Biology Commons^™

Understanding The Impacts Of Current And Future Environmental Variation On Central African Amphibian Biodiversity, Courtney A. Miller

University of New Orleans Theses and Dissertations

Global climate change is projected to impact multiple levels of biodiversity by imposing strong selection pressures on existing populations, triggering shifts in species distributions, and reorganizing entire communities. The Lower Guineo-Congolian region in central Africa, a reservoir for amphibian diversity, is predicted to be severely affected by future climate change through rising temperatures and greater variability in rainfall. Geospatial modelling can be used to assess how environmental variation shapes patterns of biological variation – from the genomic to the community level – and use these associations to predict patterns of biological change across space and time. The overall goal of …

Legacy Habitat Suitability Of Eastern Oysters (Crassostrea Virginica) In Louisiana: A Prelude To Mississippi River Delta Freshwater Diversions, Tasia Mv Denapolis

University of New Orleans Theses and Dissertations

The Louisiana oyster industry is greatly impacted by freshwater and sediment diversions that are part of the effort to restore the state’s coastline. A habitat suitability index (HSI) proposes species-habitat relationships that can be instrumental in creating impact assessments and suitability predictions for management as new diversions are implemented. An oyster (Crassostrea virginica) HSI was developed using three variables crucial to oyster sustainability: average annual salinity, minimum monthly salinity, and average salinity during the spawning season. These Legacy HSI visualizations show annual fluctuations in the distribution of zones suitable for oyster cultivation prior to proposed diversions in Pontchartrain …

Patterns Of Genetic Structure In The American Kestrel (Falco Sparverius): Influence Of Distance And Migration And Implications For Monitoring And Management, Michaela Brinkmeyer

Boise State University Theses and Dissertations

Genetic structure is useful for inferring patterns of selection, gene flow and connectivity, and can define management units that aid in interpretation of spatially-specific trends and species management. American kestrels (Falco sparverius) are a widespread, generalist species with fully migratory, partial migrant, and resident populations. In many parts of their range, kestrels show evidence of declining population trends; however, it has been difficult to identify threats to kestrels because of differences in regional trends. We used a genome-wide sequencing approach to investigate the genetic structure of American kestrels, test hypotheses about the processes that influence genetic structuring of …

Resource Assessment Report: Temperate Demersal Elasmobranch Resource Of Western Australia, Matias Braccini, Nick Blay, S. A. Hesp, Brett Molony

Fisheries research reports

This document provides a cumulative description and assessment of the Temperate Demersal Elasmobranch Resource (TDER) and all of the fishing activities (i.e. fisheries / fishing sectors) affecting this resource in WA. Future Resource Assessment Reports will assess the State-wide sharks and rays resource.

The report is focused on the temperate indicator species (whiskery, gummy, dusky and sandbar sharks) used to assess the suites of demersal sharks and rays that comprise this resource. These species are primarily captured by demersal gillnets used in the Temperate Demersal Gillnet and Demersal Longline Fisheries (TDGDLF) that operate in the West Coast and South Coast …

Resource Assessment Report Temperate Demersal Elasmobranch Resource Of Western Australia, Matias Braccini, Nick Blay, S. A. Hesp, Brett Molony

Fisheries research reports

This document provides a cumulative description and assessment of the TDER and all of the fishing activities (i.e. fisheries / fishing sectors) affecting this resource in WA. Future Resource Assessment Reports will assess the Statewide Sharks and Rays Resource. The report is focused on the temperate indicator species (whiskery, gummy, dusky and sandbar sharks) used to assess the suites of demersal sharks and rays that comprise this resource. These species are primarily captured by demersal gillnets used in the TDGDLF that operate in the West Coast and South Coast Bioregions. For the North Coast bioregion, no commercial fishing for sharks …

Review Of The Family Rivulidae (Cyprinodontiformes, Aplocheiloidei) And A Molecular And Morphological Phylogeny Of The Annual Fish Genus Austrolebias Costa 1998, Marcelo Loureiro, Rafael O. De Sá, Sebastián W. Serra, Felipe Alonso, Luis Esteban Krause Lanés, Matheus Vieira Volcan, Pablo Calviño, Dalton Nielsen, Alejandro Duarte, Graciela Garcia

Biology Faculty Publications

The family Rivulidae is the fourth most diverse clade of Neotropical fishes. Together with some genera of the related African family Nothobranchiidae, many rivulids exhibit a characteristic annual life cycle, with diapausing eggs and delayed embryonic development, which allows them to survive in the challenging seasonal ponds that they inhabit. Rivulidae also includes two species known as the only the self-fertilizing vertebrates and some species with internal fertilization. The first goal of this article is to review the systematics of the family considering phylogenetic relationships and synapomorphies of subfamilial clades, thus unifying information that is dispersed throughout the literature. From …

Factors Affecting Green Turtle Foraging Ecology Across Multiple Spatial Scales, Elizabeth Rose Whitman

FIU Electronic Theses and Dissertations

The hierarchical levels at which resource selection occurs can have important consequences for individual and population energy budgets and structure the impacts of a forager on its ecosystem. Assessing factors affecting resource selection of large marine herbivores across scales is important because of their potentially large impacts on seagrass community dynamics and historical and current changes in their population sizes and those of their potential predators. I explored the factors (predation risk, resource abundance, quality and identity) affecting resource use of large marine herbivores (green turtles, Chelonia mydas) from the scale of habitat patches to forage species within patches. …

Protecting Breeding Stock Levels Of The Blue Swimmer Crab Resource In The South West : A Review Of Management Arrangements, Department Of Primary Industries And Regional Development

Fisheries management papers

This discussion paper identifies that the existing management arrangements do not adequately address the protection of the breeding stock across the resource because they have been developed at the scale of local estuaries and embayments. In particular, the arragements are not achieving appropriate levels of protection for mated, pre-spawned females, which become highly vulnerable to capture in late autumn, winter and spring.

Multiple Facets Of Biodiversity Drive The Diversity-Stability Relationship, Dylan Craven, Nico Eisenhauer, William D. Pearse, Yann Hautier, Christiane Roscher, Forest Isbell, Michael Bahn, Carl Beierkuhnlein, Gerhard Bönisch, Nina Buchmann, Chaeho Byun, Jane A. Catford, Bruno E.L. Cerabolini, J. Hans C. Cornelissen, Joseph M. Craine, Enrica De Luca, Anne Ebeling, John N. Griffin, Andy Hector, Jes Hines, Anke Jentsch, Jens Kattge, Jürgen Kreyling, Vojtech Lanta, Nathan Lemoine, Sebastian T. Meyer, Vanessa Minden, Vladimir Onipchenko, H. Wayne Polley, Peter B. Reich, Jasper Van Ruijven, Brandon Schamp, Melinda D. Smith, Nadejda A. Soudzilovskaia, David Tilman, Alexandra Weigelt, Brian Wilsey, Peter Manning

Biology Faculty Publications

A significant body of evidence has demonstrated that biodiversity stabilizes ecosystem functioning over time in grassland ecosystems. However, the relative importance of different facets of biodiversity underlying the diversity–stability relationship remains unclear. Here we used data from 39 biodiversity experiments and structural equation modeling to investigate the roles of species richness, phylogenetic diversity, and both the diversity and community-weighted mean of functional traits representing the ‘fast–slow’ leaf economics spectrum in driving the diversity–stability relationship. We found that high species richness and phylogenetic diversity stabilize biomass production via enhanced asynchrony. Contrary to our hypothesis, low phylogenetic diversity also enhances ecosystem stability …

Yardwork: A Biography Of An Urban Place By Daniel Coleman, Vivian M. Hansen

The Goose

Review of Daniel Coleman's Yardwork: A Biography of an Urban Place.

Genetic Diversity In An Invasive Clonal Plant? A Historical And Contemporary Perspective, Elliot D. Weidow

University of New Orleans Theses and Dissertations

Introduced populations of Eichhornia crassipes (Pontederiaceae) possess extremely low levels of genetic diversity due to severe bottleneck events and clonal reproduction. While populations elsewhere have been well studied, North American populations of E. crassipes remain understudied. We used Amplified Fragment Length Polymorphism markers to assess genetic diversity and population structure in North American E. crassipes populations. Patterns of diversity over the past fifty years were analyzed using herbarium specimens. Furthermore, we sampled populations across the Gulf Coast of the United States throughout a year to determine contemporary genetic diversity and assess potential seasonal effects. Genetic diversity was found to be …

Plants And Their Uses; How Communities Of Tolipir, Pakistan Get Benefit, Abu Ul Hassan Faiz, Mehboob Ul Hassan, Fida Muhammad Khan, Lariab Zahra Faiz, Hina Farooq

Journal of Bioresource Management

The present study documented ethnobotanical uses of 156 plant species belonged to 93 genera and 51 families listed from five villages of Tolipir landscape (Ali Sojhal, Kanchi Kot, Khori Chana, Kahoo Kot and Noor Kot villages). Study revealed that most of the species were used medicinally, leaves found to be the most frequently used part, for preparation of indigenous recipes and fodder purpose. The current study empirically contributes a huge chunk of ethnobotanical knowledge and depicts its strong connection with indigenous traditions. It is an urgent need to document indigenous uses of plants for future domestication.

Australian Herring And West Australian Salmon Scientific Workshop Report, October 2017, Department Of Primary Industries And Regional Development, Western Australia

Fisheries research reports

No abstract provided.

Evolutionary And Population Dynamics Of Crustaceans In The Gulf Of Mexico, Laura Timm

FIU Electronic Theses and Dissertations

Evolution occurs and can be conceptualized along a spectrum, bounded on one extreme by the relationships between deep lineages – such as phyla, classes, and orders – and on the other by the molecular dynamics of operational taxonomic units within a species, defined as population genetics. The purpose of this dissertation was to better understand the evolutionary and population dynamics of crustaceans within the Gulf of Mexico. In the second chapter of my dissertation, I provide a guide to best phylogenetic practice while reviewing infraordinal relationships within Decapoda, including the promise held by next-generation sequencing (NGS) approaches such as Anchored …

Pearl Oyster (Pinctada Maxima) Resource Allocation Report : Prepared By The Integrated Fisheries Allocation Advisory Committee, Department Of Fisheries

Fisheries management papers

No abstract provided.

Integrating Species Traits Into Species Pools, Marko J. Spasojevic, Christopher P. Catano, Joseph A. Lamanna

Biology Faculty Publications & Presentations

Despite decades of research on the species‐pool concept and the recent explosion of interest in trait‐based frameworks in ecology and biogeography, surprisingly little is known about how spatial and temporal changes in species‐pool functional diversity (SPFD) influence biodiversity and the processes underlying community assembly. Current trait‐based frameworks focus primarily on community assembly from a static regional species pool, without considering how spatial or temporal variation in SPFD alters the relative importance of deterministic and stochastic assembly processes. Likewise, species‐pool concepts primarily focus on how the number of species in the species pool influences local biodiversity. However, species pools with similar …

Radical Social Ecology As Deep Pragmatism: A Call To The Abolition Of Systemic Dissonance And The Minimization Of Entropic Chaos, Arielle Brender

Student Theses 2015-Present

This paper aims to shed light on the dissonance caused by the superimposition of Dominant Human Systems on Natural Systems. I highlight the synthetic nature of Dominant Human Systems as egoic and linguistic phenomenon manufactured by a mere portion of the human population, which renders them inherently oppressive unto peoples and landscapes whose wisdom were barred from the design process. In pursuing a radical pragmatic approach to mending the simultaneous oppression and destruction of the human being and the earth, I highlight the necessity of minimizing entropic chaos caused by excess energy expenditure, an essential feature of systems that aim …

Social Play Predicts Docility In Juvenile Ground Squirrels, James Hurst-Hopf, Scott L. Nunes

Undergraduate Honors Theses

We evaluated the hypothesis that social play behavior influences the development of temperament in young animals, using docility as a measure of temperament. We observed the play behavior of juvenile Belding’s ground squirrels (Urocitellus beldingi) during the developmental period in which play primarily occurs, and conducted behavioral tests measuring docility at the beginning and end of the play interval. Tests involved handling squirrels and recording their responses. Body mass was a reliable predictor of docility at the beginning of the play period. Rates of social play and maximum distances traveled from the natal burrow during the play interval …

Population Structure, Demographic History, And Environmental Niche Of The Sand Fly Disease Vector Lutzomyia Shannoni (Dyar) (Diptera: Psychodidae) In The U.S., Mexico, And Colombia, Matthew E. Wolkoff

Biology Theses

Lutzomyia shannoni (Dyar, 1929) (Diptera: Psychodidae) is the only known sand fly vector of vesicular stomatitis virus, a putative leishmaniasis vector, and also boasts the widest distribution of any sand fly in the New World. Research on Lu. shannoni in Central and South America has revealed genetically divergent subpopulations; however, tentative analysis of Lu. shannoni in the U.S. has failed to detect any significant population structure, even between specimens collected from highly disparate localities.

The present study used four molecular markers to more closely investigate the population structure of Lu. shannoni in the U.S., and assess the species’ relationships with …

Western Australian Sea Cucumber Resource - Harvest Strategy 2018-2023, Department Of Primary Industries And Regional Development

Fisheries management papers

This publication of harvest strategies is intended to make the decision-making considerations and processes for the management of specified aquatic resources publicly transparent and provide a basis for informed dialogue on management actions with resource users and other stakeholders.

Using Molecular Markers To Trace The Population History Of Volant Organisms At Differing Temporal Scales, Noah A. Burg

Dissertations, Theses, and Capstone Projects

Using molecular markers to test phylogenetic and phylogeographic hypotheses is critical for tracking the population origin of invasive, introduced species (Chapter 2, Chapter 4) and to identify the systematic relationships of disparate lineages at both shallow and deep evolutionary time scales (Chapters 3, Chapter 4). In this thesis, Sanger Sequencing was used to generate datasets based on fresh and preserved tissue from specimens collected in the field, as well as museum tissue vouchers granted from various institutions in the US and Europe. In combining these source materials, data were generated for three focal studies: 1) In the first research section …

Evaluating In Situ Grazing Patterns Of Lytechinus Variegatus And Their Effects On Seagrass Beds Of Thalassia Testudinum, Adrianna Parson

Master of Science in Integrative Biology Theses

The sea urchin Lytechinus variegatus is a known grazer of the seagrass Thalassia testudinum, and has been known to denude vast stands of seagrass beds at high densities. Outside of these denudation events, the effects of sea urchins on seagrass are poorly understood. This study examines the effects of L. variegatus on T. testudinum in situ, to understand how sea urchins are affecting seagrasses in situ. Results indicate that urchins were found in the offshore portion of the seagrass bed at densities up to 4 urchins/m². Changes in temperature and sediment size in the bay indicate …

Wildlife Use Of Vernal Pools In An Urbanizing Landscape With A Focus On Population Vitality Of Vernal Pool-Breeding Amphibians, Carly Eakin

Electronic Theses and Dissertations

Vernal pools in the northeastern United States provide essential habitat for pool-breeding amphibians and provide resources for other forest-dwelling wildlife. These pools and pool-breeding amphibians in particular are threatened by land conversion associated with urbanization and urban-associated factors. The responses of these amphibians and of birds and mammals using vernal pools to intermediate levels of urban development are largely unknown. I used field observations and lab experiments to study the amphibians, birds, and mammals associated with vernal pools along an urban development gradient in greater Bangor, Maine.

In Chapter 1, I examined bird and mammal use and assemblage composition at …

Body Size Downgrading Of Mammals Over The Late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne

School of Biological Sciences: Faculty Publications

Since the late Pleistocene, large-bodied mammals have been extirpated from much of Earth. Although all habitable continents once harbored giant mammals, the few remaining species are largely confined to Africa. This decline is coincident with the global expansion of hominins over the late Quaternary. Here, we quantify mammalian extinction selectivity, continental body size distributions, and taxonomic diversity over five time periods spanning the past 125,000 years and stretching approximately 200 years into the future. We demonstrate that size-selective extinction was already under way in the oldest interval and occurred on all continents, within all trophic modes, and across all time …

Testing Viability Of Oligonucleotide Primers On Microsatellite Markers Amplified By Polymerase Chain Reaction On Dermacentor Variabilis Samples From The Bulloch County Region Of Georgia, Usa, Danielle Souza

Honors College Theses

Dermacentor variabilis, more commonly known as the wood tick, or the American dog tick, can be found all over North America. D. variabilis is a common tick in Bulloch county, Georgia, USA, and little is known about the population structure of this population of the species. Microsatellite markers are able to locate sections of the genome and can aid in estimating relatedness among individuals in a population. Six different oligonucleotide primer pairs were published for D. variabilis, however, published and non-published works indicated that not all of those primer pairs were working equally well for PCR. This study is …

Can Omnivores Mediate The Effects Of Degradation?, Hannah Moore

Scholars Week

Omnivores feed at multiple trophic levels and have large effects on community structuring and stability. The magnitude and direction of such effects, whether omnivores stabilize or destabilize communities, remains unresolved. Shifts in omnivore diet and trophic position may be of particular importance to community stability in degraded habitats, where resources are sparse. For example, omnivores may reduce the severity and duration of community responses to degradationby dampening the effects of any disturbance-mediated trophic cascade. The relatively simple food webs of freshwater systems are ideal for studying trophic ecology, and in the western U.S., streams are heavily degraded by overgrazing, beaver …

The Evolutionary History Of Nebraska Deer Mice: Local Adaptation In The Face Of Strong Gene Flow, Susanne P Pfeifer, Stefan Laurent, Vitor C. Sousa, Catherine R. Linnen, Matthieu Foll, Laurent Excoffier, Hopi E. Hoekstra, Jeffrey D. Jensen

Biology Faculty Publications

The interplay of gene flow, genetic drift, and local selective pressure is a dynamic process that has been well studied from a theoretical perspective over the last century. Wright and Haldane laid the foundation for expectations under an island-continent model, demonstrating that an island-specific beneficial allele may be maintained locally if the selection coefficient is larger than the rate of migration of the ancestral allele from the continent. Subsequent extensions of this model have provided considerably more insight. Yet, connecting theoretical results with empirical data has proven challenging, owing to a lack of information on the relationship between genotype, phenotype, …

Evolution Of Alu Elements In The Saimiri And Papio Lineages Of Primates, Jasmine Nicole Brown Baker

LSU Doctoral Dissertations

Alu elements are approximately 300 base pair (bp) primate specific non- autonomous retrotransposons. Alu elements, a short interspersed element (SINE), account for high copy numbers in all primate genomes. Numerous Alu element subfamilies have undergone varying degrees of activity and amplification within primates. Identification of these subfamilies has proved to be very informative in elucidating phylogenies and as phylogenomic markers. Squirrel monkeys, genus Saimiri, are one of the most well-known neotropical primates and the second most commonly used laboratory monkey. Squirrel monkey species diverged approximately 1.5 million years ago and are native to South America. Despite being well-known, there …

P-46 A Periodic Matrix Model Of Seabird Behavior And Population Dynamics, Mykhaylo M. Malakhov, Benjamin Macdonald, Shandelle M. Henson, J. M. Cushing

Honors Scholars & Undergraduate Research Poster Symposium Programs

Rising sea surface temperatures (SSTs) in the Pacific Northwest lead to food resource reductions for surface-feeding seabirds, and have been correlated with several marked behavioral changes. Namely, higher SSTs are associated with increased egg cannibalism and egg-laying synchrony in the colony. We study the long-term effects of climate change on population dynamics and survival by considering a simplified, cross-season model that incorporates both of these behaviors in addition to density-dependent and environmental effects. We show that cannibalism can lead to backward bifurcations and strong Allee effects, allowing the population to survive at lower resource levels than would be possible otherwise.

A Characterization Of West Virginia Coyotes (Canis Latrans) Utilizing Skull Morphology, Katharina E. Scholer

Theses, Dissertations and Capstones

Coyotes (Canis latrans) are now found throughout North and Central America, but before European colonization were restricted to west of the Mississippi. Migration occurred in two major paths to the East; north over the Great Lakes (through Canada) and south below the Great Lakes. The location of these routes is significant because those migrating north interbred with the wolves that reside there. These hybrid animals are larger and behaviorally different from their western counterparts. It is possible to differentiate these hybrids morphologically and genetically. Hybrids are known to be located in Maine, New York, and Pennsylvania, but the interest of …