Biology Commons^™

Geological And Ichthyological Investigations Into Palaeodrainage Hypothesis For The Tennessee River, Andrea Karen Persons

Dissertations

The course of the ancestral Tennessee River has been debated in both the geological and biological literature for over 100 years. Several of the proposed courses for the ancestral Tennessee place its course across the state of Mississippi. Geochemical analysis of sedimentary rocks in the Pascagoula River basin supports these hypotheses suggesting that the rocks in the Pascagoula basin were derived from the Highland Rim of Tennessee and northern Alabama, while geochemical analysis of rocks from the Pearl River basin point to deposition from a mixture of sources including the ancestral Mississippi River and perhaps the ancestral Tennessee. To delve …

A Comprehensive Uncertainty Analysis And Method Of Geometric Calibration For A Circular Scanning Airborne Lidar, Michael Oliver Gonsalves

Dissertations

This dissertation describes an automated technique for ascertaining the values of the geometric calibration parameters of an airborne lidar. A least squares approach is employed that adjusts the point cloud to a single planar surface which could be either a narrow airport runway or a dynamic sea surface. Going beyond the customary three boresight angles, the proposed adjustment can determine up to eleven calibration parameters to a precision that renders a negligible contribution to the point cloud’s positional uncertainty.

Presently under development is the Coastal Zone Mapping and Imaging Lidar (CZMIL), which, unlike most contemporary systems that use oscillating mirrors …

Life History And Habitat Use Of The Juvenile Alabama Shad (Alosa Alabamae) In Northern Gulf Of Mexico Rivers, Paul Fraser Mickle

Dissertations

The Alabama shad, Alosa alabamae, is an anadromous species that is in decline and has seen extirpations from impoundments as well as decreased water quality. Alabama shad live in the Gulf of Mexico and ascend Northern Gulf of Mexico Drainages to reproduce early in the year (January-May). The juveniles spend the majority of the year in these freshwater systems before emigrating out to the Gulf of Mexico as late as December.

This dissertation focuses on the juvenile life stages that occur within the Northern Gulf of Mexico drainages. Spawning conditions of the river, as well as the habitat and diet, …

Reproductive Life History Of Fundulus Jenkensi And Comparative Development Of Five Sympatric Fundulid Species, Eric Thomas Lang

Master's Theses

Fundulus jenkinsi is recognized federally and within the state of Mississippi as a Species of Concern. Little is known about the life history of this coastal killifish, but a detailed reproductive histology study of F. jenkinsi and a diagnostic key of the early life stages of select members of Fundulidae can provide the foundation needed to accurately identify it and quantify reproductive parameters in this rare species in need of conservation. Monthly gonadosomatic index (GSI) of male and female F. jenkinsi were documented, and spawning phases and oocyte stages were examined using reproductive histology. In addition, various stages of …

Algal Community Structure In Water Bodies Of Mississippi: The Role Of Environmental Factors In Its Spatial And Temporal Dynamics, Nestor Raul Anzola

Dissertations

A meta-analysis was done on studies that included six major taxa groups: Cyanobacteria, Chlorophyta, Chrysophyta (primarily diatoms), Euglenophyta, Pyrrophyta, and Rhodophyta and six aquatic habitats of Mississippi to determine the abundance and richness of the algal community and to identify relevant environmental drivers of algal assemblage composition. Twenty algae data sets on small order streams, large streams and rivers, lakes and reservoirs, fish production ponds, brackish water, and marine water were analyzed. Chlorophyta was dominant in lakes and reservoirs and was the most diverse taxa in the phytoplankton of small order streams and large streams and rivers. Cyanobacteria were the …

Patterns Of Diversity, Zoogeography, And Ecological Gradients In Honduran Freshwater Fishes, Wilfredo Antonio Matamoros

Dissertations

Nineteen major river drainages across Honduras were sampled from 2005-2009 in order to understand Honduran geographical patterns of freshwater fish distribution, to delineate the Honduran freshwater fishes ichthyographical provinces, and to understand patterns of species assemblage at the drainage level. A total of 166 species of freshwater fishes were sampled, a 64% increase over previously published reports. Eight species belong to primary freshwater families, 47 to secondary, and 111 to peripherals. In order to understand the species-drainages relationships, a presence-absence matrix was built for the 19 major drainages and 55 primary and secondary freshwater fishes. Correspondence and cluster analysis clearly …

Behavior And Physiology Of Hermit Crabs During Burial: Shell Abandonment And Lactate Accumulation, Janelle Allison Shives

Loma Linda University Electronic Theses, Dissertations & Projects

Organisms living in the intertidal zone must adapt to environmental and physical stressors. One physical stressor that these organisms may face, and that may require specific behavioral and physiological responses, is burial by sediment. In this thesis I report the results of experiments in which I subjected the intertidal hermit crab, Pagurus samuelis, to burial and analyzed aspects of subsequent behavior and physiology. In the first set of experiments, hermit crabs were buried with the shell aperture facing either up or down, and at one of three depths (2, 4, or 6 cm). The factors hermit crab weight, shell …

A Sea Change For Aquatic Sustainability : Meeting The Challenge Of Fish Resources Management And Aquatic Sustainability In The 21st Century, Department Of Fisheries

Fisheries occasional publications

No abstract provided.

Relationships Between Particle Properties And Scattering In Coastal Waters Of The Northern Gulf Of Mexico Influenced By The Mississippi River, Bruce Alan Spiering

Dissertations

This study was conducted to determine how the characteristics of an assemblage of suspended particles, including their composition and size affect the relationship between the optical scattering coefficient b (m-1), and the dry mass of the particles in suspension. Knowledge of the scattering to total suspended matter (TSM) ratio, i.e. the mass specific scattering coefficient b* (m2/g), is important because the light detected by optical imaging sensors used for remote sensing is the light that has been scattered by particles back through the water surface. If this ratio is not known or varies within the region of interest, accurate estimates …

Development Of Representative Species-Level Molecular Markers And Morphological Character Analysis Of Leucothoid Amphipods (Crustacea: Amphipoda), Kristine Nicolle White

Dissertations

Leucothoid amphipods were investigated using morphology and molecular rDNA gene sequence fragments. The morphological diagnostic characters for traditional taxonomy have been clarified, a molecular marker for representative species has been developed, and one of the current anamorph-leucomorph connections has been confirmed with molecular sequence data. Ultimately this study has combined traditional morphological and modern molecular methods to clarify the taxonomy and to propose a preliminary phylogeny of the Leucothoidae. Analysis of 18S rDNA gene fragments from 13 species in two genera supported the current morphological species designations and the separation of the family into two clades. Combined analysis of 18S …

Systematic Revision Of The Kalliapseudidae (Crustacea: Peracarida: Tanaidacea) And The Population Genetic Structure And Phylogeography Of A Species Along The Southeastern And Gulf Coasts Of North America, David Thomas Drumm

Dissertations

The Kalliapseudidae is a family of shallow burrow-dwelling marine and estuarine tanaidaceans. There are currently 39 known species of 12 genera and three subfamilies. They are primarily circumtropical in distribution; however, several species are found in temperate waters. The phylogeny of Kalliapseudidae is assessed to test the monophyly of currently accepted subfamilies and genera, based largely on examination of material loaned from various museums and institutions. Multiple exemplars from other apseudomorph families were also included in the ingroup to test the monophyly of the family. Parsimony analyses included 41 terminal taxa and 64 binary and multistate morphological characters. Analyses based …

Fishing Industry Impact Study : James Price Point Proposed Liquefied Natural Gas Precinct, Department Of Fisheries

Fisheries occasional publications

No abstract provided.

Shearwater Foraging In The Southern Ocean: The Roles Of Prey Availability And Winds, B Raymond, Scott A. Shaffer, S Sokolov, E Woehler, D P. Costa, L Einoder, M Hindell, G Hosie, M Pinkerton, P M. Sagar, D Scott, A Smith, D R. Thompson, C Vertigan, H Weimerskirch

Faculty Publications, Biological Sciences

Background Sooty (Puffinus griseus) and short-tailed (P. tenuirostris) shearwaters are abundant seabirds that range widely across global oceans. Understanding the foraging ecology of these species in the Southern Ocean is important for monitoring and ecosystem conservation and management. Methodology/Principal Findings Tracking data from sooty and short-tailed shearwaters from three regions of New Zealand and Australia were combined with at-sea observations of shearwaters in the Southern Ocean, physical oceanography, near-surface copepod distributions, pelagic trawl data, and synoptic near-surface winds. Shearwaters from all three regions foraged in the Polar Front zone, and showed particular overlap in the region around 140°E. Short-tailed shearwaters …

Niche Partitioning Among And Within Sympatric Tropical Seabirds Revealed By Stable Isotope Analysis, H S. Young, D J. Mccauley, R Dirzo, R D. Dunbar, Scott A. Shaffer

Faculty Publications, Biological Sciences

The low productivity and unpredictable nature of resources in tropical waters would appear to make resource partitioning among predators difficult. Yet, stable isotope data from the present study suggest that substantial resource partitioning occurs among tropical seabird communities, both between and within species. In the present study, we compared δ13C and δ15N levels among 8 sympatric tropical seabird species. For a subset of these species, we also examined isotopic levels across years, breeding periods, and sexes. When breeding and non-breeding periods were both considered, we found that all species occupied distinct isotopic niches across at least one time period. Resource …

Bacterial Acquisition In Juveniles Of Several Broadcast Spawning Coral Species, Koty H. Sharp, Kim B. Ritchie

Arts & Sciences Faculty Publications

Coral animals harbor diverse microorganisms in their tissues, including archaea, bacteria, viruses, and zooxanthellae. The extent to which coral-bacterial associations are specific and the mechanisms for their maintenance across generations in the environment are unknown. The high diversity of bacteria in adult coral colonies has made it challenging to identify species-specific patterns. Localization of bacteria in gametes and larvae of corals presents an opportunity for determining when bacterial-coral associations are initiated and whether they are dynamic throughout early development. This study focuses on the early onset of bacterial associations in the mass spawning corals Montastraea annularis, M. franksi, M. faveolata, …

Bryostatins: Biological Context And Biotechnological Prospects, Amaro E. Trindade-Silva, Grace E. Lim-Fong, Koty H. Sharp

Arts & Sciences Faculty Publications

Coral animals harbor diverse microorganisms in their tissues, including archaea, bacteria, viruses, and Bryostatins are a family of protein kinase C modulators that have potential applications in biomedicine. Found in miniscule quantities in a small marine invertebrate, lack of supply has hampered their development. In recent years, bryostatins have been shown to have potent bioactivity in the central nervous system, an uncultivated marine bacterial symbiont has been shown to be the likely natural source of the bryostatins, the bryostatin biosynthetic genes have been identified and characterized, and bryostatin analogues with promising biological activity have been developed and tested. Challenges in …

The Importance Of Open Access In Technology Transfer For Marine Ornamental Aquaculture: The Case Of Hobbyist-Led Breeding Initiative, Andrew L. Rhyne

Arts & Sciences Faculty Publications

Access to peer-reviewed literature is often restricted to a limited segment of the target audience. Barriers are in place to prevent open access information. Here, I present a case study of how the internet and hobbyists are transforming both access and flow of information from closed circles to open dialogue within the field of marine ornamental fish rearing. This open approach is leading to innovation a rate remarkably faster and at a lower costs than could have been accomplished by traditional methods. Aquaculture societies, aquarium professionals, hobbyists, and scientists pursuing the captive production of species should embrace this movement. Whether …

How U.S. Ocean Policy And Market Power Can Reform The Coral Reef Wildlife Trade, Brian N. Tissot, Barbara A. Best, Eric H. Borneman, Andrew W. Bruckner, Cara H. Cooper, Heather D’Agnes, Timothy P. Fitzgerald, Amanda Leland, Susan Lieberman, Amy Mathews Amos, Rashid Sumaila, Teresa M. Telecky, Frazer Mcgilvray, Brian J. Plankis, Andrew L. Rhyne, Glynnis G. Roberts, Benjamin Starkhouse, Todd C. Stevenson

Arts & Sciences Faculty Publications

As the world’s largest importer of marine ornamental species for the aquaria, curio, home décor, and jewelry industries, the United States has an opportunity to leverage its considerable market power to promote more sustainable trade and reduce the effects of ornamental trade stress on coral reefs worldwide. Evidence indicates that collection of some coral reef animals for these trades has caused virtual elimination of local populations, major changes in age structure, and promotion of collection practices that destroy reef habitats. Management and enforcement of collection activities in major source countries such as Indonesia and the Philippines remain weak. Strengthening US …

Effects Of Salinity On Reproduction And Survival Of The Calanoid Copepod Pseudodiaptomus Pelagicus, Cortney L. Ohs, Andrew L. Rhyne, Scott W. Grabe, Matthew A. Dimaggio, Erik Stenn

Arts & Sciences Faculty Publications

Four experiments were conducted on the calanoid copepod, Pseudodiaptomus pelagicus, to determine the effects of salinity on survival, development time, reproductive output, and population growth in order to define the optimal salinity for culture. To determine the appropriate experimental salinity range we exposed nauplii and adults to abrupt salinity changes from 35 g/L to 5, 10, 15, 35, 42, and 48 g/L at 30 °C and determined survival after 24 hours. The second experiment stocked early stage nauplii into 1 L beakers after which they were cultured using standard procedures for 10 days at six salinities (10, 15, 20, …

The Evolution Of Euhermaphroditism In Caridean Shrimps: A Molecular Perspective Of Sexual Systems And Systematics, G. Curt Fiedler, Andrew L. Rhyne, Ryoko Segawa, Tadashi Aotsuka, Nikolaos V V. Schizas

Arts & Sciences Faculty Publications

The hippolytid genus Lysmata is characterized by simultaneous hermaphroditism, a very rare sexual system among Decapoda. Specialized cleaning behavior is reported in a few pair-living species; these life history traits vary within the genus. Unfortunately, the systematics of Lysmata and the Hippolytidae itself are in contention, making it difficult to examine these taxa for trends in life history traits. A phylogeny of Lysmata and related taxa is needed, to clarify their evolutionary relationships and the origin of their unique sexual pattern. In this study, we present a molecular phylogenetic analysis among species of Lysmata, related genera, and several putative …

Shearwater Foraging In The Southern Ocean: The Roles Of Prey Availability And Winds, B Raymond, Scott A. Shaffer, S Sokolov, E Woehler, D P. Costa, L Einoder, M Hindell, G Hosie, M Pinkerton, P M. Sagar, D Scott, A Smith, D R. Thompson, C Vertigan, H Weimerskirch

Scott A. Shaffer

Background Sooty (Puffinus griseus) and short-tailed (P. tenuirostris) shearwaters are abundant seabirds that range widely across global oceans. Understanding the foraging ecology of these species in the Southern Ocean is important for monitoring and ecosystem conservation and management. Methodology/Principal Findings Tracking data from sooty and short-tailed shearwaters from three regions of New Zealand and Australia were combined with at-sea observations of shearwaters in the Southern Ocean, physical oceanography, near-surface copepod distributions, pelagic trawl data, and synoptic near-surface winds. Shearwaters from all three regions foraged in the Polar Front zone, and showed particular overlap in the region around 140°E. Short-tailed shearwaters …

Niche Partitioning Among And Within Sympatric Tropical Seabirds Revealed By Stable Isotope Analysis, H S. Young, D J. Mccauley, R Dirzo, R D. Dunbar, Scott A. Shaffer

Scott A. Shaffer

The low productivity and unpredictable nature of resources in tropical waters would appear to make resource partitioning among predators difficult. Yet, stable isotope data from the present study suggest that substantial resource partitioning occurs among tropical seabird communities, both between and within species. In the present study, we compared δ13C and δ15N levels among 8 sympatric tropical seabird species. For a subset of these species, we also examined isotopic levels across years, breeding periods, and sexes. When breeding and non-breeding periods were both considered, we found that all species occupied distinct isotopic niches across at least one time period. Resource …

Impacts Of The Spotted Spiny Lobster (Panulirus Guttatus) On The Long-Spined Sea Urchin (Diadema Antillarum) And Patch Reef Communities In The Florida Keys, Meredith D. Kintzing

Biological Sciences Theses & Dissertations

Caribbean coral reefs have undergone a phase shift from a system dominated by corals to one where algae are pervasive. This shift was precipitated by the loss of herbivores, including the mass mortality of the long spined sea urchin (Diadema antillarum), coupled with disease and the recruitment failure of hermatypic corals. Diadema populations have recovered in some areas of the Caribbean, but are still below historical levels in the Florida Keys, likely due to low larval supply coupled with predation on juveniles. Lobsters are sea urchin predators in other systems and the spotted spiny lobster (Panulirus guttatus …