decrease size at and time to reproduction which can lower R through reduced time for resource accrual or size-constrained fecundity. We investigated how O, S, and R in …

The Indestructible Insect: Velvet Ants From Across The United States Avoid Predation By Representatives From All Major Tetrapod Clades, Brian G. Gall, Kari L. Spivey, Trevor L. Chapman, Robert J. Delph, Edmund D. Brodie Jr., Joseph S. Wilson

Biology Faculty Publications

Velvet ants are a group of parasitic wasps that are well known for a suite of defensive adaptations including bright coloration and a formidable sting. While these adaptations are presumed to function in antipredator defense, observations between potential predators and this group are lacking. We conducted a series of experiments to determine the risk of velvet ants to a host of potential predators including amphibians, reptiles, birds, and small mammals. Velvet ants from across the United States were tested with predator’s representative of the velvet ants native range. All interactions between lizards, free-ranging birds, and a mole resulted in the …

Song Recognition And Heterospecific Associations Between 2 Fairy-Wren Species (Maluridae), Allison E. Johnson, Christina Masco, Stephen Pruett-Jones

School of Biological Sciences: Faculty Publications

Although heterospecific associations beneficial to one or both species involved (e.g. commensalisms or mutualisms) are common, it is generally assumed that interactions between species are transient and not particular to individuals. However, long-term interactions between individuals of different species do occur. In such heterospecific social groups, discrimination between heterospecific individuals may be beneficial, allowing individuals to direct beneficial or aggressive behaviors towards appropriate targets. Here, we describe heterospecific groups composed of splendid and variegated fairy-wrens (Malurus splendens and M. lamberti) and provide the first experimental evidence that recognition of heterospecific group members occurs across species. In these species, …

Morphological Traits As Indicators Of Sexual Dimorphism In Prairie Rattlesnakes (Crotalus Viridis), Colleen Rothe-Groleau, Claudia M. Rauter, James D. Fawcett

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

As humans encroach into areas inhabited by predators, the potential of human-predator confrontations increases and the predators become regarded as dangerous pests. Predators exert a measure of population control over pest species such as small rodents, as well as limit the quantity and scope of diseases (e.g. spread of Hantavirus by these prey species). Control of these small rodent pest species can be aided by conserving and managing their predators like rattlesnakes (Crotalus spp). Management of any population requires detailed information on population composition and the ability to determine the key information (especially age and sex) for each individual …

Draft Management Plan For The Pilbara Crab Managed Fishery, Department Of Fisheries

Fisheries management papers

No abstract provided.

Draft Management Plan For The Kimberley Crab Managed Fishery, Department Of Fisheries

Fisheries management papers

No abstract provided.

Twenty-Five Years Of Change In Spruce Grouse Occupancy At Their Southern Range Margin In Maine, Usa, Christopher J. Gilbert

Honors College

Species at their southern range margin are often dispersed throughout fragmented populations where they experience less optimum conditions compared to their central range. Spruce Grouse (Falcipennis canadensis) are boreal forest obligates distributed throughout the Northern United States and Canada and reach their southeastern range extent in Maine. I resurveyed 18 Black Spruce (Picea mariana) – Tamarack (Larix laricina) stands on Mount Desert Island, Maine, to observe changes in Spruce Grouse occupancy and abundance between the early 1990s (Whitcomb et al. 1996) and present day. I conducted two rounds of call back surveys within each …

Western Australian Sea Cucumber Resource - Harvest Strategy 2018-2023, Department Of Primary Industries And Regional Development

Fisheries management papers

This publication of harvest strategies is intended to make the decision-making considerations and processes for the management of specified aquatic resources publicly transparent and provide a basis for informed dialogue on management actions with resource users and other stakeholders.

Body Size Downgrading Of Mammals Over The Late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne

School of Biological Sciences: Faculty Publications

Since the late Pleistocene, large-bodied mammals have been extirpated from much of Earth. Although all habitable continents once harbored giant mammals, the few remaining species are largely confined to Africa. This decline is coincident with the global expansion of hominins over the late Quaternary. Here, we quantify mammalian extinction selectivity, continental body size distributions, and taxonomic diversity over five time periods spanning the past 125,000 years and stretching approximately 200 years into the future. We demonstrate that size-selective extinction was already under way in the oldest interval and occurred on all continents, within all trophic modes, and across all time …