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Full-Text Articles in Bioinformatics
Exploring The Coffee Genome: A Comprehensive Analysis Of The Plant-Specific Dof Transcription Factor Gene Family, Humera Amin, Shumaila Dastgir, Numan Ali, Muhammad Shafiq, Muhammad Haseeb, Syed Agha Armaghan Asad Abbas Naqvi, Laiba Sharif, Syeda Shehar Bano Rizvi, Sohaib Ahmad, Farooq Ahmad
Exploring The Coffee Genome: A Comprehensive Analysis Of The Plant-Specific Dof Transcription Factor Gene Family, Humera Amin, Shumaila Dastgir, Numan Ali, Muhammad Shafiq, Muhammad Haseeb, Syed Agha Armaghan Asad Abbas Naqvi, Laiba Sharif, Syeda Shehar Bano Rizvi, Sohaib Ahmad, Farooq Ahmad
Journal of Bioresource Management
Dof (DNA binding with one finger) proteins constitute highly ubiquitous transcription factor gene families that are found across all plant species, playing crucial role in fruit ripening, organ development, and other activities. A comprehensive genome-wide analysis of the coffee genome uncovered 49 CaDof genes, which were described in terms of their gene structures, phylogenetic relationships, subcellular localization, gene duplication, and expression in various plant organs. In Coffea arabica, segmental duplication outnumbered tandem duplication. Expressed sequence tags were used to determine the expression of specific organs in CaDof genes. Most genes showed high expression in fruits at various stages, in …
Comparative Mito-Genomic Analysis Of Different Species Of Genus Canis By Using Different Bioinformatics Tools, Ume Rumman, Ghulam Sarwar, Safia Janjua, Fida Muhammad Khan, Fakhra Nazir
Comparative Mito-Genomic Analysis Of Different Species Of Genus Canis By Using Different Bioinformatics Tools, Ume Rumman, Ghulam Sarwar, Safia Janjua, Fida Muhammad Khan, Fakhra Nazir
Journal of Bioresource Management
In the current study, the mitochondrial genes sequence for COI, Cyt b and 16s rRNA of seven species found in different parts of the world were retrieved from NCBI Gene Bank while, PCR products of COI, Cyt b and 16s rRNA genes obtained from C. lupus and C.aureus present in Pakistan were sequenced and aligned for comparison. The phylogenetic analysis of mitochondrial COI, Cyt b and 16s rRNA genes showed almost the same results for the extant species of genus Canis. 16s rRNA revealed C. latrans, C. lycaon and C. simensis showed close phylogenetic relation with each other. …