Biodiversity Commons^™

Dna Barcoding Enhances Large-Scale Biodiversity Initiatives For Deep-Pelagic Crustaceans Within The Gulf Of Mexico And Adjacent Waters, Carlos Varela

FIU Electronic Theses and Dissertations

In this dissertation I investigate the biodiversity of marine deep-water crustaceans of the Gulf of Mexico and adjacent waters, focusing on pelagic crustaceans. Taxonomic and molecular techniques were utilized to document adult and larval crustacean specimens to better under their taxonomy, life history, evolutionary relationships and cryptic biodiversity. The use of molecular techniques to study organisms from habitats with limited accessibility provides tremendous potential. With prevalent anthropogenic threats and the delicate nature of deep-water habitats, the need to improve our understanding of these systems is clear. Molecular techniques can act as a fundamental tool to complement traditional taxonomy. The application …

Reconstructing Cyclical Browning In A Subtropical Lake From Diatoms, Meredith Emery

FIU Electronic Theses and Dissertations

Lakes are browning globally from increased inputs of colored dissolved organic carbon (cDOC) driven by climate and land-use change. Browning changes lake ecosystems, especially through reductions in water transparency. I used long-term limnological and plankton records and upper surface sediment diatom assemblages to infer a ~1600-year history of browning from diatom assemblages in a 166 cm core from a subtropical, oligotrophic lake known to experience cyclical browning related to climate oscillations. Diatom assemblages were strongly regulated by cDOC-driven transparency fluctuations in a 14-year plankton dataset (modern model, R² = 0.62) and in the upper 35 cm of sediments corresponding …

Invasion Genetics Of The Non-Native Geckos Phelsuma Grandis Gray 1870 And Gekko Gecko (Linnaeus 1758) In Southern Florida, Usa, Thomas William Fieldsend

FIU Electronic Theses and Dissertations

Biological invasions cause tremendous damage to ecosystems, economies, and human livelihoods worldwide. Florida is home to more established non-native species of reptiles and amphibians than anywhere else on Earth, many of which cause substantial harm to native biodiversity and human well-being. The relatively new discipline of invasion genetics promises to significantly improve the understanding, prediction, prevention, and management of biological invasions. The purpose of this dissertation is to utilize invasion genetics techniques to further understanding of the patterns and processes of biological invasions, especially as they pertain to Florida’s destructive and diverse non-native squamate reptile assemblage. In the first phase …

Hydrology And Fire History Drive Patterns In Post-Fire Recovery In Everglades Wetland Ecosystem, Jenisha Oli

FIU Electronic Theses and Dissertations

Although fire-adapted ecosystems in Everglades require regular burning to maintain wetland ecosystems, land management and climate-change have altered natural fire-regime. Due to changes in climate and hydrology, historical fire-regimes may become irrelevant. To understand changing fire return intervals, I look at patterns in ecosystem recovery, where fast recovery is indicative of resilience and adaption with an objective of understanding post-fire recovery time in Everglades. I evaluated how post-fire recovery rates were influenced by hydrology and fire-history (1948-2019) by measuring changes in normalized difference vegetation index following fires that burned between 2005-2019 within Everglades. Hydrology had stronger effect on post-fire recovery …

How Weeds Affect Insects In Mango Cultivation Of South Florida, Blaire Kleiman

FIU Electronic Theses and Dissertations

The use of weeds as insectary plants is an emerging management tactic by agroecologists and entomologists to sustain beneficial insect species. Fallow lands have always been used by insects and are an important part of their diet in fragmented ecosystems. Weeds provide floral resources to beneficial insects such as pollinators, parasitoids, and predators and resources to keep them within a field in between crop flowering. Using weeds as a tool in tropical fruit production reliant on pollination like Mango (Mangifera indica) allows farmers to reduce herbicide use, increases the biodiversity of both plants and insects, and increases pollination of crops …

Taxonomy And Systematics Of Plumeria L. (Apocynaceae) In The Caribbean Islands, Nichole M. Tiernan

FIU Electronic Theses and Dissertations

Plumeria L. (Apocynaceae) is a genus of flowering trees and shrubs that are often cultivated in tropical gardens worldwide. The majority of its species occur in the Greater Antilles with many as single-island endemics. The only comprehensive revision for the genus was done by Robert E. Woodson Jr. (1937) who recognized only seven species and created a ‘Plumeria obtusa complex’ with a plethora of synonyms. The first study provides an overview of the Caribbean Island members of the genus with a focus on Plumeria filifolia Griseb., a thin-leaved species endemic to Cuba that is featured because of its incredible …

Developing Sustainable Soil Building Strategies For Tropical Fruit Groves Within The South Florida Redland, Ariel Freidenreich

FIU Electronic Theses and Dissertations

Tropical fruit production has become a lucrative industry in Miami-Dade County. Consequently, developing sustainable farming practices to be applied to these systems to ensure healthy soils and economically viable fruit production is becoming increasingly important. The study is focused on the incorporation of cover cropping as a management strategy for perennial tropical fruit production and its applications for local growers. Cover crops are plants that are grown to cover soil to reduce erosion, increase soil fertility, and enhance farmland biodiversity. The project was specifically designed to test the impacts of highly prolific legumes sunn hemp (Crotalaria juncea) and …

Connections In The Underworld: A Morphological And Molecular Study Of Diversity And Connectivity Among Anchialine Shrimp., Robert Eugene Ditter

FIU Electronic Theses and Dissertations

This research investigates the distribution and population structure of crustaceans, endemic to anchialine systems in the tropical western Atlantic focusing on cave-dwelling shrimp from the family Barbouriidae. Taxonomic and molecular tools (genetic and genomic) are utilized to examine population dynamics and the presence of phenotypic hypervariation (PhyV) of the critically endangered species Barbouria cubensis (von Martens, 1872). The presence of PhyV and its geographic distribution is investigated among anchialine populations of B. cubensis from 34 sites on Abaco, Eleuthera, and San Salvador, Bahamas. Examination of 54 informative morphological characters revealed PhyV present in nearly 90% (n=463) of specimens with no …

Systematic Studies In Myrtaceae Of The Greater And Lesser Antilles, Jonathan A. Flickinger

FIU Electronic Theses and Dissertations

The Myrtaceae, or myrtle family, are a group of flowering trees and shrubs represented in the Americas by over 2000 species of the predominantly Neotropical tribe Myrteae. Recent progress on the challenging systematics of the group has been achieved through molecular phylogenetics, but few of the almost 500 species endemic to the islands of the Greater and Lesser Antilles in the Caribbean have been included in either phylogenetic or revisionary studies. The purpose of my dissertation is therefore to contribute to the description and phylogenetic classification of Antillean Myrtaceae. The first study describes Eugenia walkerae, a new species of …

Beyond Predation: How Do Consumers Mediate Bottom-Up Processes In Ecosystems?, Bradley Austin Strickland

FIU Electronic Theses and Dissertations

By eating and scaring prey, predators can exert strong effects on communities and ecosystems. In addition, some animals may physically alter habitats and may recycle nutrients through digestion, both of which affect resources available to producers. Bottom-up effects initiated by large predators have not been well-studied and could prove to be important for understanding food webs and how ecosystems function. American alligators (Alligator mississippiensis) are abundant mobile predators that are capable of engineering aquatic habitats by moving organic material across ecosystem boundaries and creating and maintaining alligator ponds. In this dissertation, I documented the scale of ecological impacts …

Taking Apart The Time Machine: Investigating Space-For-Time Substitution Modeling In The Florida Everglades, Theresa Kelly Brown

FIU Electronic Theses and Dissertations

Space-for-Time substitution modeling has been used with increasing frequency to identify functional relationships between environmental drivers and ecological responses. I investigated the use of space-for-time substitution as a null model and beta diversity as a validity test for this null model in the Greater Everglades aquatic metacommunity. I began by conducting a literature review and analysis to investigate the suitability of the space-for-time substitution method as a null model. I then analyzed beta diversity of the Greater Everglades aquatic metacommunity through a sums-of-squares approach. Finally, I tested for correlation between the beta diversity analysis and the space-for-time models. Results indicate …

Evolutionary Genetics Of The Genus Zamia (Zamiaceae, Cycadales), Michael Calonje

FIU Electronic Theses and Dissertations

The genus Zamia L. (Zamiaceae), consisting of 77 species, is the most species-rich and widely distributed cycad genus in the New World and is arguably the most morphologically and ecologically diverse genus in the Cycadales. We utilized a multilocus sequence dataset of 10 independent loci (9 single copy nuclear genes + 1 plastid) and extensive taxon sampling (over 90% of species) to infer phylogenetic relationships within Zamia. We infer a robust phylogenetic tree for the genus with a strong geographic delimitation of clades and find that four morphological characters typically used for diagnostic purposes in the genus exhibit a high …

Cavity Nest Webs As A Template For Studying Non-Trophic Interactions In Invasion Ecology, Joshua M. Diamond

FIU Electronic Theses and Dissertations

Invasive exotic animals are considered destructive forces in cities for preying on and competing with native species. I examined an aspect of competition from a different perspective, focusing on the role of Miami’s rich exotic bird assemblage in its cavity nest web, where a supply of woodpecker-created cavity nests limited by urbanization is the focal point of competition. We located 967 nest trees with 1,864 cavities and determined that woodpeckers successfully nested in this tropical urban region by exploiting standing dead palms (snags). Native upland forests were the most important cover type for woodpeckers but planted landscapes like parks and …

Survival At The Summits: Amphibian Responses To Thermal Extremes, Disease, And Rapid Climate Change In The High Tropical Andes, Kelsey E. Reider

FIU Electronic Theses and Dissertations

Understanding biological responses to climate change is a primary concern in conservation biology. Of the ecosystems being rapidly impacted by climate change, those in the high-elevation tropics are among the most poorly studied. The tropical Andean biosphere includes record elevations above 5000 meters, where extreme environmental conditions challenge many organisms. In the Cordillera Vilcanota of southern Peru, frogs including Pleurodema marmoratum and Telmatobius marmoratus have expanded their ranges to 5244 – 5400 m into habitats created by glacial recession, making them among the highest recorded amphibians on Earth. To understand how hydrologic alterations from loss of glacial meltwater and climatic …

The Real Snowbirds Of South Florida: Using Citizen Science To Assess The Ranges Of South Florida's Overwintering Birdsh, Alexander V. Levine

FIU Electronic Theses and Dissertations

The overwintering ranges of North American bird populations are shifting and the winter ranges of south Florida’s landbirds remain understudied. Expert-drawn range maps used for scientific studies and environmental public policy could therefore be depicting inaccurate ranges for many migratory birds. This study used citizen science data from eBird (2001–2017) to evaluate patterns in overwintering avian species richness and identify discrepanciesin expert-drawn species range maps for overwintering passerines in south Florida. Most of Florida’s overwintering bird species were sighted in south Florida. Of the species observed there between 2001 and 2017, 66% had range map discrepancies. Fifteen target species were …

The Evolution And Domestication Genetics Of The Mango Genus, Mangifera (Anacardiaceae), Emily Warschefsky

FIU Electronic Theses and Dissertations

Domesticated species are vital to global food security and have also been foundational to the formulation and advancement of evolutionary theory. My dissertation employs emerging molecular genomic tools to provide an evolutionary context for crop improvement. I begin by providing a contemporary perspective on two components of domestication biology that have long been used to improve crop production: wild relatives of crop species and grafted rootstocks. First, I propose a method to systematically introgress crop wild relative diversity into crop breeding programs. Then, I explore rootstocks, the lesser-known half of the perennial crop equation, documenting prevalence and diversity, cataloging rootstock …

Impact Of Herbivory, Structural Complexity, And Sediment On Caribbean Coral Reefs, Alain Duran

FIU Electronic Theses and Dissertations

The resilience of coral reefs depends, among others, upon local physical and biological characteristics. This dissertation focused on how herbivory, structural complexity, and sedimentation can impact the structure, function, and, ultimately, resilience of Caribbean coral reefs. We filled an important knowledge gap related to trophic niche and ecological roles of surgeonfishes (A. coeruleus and A. tractus), two of the most important herbivorous fishes in the Caribbean. We showed that both species feed primarily on turf algae preventing further progression of algal succession while A. tractus may also help reduce macroalgal abundance by targeting common macroalgal species such as …

A Historical Floristic Inventory Of Pine Rockland Fabaceae (Leguminosae), Adel L. Pena

FIU Electronic Theses and Dissertations

The objectives of this study were to investigate temporal changes in the diversity of pine rockland Fabaceae, induced by anthropogenic factors. Herbarium collections spanning 170 years were used to analyze species frequency and richness. The results indicated temporal fluctuations in diversity with frequency of native species highest previous to the year 1920, and exotic-invasive species richness peaking after the 1960s. The accompanying species list resulting from the inventory included 122 Fabaceae species, in 56 genera, with an additional 19 species not previously listed for pine rocklands. The results emphasize the damage caused by early and deliberate introductions of exotic species, …

A Floristic Study Of Halmahera, Indonesia Focusing On Palms (Arecaceae) And Their Seed Dispersal, Melissa E. Abdo

FIU Electronic Theses and Dissertations

The dispersal services of frugivores affect plant community assembly, persistence, and gene flow in the short-term, and in the long-term are critical to ensuring that tropical trees and palms can regenerate in disturbed areas and can migrate amidst climate change. Halmahera is the largest Moluccan island within the Wallacea biodiversity hotspot, yet data on its plant and animal distributions and interactions are almost null. I studied the tropical trees and palms of Halmahera and their seed dispersal dynamics. Chapter I explores the palms of the Moluccan islands through field-, herbarium-, and literature- based studies. The results of herbarium specimen collections …

An Ecological Study Of The Anurans In Tea Plantations In A Biodiversity Hotspot, Lilly M. Eluvathingal

FIU Electronic Theses and Dissertations

Increasing human population size is increasing the demand for resources like timber, oil, tea, coffee, and other crops. Plantation crops mimic some aspects of native habitats, and there are studies that report the presence of some native anuran biodiversity in plantations. I focused on tea plantations in the Western Ghats-Sri Lanka Biodiversity Hotspot and studied the diversity and health of anurans in different habitats found within a tea cultivation area, near Munnar region in the Western Ghats, India. The landscape includes tea bushes, native evergreen shola forest patches, and eucalyptus forest stands. I reviewed 40 studies comparing amphibian species richness …

Microbial Functional Diversity And The Associated Biogeochemical Interactions Across Miami-Dade County, Florida Soils, Priyanka Kushwaha

FIU Electronic Theses and Dissertations

Decomposition of soil organic matter by microbial processes results in carbon sequestration within soils and/or carbon loss via atmospheric emission of carbon dioxide and methane. Natural as well as anthropogenic factors have been documented to impact soil microbial diversity and the associated biogeochemical functions. The soil microbial communities co-inhabiting Miami-Dade County soils, Florida are under threat because of the ongoing restoration efforts in the adjoining Florida Everglades Parks, predicted climatic changes such as sea-level rise and high rainfall, as well as urbanization. Therefore, an improved understanding of the current microbial functional communities is essential to better assess the impact of …

Biogeographical Patterns Of Soil Microbial Communities: Ecological, Structural, And Functional Diversity And Their Application To Soil Provenance, Natalie Damaso

FIU Electronic Theses and Dissertations

The current ecological hypothesis states that the soil type (e.g., chemical and physical properties) determines which microbes occupy a particular soil and provides the foundation for soil provenance studies. As human profiles are used to determine a match between evidence from a crime scene and a suspect, a soil microbial profile can be used to determine a match between soil found on the suspect’s shoes or clothing to the soil at a crime scene. However, for a robust tool to be applied in forensic application, an understanding of the uncertainty associated with any comparisons and the parameters that can significantly …

Discovery & Born-Digital Archiving: Open Source Systems For Preservation And Access, L. Bryan Cooper, Margarita Perez-Martinez

Works of the FIU Libraries

The Everglades Explorer (EE) portal at http://ee.fiu.edu continues to evolve with the addition of the Internet Archive's Archive-It, and future planned alignment with the Digital Public Library of America (DPLA). The reasons for the development of the portal continue to exist, as originally perceived four years ago. Adaptations to ongoing change and system testing continues, and the use of Archive-It has broad institutional potential beyond EE. Cross-walking skills continue to grown, and will benefit future syndication and discovery system integration. The metadata normalization and harmonization will help save time for the end-user. Preservation and access to learning and research …

Regional Evolutionary Distinctiveness And Endangerment As A Means Of Prioritizing Protection Of Endangered Species, Emily K. Brantner

FIU Electronic Theses and Dissertations

Conservation is costly, and choices must be made about where to best allocate limited resources. I propose a regional evolutionary diversity and endangerment (RED-E) approach to prioritization of endangered species. It builds off of the evolutionary diversity and global endangerment (EDGE) approach, but will allow conservation agencies to focus their efforts on species in specific regions. I used the RED-E approach to prioritize mammal and bird species listed under the U.S. Endangered Species Act (ESA), as well as to make a ranking of species without ESA critical habitat (CH), as a practical application. Regional conservation approaches differ significantly from global …

Mangiferin As A Biomarker For Mango Anthracnose Resistance, Herma Pierre

FIU Electronic Theses and Dissertations

Mangos (Mangifera indica L.) are tropical/subtropical fruits belonging to the plant family Anacardiaceae. Anthracnose is the most deleterious disease of mango both in the field and during postharvest handling. It is most commonly caused by the Colletotrichum gloeosporioides complex. Mangiferin, a xanthanoid compound found in at least twelve plant families worldwide (Luo et al., 2012), is present in large amounts of the leaves and edible mangos. Even though this compound plays a pivotal role in the plant’s defense against biotic and abiotic stressors, no correlations been made between the compound and mango anthracnose resistance.

Mangos were collected, grouped …

Linking Old Librarianship To New: Aligning 5-Steps Of The Innovator's Dna In Creating Thematic Discovery Systems For The Everglades, L. Bryan Cooper, Margarita Perez Martinez

Works of the FIU Libraries

This poster presentation from the May 2015 Florida Library Association Conference, along with the Everglades Explorer discovery portal at http://ee.fiu.edu, demonstrates how traditional bibliographic and curatorial principles can be applied to: 1) selection, cross-walking and aggregation of metadata linking end-users to wide-spread digital resources from multiple silos; 2) harvesting of select PDFs, HTML and media for web archiving and access; 3) selection of CMS domains, sub-domains and folders for targeted searching using an API.

Choosing content for this discovery portal is comparable to past scholarly practice of creating and publishing subject bibliographies, except metadata and data are housed in …

Examining Gradients In Novelty: Native And Non-Native Fish Assemblages In Everglades Canals, David A. Gandy

FIU Electronic Theses and Dissertations

Novel ecosystems emerge from alterations to historic abiotic regimes and contain new species combinations. Everglades canals offer an opportunity to understand the function of novel habitat for native and non-native fishes and how novel conditions in turn influence distribution, abundance and assembly patterns. I examined native and non-native fish assemblages collected across a gradient in novelty, defined by the loss of wetland connectivity and habitat complexity. As novelty increased, native species richness and abundance strongly declined, and the contribution of non-natives increased. Community structure vastly differed among canals and was strongly influenced by spatial factors and secondarily by hydrological factors. …

Effects Of Multiple Ecological Drivers On Recruitment And Succession Of Coral Reef Macroalgal Communities, Alain Duran

FIU Electronic Theses and Dissertations

The study evaluated the effects of herbivory pressure, nutrient availability and potential propagule supply on recruitment and succession of coral reef macroalgal communities. Recruitment and succession tiles were placed in a nutrient-herbivory factorial experiment and macroalgal abundances were evaluated through time. Proportional abundances of macroalgal form-functional groups on recruitment and succession tiles were similar to field established communities within treatments, evidencing possible effects of adult macroalgae as propagule supply. Macroalgal abundance of recruitment tiles increased with nutrient loading and herbivory reduction combined whereas on succession tiles nutrient loading increased abundance of articulated-calcareous only when herbivores were excluded. Macroalgal field established …

Seasonal Activity And Road Mortality Of The Snakes Of The Pa-Hay-Okee Wetlands Of Everglades National Park, Frank S. Bernardino

FIU Electronic Theses and Dissertations

The current study describes the composition and activity of the snake community of the Pa-hay-okee wetlands of Everglades National Park. The study was conducted from January 1987 to January 1989. Sixteen species were observed, with Thamnophis sauritus, Thamnophis sirtalis, Nerodia fasciata pictiventris, and Agkistrodon piscivorus representing 90.2% of the total sample. The seasonal distribution and activity of the snakes were closely related to fluctuations in the water table. Most activity occurred in the winter months as snakes migrated west following the drying water edge of Shark River Slough. Seventy percent of all snakes observed during this study …