Biodiversity Commons^™

Cross-Pollination: Building A Co-Taught Course To Examine Art And Sex Through The Lens Of Botany, Christopher T. Martine, Diamanda A. Zizis, Anna K. Kell

Faculty Journal Articles

Driven by overlapping interests in plants, art, and diversity in sex expression, Anna Kell (Department of Art and Art History) and Chris Martine (Department of Biology) developed a course that integrates the perspectives of a visual artist and a botanist. Art & Sex Through the Lens of Botany seeks to impart the importance of making connections across disciplines and the value of visual literacy across academic lines. The course introduces foundational concepts in each field and encourages students to integrate and explore these different systems of knowledge and their intersections. In addition to developing fluencies related to both general botany …

Morphological Trait Evolution In Solanum (Solanaceae): Evolutionary Lability Of Key Taxonomic Characters, Rebecca Hilgenhof, Edeline Gagnon, Sandra Knapp, Xavier Aubriot, Eric Tepe, Lynn Bohs, Leandro Giacomin, Yuri Gouvea, Andres Orejuela, Christopher T. Martine, Clara Ines Orozco, Iris E. Peralta, Tina Sarkinen

Faculty Journal Articles

Solanum is one of the world's largest and economically most important plant genera, including 1245 currently accepted species and several major and minor crops (e.g., tomato, potato, brinjal eggplant, scarlet eggplant, Gboma eggplant, lulo, and pepino). Here we provide an overview of the evolution of 25 key morphological traits for the major and minor clades of this giant genus based on stochastic mapping using a well-sampled recently published phylogeny of Solanum. The most evolutionarily labile traits (showing >100 transitions across the genus) relate to plant structure (growth form and sympodial unit structure), herbivore defence (glandular trichomes), pollination (corolla shape …

A Foundational Population Genetics Investigation Of The Sexual Systems Of Solanum (Solanaceae) In The Australian Monsoon Tropics Suggests Dioecious Taxa May Benefit From Increased Genetic Admixture Via Obligate Outcrossing, Jason T. Cantley, Ingrid E. Jordon-Thaden, Morgan Roche, Daniel S. Hayes, Stephamie Kate, Christopher T. Martine

Faculty Journal Articles

Solanum section Leptostemonum is an ideal lineage to test the theoretical framework regarding proposed evolutionary benefits of outcrossing sexual systems in comparison to cosexuality. Theoretically, non-cosexual taxa should support more genetic diversity within populations, experience less inbreeding, and have less genetic structure due to a restricted ability to self-fertilize. However, many confounding factors present challenges for a confident inference that inherent differences in sexual systems influence observed genetic patterns among populations. This study provides a foundational baseline of the population genetics of several species of different sexual systems with the aim of generating hypotheses of any factor—including sexual system—that influences …

Phylogenomic Discordance Suggests Polytomies Along The Backbone Of The Large Genus Solanum, Edeline Gagnon, Rebeccca Hilgenhof, Andrés Orejuela, Angela J. Mcdonnell, Gaurav Sablok, Xavier Aubriot, Leandro Giacomin, Yuri Gouvêa, Thamyris Bragionis, João Renato Stehmann, Lynn Bohs, Steven Dodsworth, Christopher T. Martine, Péter Poczai, Sandra Knapp, Tiina Särkinen

Faculty Journal Articles

Premise of the study

Evolutionary studies require solid phylogenetic frameworks, but increased volumes of phylogenomic data have revealed incongruent topologies among gene trees in many organisms both between and within genomes. Some of these incongruences indicate polytomies that may remain impossible to resolve. Here we investigate the degree of gene-tree discordance in Solanum, one of the largest flowering plant genera that includes the cultivated potato, tomato, and eggplant, as well as 24 minor crop plants.

Methods

A densely sampled species-level phylogeny of Solanum is built using unpublished and publicly available Sanger sequences comprising 60% of all accepted species (742 spp.) …

Lepidopteran Granivory Reduces Seed Counts In A Rare Species Of Riparian Scour Prairies, Cheyenne Moore, Angela J. Mcdonnell, Scott Schuette, Christopher T. Martine

Faculty Journal Articles

In Pennsylvania Baptisia australis var. australis is found along only four waterways: the Allegheny River, Youghiogheny River, Clarion River, and Red Bank Creek. Because of its limited distribution and small number of extant populations, the species is considered state-threatened in Pennsylvania. In addition, the riparian prairie habitat that Pennsylvania Baptisia australis var. australis is restricted to is also in decline and considered vulnerable. Because of these conservation concerns, insights into the natural history of the taxon in the state is valuable and will inform conservation efforts. Field surveys and fruit collections along the Allegheny River and herbarium collections were used …

A Basic Ddradseq Two‐Enzyme Protocol Performs Well With Herbarium And Silica‐Dried Tissues Across Four Genera, Ingrid E. Jordon-Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nicolas Diaz, Jason T. Cantley, Christopher T. Martine, Carl J. Rothfels

Faculty Journal Articles

Premise

The ability to sequence genome‐scale data from herbarium specimens would allow for the economical development of data sets with broad taxonomic and geographic sampling that would otherwise not be possible. Here, we evaluate the utility of a basic double‐digest restriction site–associated DNA sequencing (ddRADseq) protocol using DNAs from four genera extracted from both silica‐dried and herbarium tissue.

Methods

DNAs from Draba, Boechera, Solidago, and Ilex were processed with a ddRADseq protocol. The effects of DNA degradation, taxon, and specimen age were assessed.

Results

Although taxon, preservation method, and specimen age affected data recovery, large phylogenetically informative …

Temperate Eurasian Origins Of Hawaiian Chenopodium (Amaranthaceae) Plus Description Of A New Species Endemic To Moloka‘I, Jason T. Cantley, Angela J. Mcdonnell, J Branson, S R. Long, W Garnett, Christopher T. Martine

Faculty Journal Articles

Chenopodium taxa of Hawai‘i are tetraploids distinguished from other members of the circumglobally distributed genus by minute morphological characters. Because of these reasons, the geographic origin of Hawaiian Chenopodium has remained unclear. Across the Hawaiian Archipelago, Chenopodium taxa are morphologically variable and grow in highly disparate xeric habitats, especially in terms of precipitation, temperature, wind, salt spray, and solar irradiation. Habitats include dry subalpine shrublands, sandy beach strand of atolls in the Northwest Hawaiian Islands, dry forests, and precipitously tall sea cliffs of northwestern Moloka‘i. From the Moloka‘i sea cliffs, which are battered by high energy winds, salt spray, and …

Integrated Pest Management In The Academic Small Greenhouse Setting: A Case Study Using Solanum Spp. (Solanaceae)., Daniel S. Hayes, Ingrid E. Jordon-Thaden, Jason T. Cantley, Angela J. Mcdonnell, Christopher T. Martine

Faculty Journal Articles

Premise

Botanical faculty and staff at academic institutions are often tasked with establishing and/or caring for plant collections held in small greenhouse facilities. Once plants are in place, an especially acute challenge is managing plant pest/pathogen populations. Integrated pest management (IPM) approaches are an excellent option, but few examples exist in the literature of successful programs that have been developed in academic small greenhouse settings.

Methods and Results

Over several years, we developed an IPM program for two small research greenhouses on the campus of a primarily undergraduate institution where hundreds of plants have been grown for studies in the …

Solanum Plastisexum, An Enigmatic New Bush Tomato From The Australian Monsoon Tropics Exhibiting Breeding System Fluidity., Angela J. Mcdonnell, Heather B. Wetreich, Jason T. Cantley, Peter Jobson, Christopher T. Martine

Faculty Journal Articles

A bush tomato that has evaded classification by solanologists for decades has been identified and is described as a new species belonging to the Australian “Solanum dioicum group” of the Ord Victoria Plain biogeographic region in the monsoon tropics of the Northern Territory. Although now recognised to be andromonoecious, S. plastisexum Martine & McDonnell, sp. nov. exhibits multiple reproductive phenotypes, with solitary perfect flowers, a few staminate flowers or with cymes composed of a basal hermaphrodite and an extended rachis of several to many staminate flowers. When in fruit, the distal rachis may abcise and drop. A member of …

Phylogeny Of The Australian Solanum Dioicum Group Using Seven Nuclear Genes: Testing Symon’S Fruit And Seed Dispersal Hypotheses., Christopher T. Martine, Ingrid E. Jordon-Thaden, Angela J. Mcdonnell, Jason T. Cantley, Daniel S. Hayes, Morgan D. Roche, Emma S. Frawley, Ian S. Gilman, David C. Tank

Faculty Journal Articles

The dioecious and andromonoecious Solanum taxa (the “S. dioicum group”) of the Australian Monsoon Tropics have been the subject of phylogenetic and taxonomic study for decades, yet much of their basic biology is still unknown. This is especially true for plant-animal interactions, including the influence of fruit form and calyx morphology on seed dispersal. We combine field/greenhouse observations and specimen-based study with phylogenetic analysis of seven nuclear regions obtained via a microfluidic PCR-based enrichment strategy and high-throughput sequencing, and present the first species-tree hypothesis for the S. dioicum group. Our results suggest that epizoochorous trample burr seed …

Resurrection Of An East African House Bat Species, Scotophilus Altilis (Chiroptera: Vespertilionidae), Peter Vallo, Deeann Reeder, Megan E. Vodzak, Petr Benda

Faculty Journal Articles

Several house bat specimens superficially resembling the white-bellied house bat Scotophilus leucogaster (Cretzschmar, 1830), were recently captured in southwestern Ethiopia and southern South Sudan. These S. cf. leucogaster differed from typical S. leucogaster by their slightly smaller size and ventral coloration, conforming instead with the original description of S. altilis Allen, 1914. Scotophilus altilis is an overlooked taxon known from the Blue Nile region in Sudan that is currently considered a junior synonym of S. leucogaster. Phylogenetic analysis of mitochondrial cytochrome b gene (cytb) sequences revealed S. cf. leucogaster as a sister clade …

Pangolins In Global Camera Trap Data: Implications For Ecological Monitoring, Hannah Khwaja, Claire Buchan, Oliver R. Wearn, Laila Bahaa-El-Din, Drew Bantlin, Henry Bernard, Robert Bitariho, Torsten Bohm, Jimmy Borah, Jedediah Brodie, Wanlop Chutipong, Byron Du Preez, Alex Ebang-Mbele, Sarah Edwards, Emilie Fairet, Jackson L. Frechette, Adrian Garside, Luke Gibson, Anthony Giordano, Govindan Veeraswami Gopi, Alys Granados, Sanjay Gubbi, Franziska Harich, Barbara Haurez, Rasnys W. Havmoller, Olga Helmy, Lynne A. Isbell, Kate Jenks, Riddhika Kalle, Anucha Kamjing, Daphawan Khamcha, Cisquet Kiebou-Opepa, Margaret Kinnaird, Caroline Kruger, Anne Laudisoit, Antony Lynam, Suzanne E. Macdonald, John Mathai, Julia Metsio Sienne, Amelia Meier, David Mills, Jayasilan Mohd-Azian, Yoshihiro Nakashima, Helen C. Nash, Dusit Ngoprasert, An Nguyen, Tim O'Brien, David Olson, Christopher Orbell, John Poulsen, Tharmalingam Ramesh, Deeann Reeder, Rafael Reyna, Lindsey N. Rich, Johanna Rode-Margono, Francesco Rovero, Douglas Sheil, Matthew H. Shirley, Ken Stratford, Niti Sukumal, Saranphat Suwanrat, Naruemon Tantipisanuh, Andrew Tilker, Tim Van Berkel, Leanne K. Van Der Weyde, Matthew Varney, Florian Weise, Ingrid Wiesel, Andreas Wilting, Seth T. Wong, Carly Waterman, Daniel W S Challender

Faculty Journal Articles

Despite being heavily exploited, pangolins (Pholidota: Manidae) have been subject to limited research, resulting in a lack of reliable population estimates and standardised survey methods for the eight extant species. Camera trapping represents a unique opportunity for broad-scale collaborative species monitoring due to its largely non-discriminatory nature, which creates considerable volumes of data on a relatively wide range of species. This has the potential to shed light on the ecology of rare, cryptic and understudied taxa, with implications for conservation decision-making. We undertook a global analysis of available pangolin data from camera trapping studies across their range in Africa and …

Museum Collections: Natural History Training Bridges Time, Space, And Digital Platforms., Anna Monfils, Karen Powers, Christopher J. Marshall, James F. Smith, Chris Martine, L. Alan Prather

Faculty Journal Articles

Natural history collections offer a number of unique physical and virtual opportunities to create formal and informal progressive learning environments. Collections provide direct interaction with biodiversity as it changes through time and space. Collections-based experiences lead to an increased understanding and substantive interaction with the living world. Recent studies demonstrate how nature and outdoor experiences can improve learning. We discuss how collections, and the data associated with collections, are a critical component linking nature and scientific inquiry. Partnerships that develop around collections and collections-based science can foster innovative educational and research experiences that are enhanced by access to museum specimens. …

Evidence Of Rock Kangaroo Seed Dispersal Via Faecal Seed Storage In A Tropical Monsoon Community, Chris Martine, Ally Boni, Elizabeth Capaldi, Gemma Lionheart, Ingrid E. Jordon-Thaden

Faculty Journal Articles

While some of the plant species of the ‘Sandstone Country’ along the escarpment of western Arnhem Land produce fleshy fruits and appear to rely on biotic methods of seed dispersal, little is known about the methods by which this is achieved – and few potential dispersers co-occur in the sandstone outcrop communities. For the present study, scat collections were made on outcrops in the northeastern area of Kakadu National Park with the hope of uncovering relationships between local frugivores and fruit-producers, and providing evidence for seasonal storage of mammal-dispersed seeds in scat prior to germination. The goals of the present …

Multiple Records Of Monoecy In Dioecious Taxa Of Hawaiian Coprosma Spp. (Rubiaceae)., Jason T. Cantley, Danielle Frohlich, Chris Martine

Faculty Journal Articles

The breeding systems of the 110+ species of Coprosma J.R. Forst. & G. Forst. across the Pacific are largely considered dioecious, with male and female flowers occurring on separate plants (oliver 1935). However, for many species, particularly of New Zealand, the dioecious breeding system is leaky. Coprosma species exhibiting leaky dioecy are primarily dioecious, with male and female flowers on separate plants, but individuals occasionally develop apparently functional bisexual flowers, which sporadically occur among an abundance of unisexual flowers. A putative monoecious Coprosma taxon was once reported for the Macquarie Island individuals of C. perpusilla Colenso (= C. pumila Hook.f.), …

European Frogbit (Hydrocharis Morsus-Ranae) In The Champlain/Adirondack Region: Recent Inferences, Chris Martine, Stephen Langdon, Timothy Shearman, Casey Binggeli, Timothy B. Mihuc

Faculty Journal Articles

As part of its north-south movement following introduction to Canada, Hydrocharis morsus-ranae L. (Hydrocharitaceae) has recently become established in slow-moving waters of the Champlain/Adirondack region of the northeastern US. The species is present on both the New York and Vermont shores of Lake Champlain and, so far, at a single location in the interior of the Adirondack Park. The southernmost Champlain/Adirondack occurrence is in the Champlain Canal south of Whitehall, NY (L. Eichler, Darrin Freshwater Institute, pers. comm.), within 25 miles of the Hudson River watershed—a population first recorded around 2006. Entry into the Hudson watershed, whether from the canal …

Promoting Amphibian Conservation Through The College Classroom: Detection Of Batrachochytrium Dendrobatidis Among Local Amphibians, Julie Wunder, Noel Lampazzi, Kelsey Acre, Nicholas Bent, Sadie Canter, Alexandra Chapman, Margaret Davies, David Kashan, Jonathan Keiley, Rachel Macintyre, Tamara Milton, Kara Weichler, Matthew Wilson, Mizuki Takahashi

Faculty Journal Articles

Many global amphibian declines have been linked to the fungal pathogen Batrachochytrium dendrobatidis (Bd). The knowledge on Bd distribution provides a fundamental basis for amphibian conservation planning. Yet, such Bd distribution information is currently insufficient, in particular at a regional scale. The college classroom provides an excellent opportunity to expand the knowledge of Bd distribution. Here we provide an example of such research projects to detect Bd prevalence among local amphibians in a college course setting and present the results of work conducted in central Pennsylvania, USA. We collected toe clips and conducted PCR assays of six species, …

Extensive Clonal Spread And Extreme Longevity In Saw Palmetto, A Foundation Clonal Plant, Mizuki K. Takahashi, Liana M. Horner, Toshiro Kubota, Nathan A. Keller, Warren G. Abrahamson Ii

Faculty Journal Articles

The lack of effective tools have hampered our ability to assess the size, growth and ages of clonal plants. With Serenoa repens (saw palmetto) as a model, we introduce a novel analytical framework that integrates DNA fingerprinting and mathematical modelling to simulate growth and estimate ages of clonal plants. We also demonstrate the application of such life-history information of clonal plants to provide insight into management plans. Serenoa is an ecologically important foundation species in many Southeastern United States ecosystems; yet, many land managers consider Serenoa a troublesome invasive plant. Accordingly, management plans have been developed to reduce or eliminate …