Biology Commons^™

Complex Dynamics Of Coral Gene Expression Responses To Low Ph Across Species, Veronica Z. Radice, Ana Martinez, Adina Paytan, Donald C. Potts, Daniel J. Barshis

Biological Sciences Faculty Publications

Coral capacity to tolerate low pH affects coral community composition and, ultimately, reef ecosystem function. Low pH submarine discharges (‘Ojo’; Yucatán, México) represent a natural laboratory to study plasticity and acclimatization to low pH in relation to ocean acidification. A previous >2‐year coral transplant experiment to ambient and low pH common garden sites revealed differential survivorship across species and sites, providing a framework to compare mechanistic responses to differential pH exposures. Here, we examined gene expression responses of transplants of three species of reef‐building corals (Porites astreoides, Porites porites and Siderastrea siderea) and their algal endosymbiont communities …

Deconstructing The Mangrove Carbon Cycle: Gains, Transformation, And Losses, M. F. Adame, N. Cormier, P. Taillardat, N. Iram, A. Rovai, T. M. Sloey, E. S. Yando, J. F. Blanco-Libreros, M. Arnaud, T. Jennerjahn, C. E. Lovelock, D. Friess, G. M. S. Reithmaier, C. A. Buelow, S. M. Muhammad-Nor, R. R. Twilley, R. A. Ribeiro

Biological Sciences Faculty Publications

Mangroves are one of the most carbon-dense forests on the Earth and have been highlighted as key ecosystems for climate change mitigation and adaptation. Hundreds of studies have investigated how mangroves fix, transform, store, and export carbon. Here, we review and synthesize the previously known and emerging carbon pathways in mangroves, including gains (woody biomass accumulation, deadwood accumulation, soil carbon sequestration, root and litterfall production), transformations (food web transfer through herbivory, decomposition), and losses (respiration as CO₂ and CH₄, litterfall export, particulate and dissolved carbon export). We then review the technologies available to measure carbon fluxes in …

Season Influences Interspecific Responses Of Canopy-Forming Kelps To Future Warming And Acidification At High Latitude, Lauren E. Bell, Lily Westphal, Evan O' Brien, Jason A. Toy, Haleigh Damron, Kristy J. Kroeker

Biological Sciences Faculty Publications

Variability in primary producers' responses to environmental change may buffer higher trophic levels against shifts in basal resource composition. Then again, in instances where there is a lack of functional redundancy because consumers rely on a few species to meet their energetic requirements at specific times of the year, altered community production dynamics may significantly impact food web resilience. In high-latitude kelp forests, a complementary annual phenology of seaweed production supports coastal marine consumers' metabolic needs across large seasonal variations in their environment. Yet, marine consumers in these systems may face significant metabolic stress under the pronounced low pH conditions …

Seasonal Habitat Preference And Foraging Behaviour Of Post-Moult Weddell Seals In The Western Ross Sea, Kimberly T. Goetz, Michael S. Dinniman, Luis A. Hückstädt, Patrick W. Robinson, Michelle R. Shero, Jennifer M. Burns, Eileen E. Hofmann, Sharon E. Stammerjohn, Elliott L. Hazen, David G. Ainley, Daniel P. Costa

CCPO Publications

Weddell seals (Leptonychotes weddellii) are important predators in the Southern Ocean and are among the best-studied pinnipeds on Earth, yet much still needs to be learned about their year-round movements and foraging behaviour. Using biologgers, we tagged 62 post-moult Weddell seals in McMurdo Sound and vicinity between 2010 and 2012. Generalized additive mixed models were used to (i) explain and predict the probability of seal presence and foraging behaviour from eight environmental variables, and (ii) examine foraging behaviour in relation to dive metrics. Foraging probability was highest in winter and lowest in summer, and foraging occurred mostly in …

Use Of Amino Acid Isotope Analysis To Investigate Capital Versus Income Breeding Strategies In Migratory Avian Species, Nico Lübcker, John P. Whiteman, Oliver N. Shipley, Keith A. Hobson, Seth D. Newsome

Biological Sciences Faculty Publications

1. Income and capital breeding represent opposing ends of a continuum of reproductive strategies. Quantifying nutrient allocation to reproduction is challenging, but recent advances in compound-specific stable isotope analysis hold promise for tracing the source of individual compounds allocated to reproduction.

2. Here, we describe a novel approach of using measured carbon (δ13C) and nitrogen (δ15N) isotope values of individual amino acids (AAs) in pectoral muscle of egg-laying females and egg yolk as a useful tool to quantify the reliance on income versus capital breeding in migrating species. We used white-fronted (Anser albifrons frontalis), lesser snow (A. …

An Integrative Salt Marsh Conceptual Framework For Global Comparisons, Erik S. Yando, Scott F. Jones, W. Ryan James, Denise D. Colombano, Diana I. Montemayor, Stefanie Nolte, Jacqueline L. Raw, Shelby L. Ziegler, Luzhen Chen, Daniele Daffonchio, Marco Fusi, Kerrylee Rogers, Liudmila Sergienko

Biological Sciences Faculty Publications

Salt marshes occur globally across climatic and coastal settings, providing key linkages between terrestrial and marine ecosystems. However, salt marsh science lacks a unifying conceptual framework; consequently, historically well-studied locations have been used as normative benchmarks. To allow for more effective comparisons across the diversity of salt marshes, we developed an integrative salt marsh conceptual framework. We review ecosystem-relevant drivers from global to local spatial scales, integrate these multi-scale settings into a framework, and provide guidance on applying the framework using specific variables on 11 global examples. Overall, this framework allows for appropriate comparison of study sites by accounting for …

The Coral Bleaching Automated Stress System (Cbass): A Low-Cost, Portable System For Standardized Empirical Assessments Of Coral Thermal Limits, Nicholas R. Evensen, Katherine E. Parker, Thomas A. Oliver, Stephen R. Palumbi, Cheryl A. Logan, James S. Ryan, Courtney N. Klepac, Gabriela Perna, Mark E. Warner, Christian R. Voolstra, Daniel J. Barshis

Biological Sciences Faculty Publications

Ocean warming is increasingly affecting marine ecosystems across the globe. Reef-building corals are particularly affected by warming, with mass bleaching events increasing in frequency and leading to widespread coral mortality. Yet, some corals can resist or recover from bleaching better than others. Such variability in thermal resilience could be critical to reef persistence; however, the scientific community lacks standardized diagnostic approaches to rapidly and comparatively assess coral thermal vulnerability prior to bleaching events. We present the Coral Bleaching Automated Stress System (CBASS) as a low-cost, open-source, field-portable experimental system for rapid empirical assessment of coral thermal thresholds using standardized temperature …

The Practice And Promise Of Temporal Genomics For Measuring Evolutionary Responses To Global Change, René D. Clark, Katrina A. Catalano, Kyra S. Fitz, Eric Garcia, Kyle E. Jaynes, Brendan N. Reid, Allyson Sawkins, Anthony A. Snead, John C. Whalen, Malin L. Pinsky

Biological Sciences Faculty Publications

Understanding the evolutionary consequences of anthropogenic change is imperative for estimating long-term species resilience. While contemporary genomic data can provide us with important insights into recent demographic histories, investigating past change using present genomic data alone has limitations. In comparison, temporal genomics studies, defined herein as those that incorporate time series genomic data, utilize museum collections and repeated field sampling to directly examine evolutionary change. As temporal genomics is applied to more systems, species and questions, best practices can be helpful guides to make the most efficient use of limited resources. Here, we conduct a systematic literature review to synthesize …

Strong, Recent Selective Sweeps Reshape Genetic Diversity In Freshwater Bivalve Megalonaias Nervosa, Rebekah L. Rogers, Stephanie L. Grizzard, Jeffrey T. Garner

Biological Sciences Faculty Publications

Freshwater Unionid bivalves have recently faced ecological upheaval through pollution, barriers to dispersal, harvesting, and changes in fish–host prevalence. Currently, over 70% of species in North America are threatened, endangered or extinct. To characterize the genetic response to recent selective pressures, we collected population genetic data for one successful bivalve species, Megalonaias nervosa. We identify megabase-sized regions that are nearly monomorphic across the population, signals of strong, recent selection reshaping diversity across 73 Mb total. These signatures of selection are greater than is commonly seen in population genetic models. We observe 102 duplicate genes with high dN/d …

Adaptive Divergence, Neutral Panmixia, And Algal Symbiont Population Structure In The Temperate Coral Astrangia Poculata Along The Mid-Atlantic United States, Hannah E. Aichelman, Daniel J. Barshis

Biological Sciences Faculty Publications

Astrangia poculata is a temperate scleractinian coral that exists in facultative symbiosis with the dinoflagellate alga Breviolum psygmophilum across a range spanning the Gulf of Mexico to Cape Cod, Massachusetts. Our previous work on metabolic thermal performance of Virginia (VA) and Rhode Island (RI) populations of A. poculata revealed physiological signatures of cold (RI) and warm (VA) adaptation of these populations to their respective local thermal environments. Here, we used whole-transcriptome sequencing (mRNA-Seq) to evaluate genetic differences and identify potential loci involved in the adaptive signature of VA and RI populations. Sequencing data from 40 A. poculata individuals, including 10 …

Apparent Resilience To Fire Of Native Bee (Hymenoptera: Apoidea) Communities From Upland Longleaf Pine Forests In Louisiana And Mississippi, Sara A. Simmons, Janice L. Bossart

Biological Sciences Faculty Publications

Controlled burning is an essential tool for restoration and management of Pinus palustris (Longleaf Pine) habitats, yet effects of controlled burning on insect species, including pollinators, are rarely considered in conservation planning. We used blue vane traps to sample native bees (Hymenoptera: Apoidea) at recently burned and unburned sites in 2 Longleaf Pine upland forests in Mississippi and Louisiana. Our objective was to quantify short-term effects of controlled burns given fire-return intervals of 1-2 years are now regularly employed to manage Longleaf Pine woodlands. We sampled during 2016 and 2017 and collected 1777 native bees, representing 43 species. Recent fire …

The Natural History Of The Marsh Rice Rat, Oryzomys Palustris, In Eastern Virginia, Robert K. Rose

Biological Sciences Faculty Publications

The marsh rice rat, Oryzomys palustris, is a common rodent in tidal marshes of eastern Virginia, including those on the barrier islands. It also is present in grassy old fields in upland habitats in the coastal plain and parts of the piedmont of Virginia. This report summarizes what has been learned in recent decades about the population biology of this species in Virginia, including aspects of behavior, density, diet, distribution, genetics, habitats, mammal associates, and reproduction.

Evolutionary Determinism And Convergence Associated With Water Column Transitions In Marine Fishes, Melissa Rincon-Sandoval, Emmanuelle Duarte-Ribeiro, Aaron M. Davis, Aintzane Santaquiteria, Lily C. Hughes, Carole C. Baldwin, Luisángely Soto-Torres, Arturo Acero P., H.J. Walker Jr, Kent E. Carpenter, Marcus Sheaves, Guillermo Orti, Dahiana Arcila, Ricardo Betancur-R.

Biological Sciences Faculty Publications

Repeatable, convergent outcomes are prima facie evidence for determinism in evolutionary processes. Among fishes, well-known examples include microevolutionary habitat transitions into the water column, where freshwater populations (e.g., sticklebacks, cichlids, and whitefishes) recurrently diverge toward slender-bodied pelagic forms and deep-bodied benthic forms. However, the consequences of such processes at deeper macroevolutionary scales in the marine environment are less clear. We applied a phylogenomics-based integrative, comparative approach to test hypotheses about the scope and strength of convergence in a marine fish clade with a worldwide distribution (snappers and fusiliers, family Lutjanidae) featuring multiple water-column transitions over the past 45 million years. …

Wandering Woodpeckers: Foray Behavior In A Social Bird, Sahas Barve, Natasha D. G. Hagemeyer, Russell E. Winter, Samuel D. Chamberlain, Walter D. Koenig, David W. Winkler, Eric L. Walters

Biological Sciences Faculty Publications

In many cooperatively breeding taxa, nonbreeding subordinates, or helpers, use extra-territorial forays to discover dispersal opportunities. Such forays are considered energetically costly and foraying birds face aggression from conspecific members of the territories they visit. In contrast, breeders in cooperatively breeding taxa are expected to foray seldomly. We used novel tracking technologies to follow 62 acorn woodpeckers (Melanerpes formicivorus), a cooperatively breeding bird, to study extra-territorial foray behavior. Both helpers and breeders engaged in extra-territorial forays routinely and often several times per day. Helpers forayed earlier in the day and invested more time when foraying to high-quality territories. …

Natural History Of The Eastern Harvest Mouse In Southeastern Virginia, Robert K. Rose

Biological Sciences Faculty Publications

The Eastern Harvest Mouse, Reithrodontomys humulis, has been studied extensively in southeastern Virginia since 1979, using a combination of live and pitfall trapping methods. This smallest rodent of eastern North America also is one of most versatile, occupying a range of habitats in southeastern Virginia from old fields in different stages of succession, brushy edges, and forests of different types. As with other species of Reithrodontomys, R. humulis often is associated with the Hispid Cotton Rat, Sigmodon hispidus, with both reaching modest densities in old fields. Two capture-mark-release studies of small mammal communities in southern Chesapeake lasting …

Demographic Response Of The Gambian Gerbil To Seasonal Changes In Savannah Fallow Fields, Safianu Rabiu, Robert K. Rose

Biological Sciences Faculty Publications

The Savannah gerbil, Gerbilliscus gambianus (Muridae: Gerbillinae) is important to the ecological relations of the dry grassland ecosystem of West Africa, as well as, being a zoonotic agent of human diseases and po-tential crop pest. We examined the impact of seasonal changes on the population dynamics of G. gambianus in northern Nigeria, by completing population estimates using capture–mark–recapture (CMR) and indirect population density indices (PDI) methods. The latter included fecal pellet counts and limited spotlightening. During 1990–1992 we collected both CMR and PDI data, and established their relationship by regression, thus calibrating the PDI values to CMR estimator. We also …

Editorial: Advances In The Biology And Conservation Of Marine Turtles, Sara M. Maxwell, Annette C. Broderick, Peter H. Dutton, Sabrina Fossette-Halot, Mariana M.P.B. Fuentes, Richard D. Reina

Biological Sciences Faculty Publications

(First Paragraph) Marine turtles have been the subject of research over many decades, inspired by their unique life history and necessitated by their declining populations from a suite of human impacts including direct harvest, bycatch in marine fisheries, pollution, and climate change. Despite this, much about marine turtle biology has remained a mystery (Godley et al., 2008; Rees et al., 2016; Wildermann et al., 2018), but the rate of scientific discovery is increasing rapidly. As research techniques and conservation practices expand, the marine turtle research community has kept abreast of these developments and their application to marine turtles. In this …

Adiposity And Fat Metabolism During Combined Fasting And Lactation In Elephant Seals, Melinda Fowler, Cory Champagne, Daniel Croker

Biological Sciences Faculty Publications

Animals that fast depend on mobilizing lipid stores to power metabolism. Northern elephant seals (Mirounga angustirostris) incorporate extended fasting into several life-history stages: development, molting, breeding and lactation. The physiological processes enabling fasting and lactation are important in the context of the ecology and life history of elephant seals. The rare combination of fasting and lactation depends on the efficient mobilization of lipid from adipose stores and its direction into milk production. The mother elephant seal must ration her finite body stores to power maintenance metabolism, as well as to produce large quantities of lipid and protein rich …

Modelling The Effects Of Habitat And Hosts On Tick Invasions, Robyn M. Nadolny, Holly D. Gaff

Biological Sciences Faculty Publications

Many tick species are invading new areas because of anthropogenic changes in the landscape, shifting climatic variables and increasing populations of suitable host species and tick habitat. However, the relative influences of habitat and hosts in tick dispersal and tick population establishment remain in question. A spatially explicit agent-based model was developed to explore the spatio-temporal dynamics of a generic tick population in the years immediately following the introduction of ticks into a novel environment. The general model was then adapted to investigate a case study of two recent tick species invasions into the Mid-Atlantic United States. The recent simultaneous …

Natural History Of The Southern Bog Lemming In Southeastern Virginia, Robert K. Rose

Biological Sciences Faculty Publications

The isolated subspecies of Southern Bog Lemming of southeastern Virginia, Synaptomys cooperi helaletes, has been studied extensively since its "rediscovery" in the Great Dismal Swamp in 1980. Multiple studies using pitfall traps, starting in the Great Dismal Swamp National Wildlife Refuge and then extending elsewhere in southeastern Virginia and adjacent northeastern North Carolina, have revealed lemmings to be much more widespread and often more common than previously believed, with their presence now confirmed as far west as Surry and Sussex counties, about 30 km east of Petersburg, Virginia. When present, lemmings often are among the most numerous members of …

The Small Mammals Of Southeastern Virginia As Revealed By Pitfall Trapping, Robert K. Rose

Biological Sciences Faculty Publications

Pitfall trapping is a poor method to catch small mammals but the only way to catch and study the Southeastern Shrew (Sorex longirostris), the primary mammal of interest in the field studies reported here. While learning much about its distribution and abundance, still more was learned about the other small mammals present in forests and fields of eastern Virginia. A total of 15 species was captured at 19 locations during the 1990-2013 period, including five shrews, two moles, and eight rodents, representing all but one of the common small mammals in eastern Virginia.

Sex-Obsessed Or Just Sociable? Non-Copulatory Displays In The Hamerkop, Natasha Hagemeyer

Biological Sciences Faculty Publications

[First Paragraph] Non‐copulatory sexual behavior is surprisingly common among animals ranging from insects to vertebrates. Although sometimes considered unusual or aberrant within a species, in some taxa non‐copulatory sexual behavior is widespread, and may even represent the majority of sexual behavior. Such behavior can also happen in many other contexts, including accidental contact, courtship, social bonding, and social structuring (Bagemihl 1999).

Draft Genome Sequences For Seven Streptococcus Parauberis Isolates From Wild Fish In The Chesapeake Bay, Ashley Haines, Emily Nebergall, Elvira Besong, Kimaya Council, Onaysha Lambert, David Gauthier

Biological Sciences Faculty Publications

Streptococcus parauberis is a pathogen of cattle and fish, closely related Streptococcus uberis and Streptococcus iniae. We report the genomes of seven S. parauberis strains recovered from striped bass (Morone saxatilis) in the Chesapeake Bay. The availability of these genomes will allow comparative genomic analysis of Chesapeake Bay S. parauberis strains versus S. parauberis cultured from other animal hosts and geographic regions.

Invasion Of Two Tick-Borne Diseases Across New England: Harnessing Human Surveillance Data To Capture Underlying Ecological Invasion Processes, Katharine S. Walter, Kim M. Pepin, Colleen T. Webb, Holly D. Gaff, Peter J. Krause, Virginia E. Pitzer, Maria A. Diuk-Wasser

Biological Sciences Faculty Publications

Modelling the spatial spread of vector-borne zoonotic pathogens maintained in enzootic transmission cycles remains a major challenge. The best available spatio-temporal data on pathogen spread often take the form of human disease surveillance data. By applying a classic ecological approach-occupancy modelling-to an epidemiological question of disease spread, we used surveillance data to examine the latent ecological invasion of tick-borne pathogens. Over the last half-century, previously undescribed tick-borne pathogens including the agents of Lyme disease and human babesiosis have rapidly spread across the northeast United States. Despite their epidemiological importance, the mechanisms of tick-borne pathogen invasion and drivers underlying the distinct …

Diet And Foraging Behaviors Of Timber Rattlesnakes, Crotalus Horridus, In Eastern Virginia, Scott M. Goetz, Christopher E. Petersen, Robert K. Rose, John D. Kleopfer, Alan H. Savitzky

Biological Sciences Faculty Publications

During a 17-yr telemetry study, we examined the diet and ambush behavior of a population of Crotalus horridus in southeastern Virginia. Forty dietary items were identified from 37 fecal samples. We documented 722 instances of snakes in an ambush posture, 61 of which were in a vertical-tree posture, as if hunting arboreal prey at the base of a tree. The most common prey items were Eastern Gray Squirrels (Sciurus carolinensis), which accounted for 45 of all dietary items and represented an estimated 78 of total biomass consumed by C. horridus. Prey was not consumed in proportion to availability, …

A Novel Method Of Microsatellite Genotyping-By-Sequencing Using Individual Combinatorial Barcoding, Salla Vartia, Jose L. Villanueva-Cañas, John Finarelli, Edward D. Farrell, Patrick C. Collins, Graham M. Hughes, Jeanette E.L. Carlson, David T. Gauthier, Philip Mcginnity, Thomas F. Cross, Richard D. Fitzgerald, Luca Mirimin, Fiona Crispie, Paul D. Cotter, Jens Carlsson

Biological Sciences Faculty Publications

This study examines the potential of next-generation sequencing based 'genotyping-by-sequencing' (GBS) of microsatellite loci for rapid and cost-effective genotyping in large-scale population genetic studies. The recovery of individual genotypes from large sequence pools was achieved by PCR-incorporated combinatorial barcoding using universal primers. Three experimental conditions were employed to explore the possibility of using this approach with existing and novel multiplex marker panels and weighted amplicon mixture. The GBS approach was validated against microsatellite data generated by capillary electrophoresis. GBS allows access to the underlying nucleotide sequences that can reveal homoplasy, even in large datasets and facilitates cross laboratory transfer. GBS …

Temporal Variability And Cooperative Breeding: Testing The Bet-Hedging Hypothesis In The Acorn Woodpecker, Walter D. Koenig, Eric L. Walters

Biological Sciences Faculty Publications

Cooperative breeding is generally considered an adaptation to ecological constraints on dispersal and independent breeding, usually due to limited breeding opportunities. Although benefits of cooperative breeding are typically thought of in terms of increased mean reproductive success, it has recently been proposed that this phenomenonmay be a bet-hedging strategy that reduces variance in reproductive success (fecundity variance) inpopulations living inhighly variable environments. We tested this hypothesis using long-term data on the polygynandrous acorn woodpecker (Melanerpes formicivorus). In general, fecundity variance decreased with increasing sociality, at least when controlling for annual variation in ecological conditions. Nonetheless, decreased fecundity variance …

Wild Bees Preferentially Visit Rudbeckia Flower Heads With Exaggerated Ultraviolet Absorbing Floral Guides, Lisa Horth, Laura Campbell, Rebecca Bray

Biological Sciences Faculty Publications

Here, we report on the results of an experimental study that assessed the visitation frequency of wild bees to conspecific flowers with different sized floral guides. UV absorbent floral guides are ubiquitous in Angiosperms, yet surprisingly little is known about conspecific variation in these guides and very few studies have evaluated pollinator response to UV guide manipulation. This is true despite our rich understanding about learning and color preferences in bees. Historical dogma indicates that flower color serves as an important long-range visual signal allowing pollinators to detect the flowers, while floral guides function as close-range signals that direct pollinators …

Modelling Cholera In Periodic Environments, Drew Posny, Jin Wang

Mathematics & Statistics Faculty Publications

We propose a deterministic compartmental model for cholera dynamics in periodic environments. The model incorporates seasonal variation into a general formulation for the incidence (or, force of infection) and the pathogen concentration. The basic reproduction number of the periodic model is derived, based on which a careful analysis is conducted on the epidemic and endemic dynamics of cholera. Several specific examples are presented to demonstrate this general model, and numerical simulation results are used to validate the analytical prediction.

The Likelihood Of Extinction Of Iconic And Dominant Herbivores And Detritivores Of Coral Reefs: The Parrotfishes And Surgeonfishes, Mia T. Comeros-Raynal, John H. Choat, Beth A. Polidoro, Kendall D. Clements, Rene Abesamis, Matthew T. Craig, Muhammad E. Lazuardi, Jennifer Mcilwain, Andreas Muljadi, Robert F. Myers, Cleto L. Nanola Jr., Shinta Pardede, Luiz A. Rocha, Barry Russell, Jonnell C. Sanciangco, Brian Stockwell, Heather Harwell, Kent E. Carpenter

Biological Sciences Faculty Publications

Parrotfishes and surgeonfishes perform important functional roles in the dynamics of coral reef systems. This is a consequence of their varied feeding behaviors ranging from targeted consumption of living plant material (primarily surgeonfishes) to feeding on detrital aggregates that are either scraped from the reef surface or excavated from the deeper reef substratum (primarily parrotfishes). Increased fishing pressure and widespread habitat destruction have led to population declines for several species of these two groups. Species-specific data on global distribution, population status, life history characteristics, and major threats were compiled for each of the 179 known species of parrotfishes and surgeonfishes …