Biology Commons^™

Overfishing Drives Over One-Third Of All Sharks And Rays Toward A Global Extinction Crisis, Nicholas K. Dulvy, Nathan Pacoureau, Cassandra L. Rigby, Riley A. Pollom, Rima W. Jabado, David A. Ebert, Brittany Finucci, Caroline M. Pollock, Jessica Cheok, Danielle H. Derrick, Katelyn B. Herman, C. Samantha Sherman, Wade J. Vanderwright, Julia M. Lawson, Rachel H.L. Walls, John K. Carlson, Patricia Charvet, Kinattumkara K. Bineesh, Daniel Fernando, Gina M. Ralph, Jay H. Matsushiba, Craig Hilton-Taylor, Sonja V. Fordham, Colin A. Simpfendorfer

Biological Sciences Faculty Publications

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The scale and drivers of marine biodiversity loss are being revealed by the International Union for Conservation of Nature (IUCN) Red List assessment process. We present the first global reassessment of 1,199 species in Class Chondrichthyes-sharks, rays, and chimeras. The first global assessment (in 2014) concluded that one-quarter (24%) of species were threatened. Now, 391 (32.6%) species are threatened with extinction. When this percentage of threat is applied to Data Deficient species, more than one-third (37.5%) of chondrichthyans are estimated to be threatened, with much of this change resulting from new information. Three species are Critically Endangered (Possibly Extinct), representing …

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Effects Of Patch Size, Fragmentation, And Invasive Species On Plant And Lepidoptera Communities In Southern Texas, James A. Stilley, Christopher A. Gabler

Biology Faculty Publications and Presentations

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Simple Summary

Human land use has removed habitats, separated habitats into small and disconnected fragments, and introduced foreign species, which all harm wildlife. South Texas is highly diverse and home to many endangered species, but human disturbance threatens its wildlife. In south Texas, we poorly understand how different aspects of human land use influence wildlife diversity and abundance. We studied this by surveying plants and butterflies in 24 habitat fragments in south Texas that differed in size, shape, type, and land use history. Human disturbance was extensive, and foreign and weedy species were dominant in most habitats. Habitat types had …

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Conservation Of South Florida Orchid Mycorrhizal Fungi, Ellen Garcia

FIU Electronic Theses and Dissertations

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Starting in the late 1800’s orchids were heavily poached, leaving many species to reach critically low numbers. Coupled with habitat loss and urbanization many orchid populations were extirpated in southern Florida. Due to lack of endosperm, orchid seeds are reliant on specific mycorrhizal fungi to obtain nutrients to enable growth and development resulting in very low germination rates in nature. The obligate relationship on mycorrhizal fungi complicates orchid re-establishment. The research project aims are (1) to evaluate the correlation between phenotypic traits and optimal growing conditions in various micro-climate, and (2) to assess the range of mycorrhizal fungi community in …

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An Illicit Artisanal Fishery For North Pacific White Sharks Indicates Frequent Occurrence And High Mortality In The Gulf Of California, Daniel J. Madigan, Natalie S. Arnoldi, Nigel E. Hussey, Aaron B. Carlisle

Integrative Biology Publications

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Large sharks shape ecosystems across their geographic ranges and have become a top research and conservation priority. Eastern North Pacific (ENP) white shark (Carcharodon carcharias) aggregations off the United States and Mexico are well described, but their population status is currently uncertain. Population assessments of ENP white sharks are complicated by migrations across international boundaries, vulnerability at aggregation sites, and undetermined mortality levels. While protective legislation exists both in the United States and Mexico, ongoing incidental and unreported catch may undermine assessments and management. Here, access to a clandestine artisanal fishery provides evidence for white shark abundance and mortality in …

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Agricultural Conservation Practices And Aquatic Ecological Responses, Richard E. Lizotte, Peter C. Smiley, Robert B. Gillespie, Scott S. Knight

Faculty and Student Publications

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Conservation agriculture practices (CAs) have been internationally promoted and used for decades to enhance soil health and mitigate soil loss. An additional benefit of CAs has been mitigation of agricultural runoff impacts on aquatic ecosystems. Countries across the globe have agricultural agencies that provide programs for farmers to implement a variety of CAs. Increasingly there is a need to demonstrate that CAs can provide ecological improvements in aquatic ecosystems. Growing global concerns of lost habitat, biodiversity, and ecosystem services, increased eutrophication and associated harmful algal blooms are expected to intensify with increasing global populations and changing climate. We conducted a …

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A Landscape-Level Assessment Of Restoration Resource Allocation For The Eastern Monarch Butterfly, Rodrigo Solis-Sosa, Arne Mooers, Maxim Larrivée, Sean Cox, Christina A.D. Semeniuk

Great Lakes Institute for Environmental Research Publications

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The Monarch butterfly eastern population (Danaus plexippus) is in decline primarily due to habitat loss. Current habitat restoration programs focus on re-establishing milkweed, the primary food resource for Monarch caterpillars, in the central United States of America. However, individual components of the Monarch life cycle function as part of an integrated whole. Here we develop the MOBU-SDyM, a migration-wide systems dynamics model of the Monarch butterfly migratory cycle to explore alternative management strategies’ impacts. Our model offers several advances over previous efforts, considering complex variables such as dynamic temperature-dependent developmental times, dynamic habitat availability, and weather-related mortality across the entire …

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Vignette 04: Olympia Oysters, Jodie Toft, Betsy Peabody

Institute Publications

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Olympia oysters (Ostrea lurida) are our only native oyster species here in the Salish Sea. Olympia oysters once covered an estimated 13-26% of the intertidal area in Puget Sound, mostly near the heads of inlets. A combination of overharvest, pollution, and habitat loss reduced the current population to less than 4% of historic numbers, though sparse numbers of Olympia oysters can still be found throughout most of their historic distribution. Looking to the future, as our region’s marine waters experience effects of climate change and ocean acidification (OA), native species such as the Olympia oyster may prove to …

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Habitat Loss On The Breeding Grounds Is A Major Contributor To Population Declines In A Long-Distance Migratory Songbird, Michael T. Hallworth, Erin Bayne, Emily Mckinnon, Oliver Love, Junior A. Tremblay, Bruno Drolet, Jacques Ibarzabal, Steven Van Wilgenburg, Peter P. Marra

Great Lakes Institute for Environmental Research Publications

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Many migratory species are declining and for most, the proximate causes of their declines remain unknown. For many long-distance Neotropical migratory songbirds, it is assumed that habitat loss on breeding or non-breeding grounds is a primary driver of population declines. We integrated data collected from tracking technology, community science and remote sensing data to quantify migratory connectivity (MC), population trends and habitat loss. We quantified the correlation between forest change throughout the annual cycle and population declines of a long-distance migratory songbird, the Connecticut warbler (Oporornis agilis, observed decline: -8.99% yr -1). MC, the geographic link between populations during two …

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The Big Picture: Consolidating National Government And Cites Records Of Animal Trade In The Philippines From 1975 To 2019, Ronald Allan L. Cruz, Catherine Genevieve B. Lagunzad

Biology Faculty Publications

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The Philippines has exceptionally high biodiversity but is also a hotspot. It is a recognized source; destination; and transit point for the global wildlife trade; which drives biodiversity loss. There is an abundance of data from the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) on the Philippines; but this data has not been assessed for historical trends. Confiscation data reflecting the illegal trade is scarcer; coming from recent (2008 onward) records of the Department of Environment and Natural Resources ___ Biodiversity Management Bureau (DENR-BMB) and the Palawan Council for Sustainable Development (PCSD). CITES data …

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From Coast To Coast To Coast: Ecology And Management Of Eelgrass Systems Across Canada, Sarah Joy Bittick

Biology Faculty Works

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Seagrass meadows are among the most productive and diverse marine ecosystems, providing essential structure, functions, and services. They are also among the most impacted by human activities and in urgent need of better management and protection. In Canada, eelgrass (Zostera marina) meadows are found along the Atlantic, Pacific, and Arctic coasts, and thus occur across a wide range of biogeographic conditions. Here, we synthesize knowledge of eelgrass ecosystems across Canada’s coasts, highlighting commonalities and differences in environmental conditions, plant, habitat, and community structure, as well as current trends and human impacts. Across regions, eelgrass life history, phenology, and general species …

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A Review And Comparison Of U.S. State Wildlife Action Plans For Stonefly (Insecta, Plecoptera) Species Of Greatest Conservation Need, Kathryn Greene

Mahurin Honors College Capstone Experience/Thesis Projects

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State Wildlife Action Plans (SWAPs) were created in order to identify Species of Greatest Conservation Need (SGCN) and develop plans to prevent their populations from further decline and the possibility of being listed as threatened or endangered. Which SGCNs are included are decided based on characteristics that determine their vulnerability. As of early 2021, approximately 720stoneflies (Insecta, Plecoptera) species are found in the U.S., but only 143 are listed as SGCN. Only 29 states have stoneflies included on their SGCN lists, but 37 states use EPT (Ephemeroptera + Plecoptera + Trichoptera) metrics when assessing water quality issues in running water …

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Multiple Complementary Studies Clarify Which Co-Occurring Congener Presents The Greatest Hybridization Threat To A Rare Texas Endemic Wildflower (Hibiscus Dasycalyx: Malvaceae), Melody P. Sain, Julia Norrell-Tober, Katherine Barthel, Megan Seawright, Alyssa Blanton, Kate L. Hertweck, John S. Placyk, Jr., Randall Small, Lance R. Williams, Marsha G. Williams, Joshua A. Banta

Biology Faculty Publications and Presentations

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The Neches River Rose Mallow (Hibiscus dasycalyx) is a rare wildflower endemic to Texas that is federally protected in the U.S.A. While previous work suggests that H. dasycalyx may be hybridizing with its widespread congeners, the Halberd-leaved Rose Mallow (H. laevis) and the Woolly Rose Mallow (H. moscheutos), this has not been studied in detail. We evaluated the relative threats to H. dasycalyx posed by hybridization with H. laevis and H. moscheutos by 1) examining their relatedness to one another via modern phylogenomic methods, 2) examining their ecological (dis)similarities to one another using ecological niche modeling, and 3) looking for …

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Dung Beetle (Scarabaeinae) Diversity Of The Highest Elevation In West Africa: The Nimba Mountain Range, Jacob Bowen

Mahurin Honors College Capstone Experience/Thesis Projects

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The Nimba Mountain Range in Guinea, Ivory Coast, and Liberia is within the Upper Guinean Forests, a critical biodiversity hotspot highly threatened by various human activities. The region is home to many endemic species including the viviparous Nimba toad, Nimba otter-shrew, and the discrete Bossou chimpanzee population. Dung beetles can act as a focal taxon from which extrapolation to the diversity of other taxa and ecosystem health can be made. Elevational trends in dung beetle diversity were investigated on the Nimba Mountain Range and in the nearby Bossou Chimpanzee reserve in Guinea. Dung beetle species diversity surveys aimed to document …

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Rivfishtime: A Global Database Of Fish Time-Series As A Currency For Global Change Ecology Research In Riverine Systems, Lise Comte, Juan Carvajal-Quintero, Pablo A. Tedesco, Ulrich Brose, Tibor Erős, Ana F. Filipe, Marie-Josée Fortin, Katie Irving, Claire Jacquet, Christopher M. Taylor

Biology Faculty Publications and Presentations

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Motivation

We compiled a global database of long-term riverine fish surveys from 46 regional and national monitoring programmes and from individual academic research efforts, with which numerous basic and applied questions in ecology and global change research can be explored. Such spatially and temporally extensive datasets have been lacking for freshwater systems in comparison to terrestrial ones.

Main types of variables contained

The database includes 11,386 time-series of riverine fish community catch data, including 646,270 species-specific abundance records, together with metadata related to the geographical location and sampling methodology of each time-series.

Spatial location and grain

The database contains 11,072 …

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Rapid Survey Of Anuran Species In Baguio-Benguet Area And Isolation Of Their Fungal Symbionts, Arthien Lovell P. Pelingen, Camille Andrea Flores, Axel John Briz, Roland Hipol, Celia Austria

Biology Faculty Publications

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Baguio City is one of the fastest-growing centers of urbanization in the Philippines. As part of the Cordillera Mountain Range, it is a biodiversity hotspot that is largely unexplored. This study is a preliminary investigation using visual encounter surveys of anuran species in various localities of the Baguio-Benguet area (BBA). These include Loakan Airport (LA), Camp John Hay (CJH), and Soroptimist Compound (SC) at the Military Cut Off, all in Baguio; Nangalisan, Tuba (NT), Benguet; and Master’s Garden (MG) at Puguis, La Trinidad, Benguet. We documented three Luzon-endemic species of frogs – namely, Kaloula rigida (Family Microhylidae), Sanguirana luzonensis (Family …

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Investigation Into The Genetic Provenance Of Three Rare Plants With East-West Disjunction Patterns In Pennsylvania., Scott Schuette, Christopher T. Martine

Other Faculty Research and Publications

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Rare plant conservation relies on an understanding of the natural history, biology and ecology, and real and potential threats to their populations to inform state regulations that serve to protect the species from extirpation. This work often involves extensive field surveys over several years to determine population sizes and whether those populations are seeing reductions in number of individuals necessary to maintain the genetic diversity within and between those populations. Species and populations with high genetic diversity are better equipped to withstand sudden changes to their habitats that derive from land use changes and changing climate. There are a variety …

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Lepidopteran Granivory Reduces Seed Counts In A Rare Species Of Riparian Scour Prairies, Cheyenne Moore, Angela J. Mcdonnell, Scott Schuette, Christopher T. Martine

Faculty Journal Articles

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In Pennsylvania Baptisia australis var. australis is found along only four waterways: the Allegheny River, Youghiogheny River, Clarion River, and Red Bank Creek. Because of its limited distribution and small number of extant populations, the species is considered state-threatened in Pennsylvania. In addition, the riparian prairie habitat that Pennsylvania Baptisia australis var. australis is restricted to is also in decline and considered vulnerable. Because of these conservation concerns, insights into the natural history of the taxon in the state is valuable and will inform conservation efforts. Field surveys and fruit collections along the Allegheny River and herbarium collections were used …

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