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Full-Text Articles in Bioinformatics
Global Gene Expression Profiling Of Healthy Human Brain And Its Application In Studying Neurological Disorders, Simarjeet K. Negi
Global Gene Expression Profiling Of Healthy Human Brain And Its Application In Studying Neurological Disorders, Simarjeet K. Negi
Theses & Dissertations
The human brain is the most complex structure known to mankind and one of the greatest challenges in modern biology is to understand how it is built and organized. The power of the brain arises from its variety of cells and structures, and ultimately where and when different genes are switched on and off throughout the brain tissue. In other words, brain function depends on the precise regulation of gene expression in its sub-anatomical structures. But, our understanding of the complexity and dynamics of the transcriptome of the human brain is still incomplete. To fill in the need, we designed …
A Framework For The Statistical Analysis Of Mass Spectrometry Imaging Experiments, Kyle Bemis
A Framework For The Statistical Analysis Of Mass Spectrometry Imaging Experiments, Kyle Bemis
Open Access Dissertations
Mass spectrometry (MS) imaging is a powerful investigation technique for a wide range of biological applications such as molecular histology of tissue, whole body sections, and bacterial films , and biomedical applications such as cancer diagnosis. MS imaging visualizes the spatial distribution of molecular ions in a sample by repeatedly collecting mass spectra across its surface, resulting in complex, high-dimensional imaging datasets. Two of the primary goals of statistical analysis of MS imaging experiments are classification (for supervised experiments), i.e. assigning pixels to pre-defined classes based on their spectral profiles, and segmentation (for unsupervised experiments), i.e. assigning pixels to newly …
Near Infrared Spectroscopy For Estimating The Age Of Malaria Transmitting Mosquitoes, Masabho Peter Milali
Near Infrared Spectroscopy For Estimating The Age Of Malaria Transmitting Mosquitoes, Masabho Peter Milali
Master's Theses (2009 -)
We explore the use of near infrared spectrometry to classifying the age of a wild malaria transmitting mosquito. In Chapter Two, using a different set of lab-reared mosquitoes, we replicate the Mayagaya et al. study of the accuracy of near-infrared spectrometry (NIRS) to estimate the age of lab-reared mosquitoes, reproducing the published accuracy. Our results strengthen the Mayagaya et. al study and increase confidence in using NIRS to estimate age classes of mosquitoes. In the field, we wish to classify the ages of wild, not lab-reared mosquitoes, but the necessary training data from wild mosquitoes is difficult to find. Applying …
A Computational Framework For Learning From Complex Data: Formulations, Algorithms, And Applications, Wenlu Zhang
A Computational Framework For Learning From Complex Data: Formulations, Algorithms, And Applications, Wenlu Zhang
Computer Science Theses & Dissertations
Many real-world processes are dynamically changing over time. As a consequence, the observed complex data generated by these processes also evolve smoothly. For example, in computational biology, the expression data matrices are evolving, since gene expression controls are deployed sequentially during development in many biological processes. Investigations into the spatial and temporal gene expression dynamics are essential for understanding the regulatory biology governing development. In this dissertation, I mainly focus on two types of complex data: genome-wide spatial gene expression patterns in the model organism fruit fly and Allen Brain Atlas mouse brain data. I provide a framework to explore …