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Full-Text Articles in Biology
[Accepted Article Manuscript Version (Postprint)] Identification And Functional Characterization Of Arabidopsis Peroxin4 And The Interacting Protein Peroxin22, Bethany Zolman, Melanie Monroe-Augustus, Illeana Silva, Bonnie Bartel
[Accepted Article Manuscript Version (Postprint)] Identification And Functional Characterization Of Arabidopsis Peroxin4 And The Interacting Protein Peroxin22, Bethany Zolman, Melanie Monroe-Augustus, Illeana Silva, Bonnie Bartel
Biology Department Faculty Works
Peroxins are genetically defined as proteins necessary for peroxisome biogenesis. By screening for reduced response to indole-3-butyric acid, which is metabolized to active auxin in peroxisomes, we isolated an Arabidopsis thaliana peroxin4 (pex4) mutant. This mutant displays sucrose-dependent seedling development and reduced lateral root production, characteristics of plant peroxisome malfunction. We used yeast two-hybrid analysis to determine that PEX4, an apparent ubiquitinconjugating enzyme, interacts with a previously unidentified Arabidopsis protein, PEX22. A pex4 pex22 double mutant enhanced pex4 defects, confirming that PEX22 is a peroxin. Expression of both Arabidopsis genes together complemented yeast pex4 or pex22 mutant defects, whereas expression …
Climatic Unpredictability And Parasitism Of Caterpillars: Implications Of Global Warming, John Stireman, Lee Dyer, D. Janzen, M. Singer, J. Lill, R. Marquis, R. Ricklefs, G. Gentry, W. Hallwachs, P. Coley, J. Barone, H. Greeney, H. Connahs, P. Barbosa, H. Morais, I. Diniz
Climatic Unpredictability And Parasitism Of Caterpillars: Implications Of Global Warming, John Stireman, Lee Dyer, D. Janzen, M. Singer, J. Lill, R. Marquis, R. Ricklefs, G. Gentry, W. Hallwachs, P. Coley, J. Barone, H. Greeney, H. Connahs, P. Barbosa, H. Morais, I. Diniz
Biology Department Faculty Works
Insect outbreaks are expected to increase in frequency and intensity with projected changes in global climate through direct effects of climate change on insect populations and through disruption of community interactions. Although there is much concern about mean changes in global climate, the impact of climatic variability itself on species interactions has been little explored. Here, we compare caterpillar–parasitoid interactions across a broad gradient of climatic variability and find that the combined data in 15 geographically dispersed databases show a decrease in levels of parasitism as climatic variability increases. The dominant contribution to this pattern by relatively specialized parasitoid wasps …
Flexible Social Structure Of A Desert Rodent, Rhombomys Opimus: Philopatry, Kinship, And Ecological Constraints, Jan Randall, Konstantin Rogovin, Patricia Parker, John Eimes
Flexible Social Structure Of A Desert Rodent, Rhombomys Opimus: Philopatry, Kinship, And Ecological Constraints, Jan Randall, Konstantin Rogovin, Patricia Parker, John Eimes
Biology Department Faculty Works
We tested hypotheses based on philopatry, kinship, and ecological constraints to explain sociality in a semifossorial desert rodent, the great gerbil, Rhombomys opimus. Data were collected in the field in Uzbekistan in the spring and fall of 1996 and 1998–2004. Population densities fluctuated dramatically with high turnover in both males and females to reveal that dispersal and social structure were density dependent. Fewer gerbils dispersed at higher densities and members of family groups dispersed together. A majority of females lived in groups at high densities, but as population densities declined, proportionally more females were solitary. DNA analysis revealed that group-living …
Bateman Gradients In Field And Laboratory Studies: A Cautionary Tale, Patricia Parker, Zuleyma Tang-Martinez
Bateman Gradients In Field And Laboratory Studies: A Cautionary Tale, Patricia Parker, Zuleyma Tang-Martinez
Biology Department Faculty Works
Since tools of molecular genetics became readily available, our understanding of bird mating systems has undergone a revolution. The majority of passerine species investigated are socially monogamous, but have been shown to be genetically polygamous. Data sets from natural populations of juncos suggest that multiple mating by females results in a sexual selection gradient as steep for females as for males (a result that does not support Bateman's predictions). However, in males, fitness is enhanced directly through fertilization success with multiple matings; in females fitness benefits may be enhanced immediately through direct access to food, protection against predators, or other …
Regulatory Functions Of Phospholipase D And Phosphatidic Acid In Plant Growth, Development, And Stress Responses, Xuemin Wang
Regulatory Functions Of Phospholipase D And Phosphatidic Acid In Plant Growth, Development, And Stress Responses, Xuemin Wang
Biology Department Faculty Works
No abstract provided.
Extrapair Fertilization And Genetic Similarity Of Social Mates In The Mexican Jay, John Eimes, Patricia Parker, Jerram Brown, Esther Brown
Extrapair Fertilization And Genetic Similarity Of Social Mates In The Mexican Jay, John Eimes, Patricia Parker, Jerram Brown, Esther Brown
Biology Department Faculty Works
Inbreeding depression should favor the ability of females to avoid inbreeding or minimize its effects. We tested for a relationship between genetic similarity of social pairs and the occurrence of extrapair fertilization (EPF) in the Mexican jay (Aphelocoma ultramarina). Multilocus minisatellite and microsatellite DNA fingerprinting was used to detect extrapair young and measure genetic similarity between social parents. We found that 12 of 31 (39%) nests had at least one EPF and 15 of 93 (16%) young were the result of EPF. The mean DNA fingerprinting band sharing score between social mates who had at least one EPF was significantly …
Correlational Selection Leads To Genetic Integration Of Body Size And An Attractive Plumage Trait In Dark-Eyed Juncos, Joel Mcglothlin, Patricia Parker, Val Nolan, Ellen Ketterson
Correlational Selection Leads To Genetic Integration Of Body Size And An Attractive Plumage Trait In Dark-Eyed Juncos, Joel Mcglothlin, Patricia Parker, Val Nolan, Ellen Ketterson
Biology Department Faculty Works
When a trait's effect on fitness depends on its interaction with other traits, the resultant selection is correlational and may lead to the integration of functionally related traits. In relation to sexual selection, when an ornamental trait interacts with phenotypic quality to determine mating success, correlational sexual selection should generate genetic correlations between the ornament and quality, leading to the evolution of honest signals. Despite its potential importance in the evolution of signal honesty, correlational sexual selection has rarely been measured in natural populations. In the dark‐eyed junco (Junco hyemalis), males with experimentally elevated values of a plumage trait (whiteness …
Plant Ontology (Po): A Controlled Vocabulary Of Plant Structures And Growth Stages, Pankaj Jaiswal, Shulamit Avraham, Katica Ilic, Elizabeth Kellogg, Susan Mccouch, Anuradha Pujar, Leonore Reiser, Seung Rhee, Martin Sachs, Mary Schaeffer, Lincoln Stein, Peter Stevens, Leszek Vincent, Doreen Ware, Felipe Zapata
Plant Ontology (Po): A Controlled Vocabulary Of Plant Structures And Growth Stages, Pankaj Jaiswal, Shulamit Avraham, Katica Ilic, Elizabeth Kellogg, Susan Mccouch, Anuradha Pujar, Leonore Reiser, Seung Rhee, Martin Sachs, Mary Schaeffer, Lincoln Stein, Peter Stevens, Leszek Vincent, Doreen Ware, Felipe Zapata
Biology Department Faculty Works
The Plant Ontology Consortium (POC) (www.plantontology.org) is a collaborative effort among several plant databases and experts in plant systematics, botany and genomics. A primary goal of the POC is to develop simple yet robust and extensible controlled vocabularies that accurately reflect the biology of plant structures and developmental stages. These provide a network of vocabularies linked by relationships (ontology) to facilitate queries that cut across datasets within a database or between multiple databases. The current version of the ontology integrates diverse vocabularies used to describe Arabidopsis, maize and rice (Oryza sp.) anatomy, morphology and growth stages. Using the ontology browser, …
Yeast Puf3 Mutants Reveal The Complexity Of Puf-Rna Binding And Identify A Loop Required For Regulation Of Mrna Decay, Wendy Olivas, S. Houshmandi
Yeast Puf3 Mutants Reveal The Complexity Of Puf-Rna Binding And Identify A Loop Required For Regulation Of Mrna Decay, Wendy Olivas, S. Houshmandi
Biology Department Faculty Works
The eukaryotic Puf proteins regulate mRNA translation and degradation by binding the 3' untranslated regions of target mRNAs. Crystal structure analysis of a human Puf bound to RNA suggested a modular mode of binding, with specific amino acids within each of eight repeat domains contacting a single nucleotide of the target RNA. Here we study the mechanism by which the yeast Puf3p binds and stimulates the degradation of COX17 mRNA. Mutation of the predicted RNA-binding positions of Puf3p to those found in Puf5p demonstrated that a single amino acid change in Puf3p abolished detectable binding to COX17. Since this amino …
Profiling Condition-Specific, Genome-Wide Regulation Of Mrna Stability In Yeast, Wendy Olivas, B. Foat, S. Houshmandi, H. Bussemaker
Profiling Condition-Specific, Genome-Wide Regulation Of Mrna Stability In Yeast, Wendy Olivas, B. Foat, S. Houshmandi, H. Bussemaker
Biology Department Faculty Works
The steady-state abundance of an mRNA is determined by the balance between transcription and decay. Although regulation of transcription has been well studied both experimentally and computationally, regulation of transcript stability has received little attention. We developed an algorithm, MatrixREDUCE, that discovers the position-specific affinity matrices for unknown RNA-binding factors and infers their condition-specific activities, using only genomic sequence data and steady-state mRNA expression data as input. We identified and computationally characterized the binding sites for six mRNA stability regulators in Saccharomyces cerevisiae, which include two members of the Pumilio-homology domain (Puf) family of RNA-binding proteins, Puf3p and Puf4p. We …