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Full-Text Articles in Bioinformatics

Microbiome And Virome Analysis In Early Life, Lakshmi Priyadarshini Nov 2023

Microbiome And Virome Analysis In Early Life, Lakshmi Priyadarshini

ORBioM (Open Research BioSciences Meeting)

A wide variety of microorganisms, including bifidobacteria, are known to colonise the human gastrointestinal tract. Bifidobacteria are beneficial bacteria known to be particularly prevalent and abundant in the gut of healthy and breast-fed infants. Together with bacteria, bacteriophages can be vertically transmitted from mother to newborn during vaginal delivery and they are believed to play a role in influencing bacterial levels and microbiota composition in early in life. While there is a significant amount of information on early bacterial colonisers in the infant gut, there is currently very limited knowledge of diversity and prevalence of gut bacteriophages and their impact …


Comparative Analysis Of Rhizosphere And Endosphere Microbiome Of Different Blueberry Species (Vaccinium Sp.), Niladri Bhowmik May 2023

Comparative Analysis Of Rhizosphere And Endosphere Microbiome Of Different Blueberry Species (Vaccinium Sp.), Niladri Bhowmik

Master's Theses

Blueberries are an important agricultural commodity in all over the United States. Due to its health benefits, there is a huge demand globally, thus expanding the industry. Breeding programs are essential to maintain such industries. Challenges that play a role in contemporary breeding programs are various biotic and abiotic stress factors. Studies have shown that microorganisms are recruited by plants to alleviate them during stressful conditions. Though blueberries have been cultivated for about 100 years, how the microbiome has been affected due to this is poorly understood. We hypothesized that interspecific crosses and artificial selection have significantly changed the microbiome …


Ecology, Evolution, And Gene Transfer Between Diatoms And Bacteria, Cory B. Gargas May 2023

Ecology, Evolution, And Gene Transfer Between Diatoms And Bacteria, Cory B. Gargas

Graduate Theses and Dissertations

Although photosynthetic macro-eukaryotes (i.e., plants) make up the majority of organic biomass on earth, bacteria are the second largest taxonomic group, by biomass. Bacteria are ubiquitous in our environment, living on, and within, man-made surfaces, natural environments, and eukaryotes themselves. The relationship between bacteria and eukaryotes has existed from the very beginning of eukaryotic life in the form of bacterial endosymbioses that resulted in mitochondria and plastids. Other eukaryote–bacteria relationships have evolved since then, ranging from the beneficial (e.g., mutualistic) to harmful (e.g., parasitic or pathogenic). Understanding these eukaryote–bacteria relationships is key to understanding both the evolution of important ecosystem …


Investigating The Potential Role Of Termites As Pathogen Vectors In The Decline Of Ironwood Trees (Casuarina Equisetifolia) In Guam, Garima Setia Jan 2023

Investigating The Potential Role Of Termites As Pathogen Vectors In The Decline Of Ironwood Trees (Casuarina Equisetifolia) In Guam, Garima Setia

LSU Master's Theses

Termites have been found associated with the decline of Casuarina equisetifolia (ironwood), an important agro-forestry species in Guam. While the ironwood tree decline (IWTD) was first reported in 2002, its association with termites as well as with bacteria Ralstonia solanacearum and Klebsiella species (K. oxytoca and K. variicola) was determined in 2010 and 2012 respectively. In 2019, the termite species attacking the ironwood trees were identified as Nasutitermes takasagoensis, Coptotermes gestroi, and Microcerotermes crassus. However, the role of termites in IWTD is not known. Since termites are repositories of bacteria and consume wood, termite foragers might …