Biodiversity Commons^™

Urban Nature Indexes Tool Offers Comprehensive And Flexible Approach To Monitoring Urban Ecological Performance, Jennifer Rae Pierce, Laura Costadone, Lelani Mannetti, Joeri Morpurgo, Charlyn Elaine Green, Michael D. Halder, Pablo Arturo Lopez Guijosa, Abner L. Bogan, Russell Galt, Jonathan Hughes

ODU Articles

We present the Urban Nature Indexes (UNI), a comprehensive tool that measures urban ecological performance under one standard framework linked to global commitments. The UNI was developed by interdisciplinary experts and evaluated by practitioners from diverse cities to capture each city’s ecological footprint from local to global scale. The UNI comprises six themes (consumption drivers, human pressures, habitat status, species status, nature’s contributions to people, and governance responses) that encompass measurable impacts on climate change, biodiversity loss, ecosystem services, pollution, consumption, water management, and equity within one comprehensive system. Cities then adapt the UNI to their context and capacity by …

Species Richness Of Moths In Parks Surrounded By Varying Levels Of ​Urbanization Around Nashville, Tennessee, Maxwell Stone, Allie Bennett

Science University Research Symposium (SURS)

Moths can act as indicators of environmental wellness due to their pollution sensitivity and the complexity of biodiversity required to support their life cycles. Urbanization can impact the occurrence of moths in protected green spaces. Higher moth species richness was hypothesized to occur in parks surrounded by more rural areas. Three metropolitan parks were chosen in the Nashville area: downtown, within a suburban neighborhood, and in a rural area. Tree canopy cover and degree of impervious surfaces were assessed for each park and surrounding area using iTreeCanopy. Moths were attracted to a white sheet using a mercury vapor bulb, UV …

Monitoring The Effects Of Poultry Waste On Fishes And Macroinvertebrates In The Sabine River, Karley R. Parker

Biology Theses

Freshwater is a vital resource that provides life and sustainability for almost all organisms on Earth. It is important to maintain its health and protect it from emerging pollutants that pose a threat to the organisms that use it. Pollution continues to threaten the well-being of the environment’s freshwater sources all around the world that could lead to damaging effects in the future. The Sabine River is a major freshwater resource in the east Texas and western Louisiana areas that provides a habitat for thousands of organisms as well as other domestic uses for humans. In 2019, a waste discharge …

Bryophytes Of Goochland County, Virginia, Mikayla Quinn

Honors Theses

Bryophytes are non-vascular land plants that include mosses, liverworts, and hornworts. Although easier to overlook because of their smaller size, bryophytes are a fundamental part of the ecosystem. As such, maintaining record of their biodiversity is important. Yet, records of bryophyte species in Goochland County, VA were low compared to more thoroughly documented counties such as Prince Edward County. This study expands the documentation of bryophyte flora and presents a checklist of bryophyte species found Virginia’s Goochland County from 2020-2023. Fieldwork conducted at public and privately-owned properties throughout the county between January 2020 and March 2023 yielded 702 specimens that …

Harnessing Citizen Science And Collections Data For Invasive Plant Surveillance, Adin L. Ring

Library Map Prize

Our main source of information about the distribution of invasive plants in the United States comes from occurrence records in three categories: biological collections (physical plant specimens in museums), citizen science (opportunistic observations by untrained civilians), and invasion monitoring (structured observation by government or non-profit agencies). This study compiles a set of 3.1 million occurrence records of 3,578 introduced plant species in the continental United States, and infers spatial, temporal, and taxonomic biases by comparing the three categories of data. We find that citizen science contributes the largest bulk of records, and does better capturing visually conspicuous plants and very …

Csi Botany: Dna Barcode “Fingerprints” Identify Cryptic Urban Flora, Luis R. Vega

Theses

As short genomic markers, DNA barcodes can play a role in conservation by identifying cryptic species and hybrids when morphological approaches fall short. Here we present our application of barcodes to the identities of two wetland taxa as part of an ongoing floristic inventory of Van Cortlandt Park (VCP), Bronx, NY. Previous barcode data by Marriott et al. (2018) identified the VCP lake water lily as the exotic Nymphaea alba, rather than the native N. odorata as historically described. In addition, cattails in the park were historically identified as the native Typha latifolia and the exotic T. angustifolia …

Hitting The Sweet Spot: Optimizing Camera Trapping Effort For Estimating Biodiversity In Coastal Environments, Ella Dipetto, Oleksii Dubovyk, Chi Wei, Angela Brierly, Eric Walters, Alex Teodorescu, Jillian Murphy

College of Sciences Posters

Wildlife trail cameras, or “camera traps”, have become an effective tool in ecological research and conservation management across a variety of ecosystems to monitor a wide range of taxa. Camera trapping allows for extended survey time in traditionally hard-to-survey environments and has greatly increased our ability to detect cryptic species. One question ecologists commonly face is how much sampling effort is required to accurately estimate community composition. Despite the abundant literature that uses camera trapping techniques, few studies have occurred in coastal saltmarsh ecosystems. These ecosystems are being lost at a rapid rate from land conversion, pollution, and other anthropogenic …

Farming For The Future; Managing Lowland Grassland For Biodiversity, Sally Griffin

ORBioM (Open Research BioSciences Meeting)

Grassland is Ireland’s most expansive terrestrial habitat type covering >58% of the land cover but its biodiversity is under serious threat of agricultural intensification or land abandonment. While the decline in Irish grassland biodiversity has been recognised, there is a paucity of research into the restoration of lowland mesotrophic grassland. Most of Ireland’s grasslands are privately farmed mainly for pasture, therefore, appropriate agricultural management techniques for biodiversity restoration are vital. The purpose of this research was to first classify the lowland grassland vegetation in Killarney National Park, Co. Kerry in the west of Ireland (Approx. 244ha). Then to investigate selected …

Life After Death – Does Carcass Biodiversity Scale With Carcass Body Size?, Troy Warfield

Biological Sciences Undergraduate Honors Theses

Mammals play a large role in the ecosystems where some, especially large-bodied mammals, act as ecosystem engineers. Mammal carcasses, particularly those of large body mass act as a temporary island of dense nutrients that support other organisms, including other mammal species, for an extended period. Research in this field currently focuses on the link between mammal carcass size and nutrient availably or on non-mammalian size and biodiversity, but little is available on the correlation between mammal carcass size and its influence on ecosystem biodiversity. Here we ask, does the available biomass (i.e., body size) of the carcass affect its role …

Phylogenomic Discordance Suggests Polytomies Along The Backbone Of The Large Genus Solanum, Edeline Gagnon, Rebeccca Hilgenhof, Andrés Orejuela, Angela J. Mcdonnell, Gaurav Sablok, Xavier Aubriot, Leandro Giacomin, Yuri Gouvêa, Thamyris Bragionis, João Renato Stehmann, Lynn Bohs, Steven Dodsworth, Christopher T. Martine, Péter Poczai, Sandra Knapp, Tiina Särkinen

Faculty Journal Articles

Premise of the study

Evolutionary studies require solid phylogenetic frameworks, but increased volumes of phylogenomic data have revealed incongruent topologies among gene trees in many organisms both between and within genomes. Some of these incongruences indicate polytomies that may remain impossible to resolve. Here we investigate the degree of gene-tree discordance in Solanum, one of the largest flowering plant genera that includes the cultivated potato, tomato, and eggplant, as well as 24 minor crop plants.

Methods

A densely sampled species-level phylogeny of Solanum is built using unpublished and publicly available Sanger sequences comprising 60% of all accepted species (742 spp.) …

Final Report Floating Upwelling System Harvest Road Oceans, Robert Michael, Scott Bennett

Fisheries occasional publications

A Floating Upwelling System or FLUPSY is a mechanical system for the culture of seed stock during the nursery stage of commercial bivalve production.

Unified Methods In Collecting, Preserving, And Archiving Coral Bleaching And Restoration Specimens To Increase Sample Utility And Interdisciplinary Collaboration, Rebecca Vega Thurber, Emily R. Schmeltzer, Andréa G. Grottoli, Robert Van Woesik, Robert J. Toonen, Mark Warner, Kerri L. Dobson, Rowan H. Mclachlan, Katie Barott, Daniel J. Barshis, Justin Baumann, Leila Chapron, David J. Combosch, Adrienne M.S. Correa, Thomas M. Decarlo, Mary Hagedorn, Laetitia Hédouin, Kenneth Hoadley, Thomas Felis, Christine Ferrier-Pagès, Carly Kenkel, Ilsa B. Kuffner, Jennifer Matthews, Mónica Medina, Christopher Meyer, Corinna Oster, James Price, Hollie M. Putnam, Yvonne Sawall

Biological Sciences Faculty Publications

Coral reefs are declining worldwide primarily because of bleaching and subsequent mortality resulting from thermal stress. Currently, extensive efforts to engage in more holistic research and restoration endeavors have considerably expanded the techniques applied to examine coral samples. Despite such advances, coral bleaching and restoration studies are often conducted within a specific disciplinary focus, where specimens are collected, preserved, and archived in ways that are not always conducive to further downstream analyses by specialists in other disciplines. This approach may prevent the full utilization of unexpended specimens, leading to siloed research, duplicative efforts, unnecessary loss of additional corals to research …

Effects Of Dissimilar Silvicultural Techniques On Small Mammal Communities In Michigan's Upper Peninsula, Breanna R. Gusick

Dissertations, Master's Theses and Master's Reports

Small mammal populations, and predators reliant upon them as food resources, are often challenged by conflicting objectives of timber production and maintenance of quality habitat. With over 70% of the landscape forested, and nearly one-third of the land privately owned, Michigan’s Upper Peninsula (UP) is a matrix of independent management strategies. To assess the effects of various silvicultural regeneration methods on small mammal populations in the Upper Peninsula, we trapped small mammals in experimental silviculture plots, whereby treatments varied by regeneration method (amount of residual canopy cover) and site preparation (i.e., control, tip-up, and scarification), and deer exclosures. We used …

Vertebrate Scavenger Diversity And Ecosystem Services Along An Elevational Gradient In Central Nepal, Aishwarya Bhattacharjee

Dissertations, Theses, and Capstone Projects

A growing number of studies recognize the ecological significance of vertebrate scavengers, and several species belonging to this diverse, functional guild are of high conservation importance around the globe. Studies on taxonomic and functional components of biodiversity often use elevation gradients to comprehensively examine patterns and drivers across multiple spatial scales. Yet, there are relatively few elevational studies on large vertebrates or multi-taxa guilds, and the related variation of their ecosystem services. In particular, scavenger research has largely focused on local-scale studies or regional/global comparisons of local-scale investigations. Moreover, these studies primarily consider taxonomic community characteristics and the patterns of …

Interspersed Denuded Zone (Idz): How Patchy Leaf Litter Dynamics In A Buckthorn-Invaded Urban Woodland Can Affect Microarthropod Species Richness, Angela Stenberg

DePaul Discoveries

Biodiversity loss may serve as a key diagnostic of the Anthropocene. An important driver of this loss is by means of invasive species. In this study of a forest preserve in Chicago, Illinois we examined Interspersed Denuded Zones (IDZs for short), which are areas of patchy leaf litter in invaded forests caused in this case by the rapid decomposition of litter from buckthorn (Rhamnus cathartica). We characterized the leaf litter mass in IDZs and enumerated litter-inhabiting microarthropod populations. We found that plots of high buckthorn density are associated with IDZs: there was significantly less leaf litter mass in …

Refining The Coarse Filter Approach: Using Habitat-Based Species Models To Identify Rarity And Vulnerabilities In The Protection Of U.S. Biodiversity, Anne Davidson, Leah Dunn, Kevin Gergely, Alexa Mckerrow, Steven Williams, Mackenzie Case

University Author Recognition Bibliography: 2021

Preserving biodiversity and its many components is a priority of conservation science and how to efficiently allocate resources to preserve healthy populations of as many species, habitats, and ecosystems as possible. We used the U.S. Geological Survey (USGS) Gap Analysis Project (GAP) species models released in 2018, which identify predicted habitats for terrestrial vertebrates in the conterminous United States, to illustrate hotspots of biodiversity for the major taxonomic groups. This collection represents the first complete compilation of terrestrial vertebrate species models for the conterminous United States (U.S. Geological Survey (USGS), 2018a). We used the species models but not the available …

Nematode Biodiversity In Lincoln, Nebraska's Tallgrass Prairie Corridor, Abigail Borgmeier

Department of Plant Pathology: Dissertations, Theses, and Student Research

The tallgrass prairie was once one of the most diverse grasslands on the planet, however over 95% has been converted to agriculture in the past 150 years. The remaining prairie is still host to a wide variety of plants, insects, mammals, and soil-dwelling microorganisms, creating an incredibly complex ecosystem. The first aim of this study is to compare three approaches for the measurement of nematode diversity within a 10-mile-long protected prairie habitat corridor near Lincoln, Nebraska. The methods are 1) a traditional morphological analysis of 150 nematodes per study site, 2) a metabarcoding analysis using the 18S genetic marker of …

Vignette 03: Birds Of The Salish Sea, Rob Butler

Institute Publications

The significance of the Salish Sea comes into focus when we look at the diversity and abundance of its birds and mammals, some of which are globally, continentally, and nationally important. Of particular importance is the diversity and abundance of species on the Fraser River Delta. There are more species of birds on the delta than any comparable area in Canada, and nearly half of all 550 species of birds reported for British Columbia have been seen on the delta. Despite all that has been learned about marine birds and mammals, large areas of the Salish Sea in Canada have …

Vignette 21: How Ecological Time-Series Inform Response To Stressors, Jackson W.F. Chu

Institute Publications

An important part of biodiversity monitoring includes assessing the differences in vulnerability across parts of an ecosystem. Hypoxia is one of the big three climate- related stressors causing biodiversity loss in the oceans. As the ocean warms, its capacity to hold oxygen becomes reduced. At the same time, concurrent shifts in circulation result in changes to how oxygen gets transported from the surface (where oxygen dissolves into the ocean) to the seafloor and from offshore to inshore areas. When a habitat experiences a substantial drop in oxygen, below the point needed to sustain everyday life, animals respond by migrating away, …

Conspecific Aggression Of Invasive Crayfish, P. Clarkii, In Response To Chemical Cues, Elyse Vetter, Elise Dearment, Audrey Fontes, Gary Bucciarelli, Lee Kats

Seaver College Research And Scholarly Achievement Symposium

Red Swamp Crayfish, Procambarus clarkii, have caused vast damage to the stream ecosystem of the Santa Monica Mountains, following their invasive introduction. Through their extensive eating habits, high levels of aggression, and responsiveness to environmental stimuli, P. clarkii have a tremendous impact on the success of native species in the Santa Monica Mountains. With exposure to chemical cues, crayfish are able to perceive threats and react accordingly. To determine the extent of such chemoreception, pairs of P. clarkii were tested in the laboratory for conspecific aggression in the presence of native newt, native frog, and conspecific alarm cues. The …

The Effects Of Symbiote Ostracods On Invasive Crayfish Behavior, Audrey Fontes, Elyse Vetter, Gary Bucciarelli, Lee Kats

Seaver College Research And Scholarly Achievement Symposium

Invasive crayfish, Procambarus clarkii, are known to negatively impact the biodiversity of Santa Monica Mountain streams. Small symbiotes, ostracods, live on Procambarus clarkii in some local streams. However, their effect on the behaviour of invasive crayfish is unknown. We used an aqueous chlorobutanol solution to remove ostracods from crayfish. We paired control crayfish with those that had ostracods removed and scored aggressive interactions. Crayfish without ostracods were found to be significantly more aggressive towards crayfish with ostracods. When we compared feeding behavior, we found that crayfish without ostracods consumed food more quickly than control crayfish. We again subjected crayfish …

Solutions Human Centered Approach To Conservation, Illustration Department, History, Philosophy, + The Social Sciences Department

Illustration Course Work & Materials

"These essays were were written and illustrated by students at the Rhode Island school of Design in February, 2021. Their perspectives are entirely personal and reflect their efforts within a 5.5-week fused studio/seminar course that was centered on the Sixth Mass Extinction and how biodiversity is changing because of humans. Discovering that science communication is more than delivering just the facts, students were invited to research a topic of personal interest that is relevant to human impacts on biodiversity. Through analysis of data and other scientific information, each sought to synthesize their research and opinions on their topic through a …

Lepidopteran Granivory Reduces Seed Counts In A Rare Species Of Riparian Scour Prairies, Cheyenne Moore, Angela J. Mcdonnell, Scott Schuette, Christopher T. Martine

Faculty Journal Articles

In Pennsylvania Baptisia australis var. australis is found along only four waterways: the Allegheny River, Youghiogheny River, Clarion River, and Red Bank Creek. Because of its limited distribution and small number of extant populations, the species is considered state-threatened in Pennsylvania. In addition, the riparian prairie habitat that Pennsylvania Baptisia australis var. australis is restricted to is also in decline and considered vulnerable. Because of these conservation concerns, insights into the natural history of the taxon in the state is valuable and will inform conservation efforts. Field surveys and fruit collections along the Allegheny River and herbarium collections were used …

Of Biodiversity, Boundaries, And Distribution: The Myxomycetes Of The Philippines And Beyond, Sittie Aisha Bustamante Macabago

Graduate Theses and Dissertations

This dissertation contains a compilation of independently performed studies primarily focusing on the myxomycetes (plasmodial slime molds) from the Philippines and integrating local and worldwide data to demonstrate regional and global trends. The major themes include the following: (I) a review of the diverse group of spore-producing amoeboid protists, including the myxomycetes; (II-IV) diversity assessments in three different groups of islands in the Philippine archipelago; (V) mapping the myxomycetes found in the Philippines for databasing and analyzing the geocoded data; (VI) a study on regional boundaries, including the Philippines, using myxomycete species composition; and, (VII) creating a global species distribution …

Hunting Contests In New York State, Tyler Caffrey

Honors College Theses

The world is currently in a biodiversity crisis and hunting contests cannot continue. Hunting contests are not legitimate wildlife management tools, but exist for entertainment and killing for a prize. Many of the species targeted can be killed without bag limits. Additionally, many wildlife management practices are retroactive, meaning they are in response to an issue. Within New York State, these contests are not regulated by the NYSDEC beyond adhering to hunting regulations. With these factors together, animals targeted by these contests can be hunted to a detrimental point, and then management agencies would step in. These contests face significant …

Population Structure Of A Federally Endangered Plant (Astragalus Jaegerianus Munz, Fabaceae) With Limited Range Using Microsatellites, Sueann Neal

Electronic Theses, Projects, and Dissertations

Studies on population genetics examine the relationship and effects of population structure, migration, gene flow and demographic history, and are therefore important in the conservation of endangered species. Astragalus jaegerianus, a critically federally endangered species found in a geographically restricted range is investigated to determine population structure and genetic variation. Previous research on A. jaegerianus focused on DNA sequence data for cpDNA and nrDNA showed no variation. Further research on A. jaegerianus utilizing AFLP’s on the whole genome indicated substantial gene diversity and population structure consistent with geographically widespread species. AFLP research is a cost-effective process to identify levels …

General Destabilizing Effects Of Eutrophication On Grassland Productivity At Multiple Spatial Scales, Yann Hautier, Pengfei Zhang, Michel Loreau, Kevin R. Wilcox, Eric W. Seabloom, Elizabeth T. Borer, Jarrett E.K. Byrnes, Sally E. Koerner, Kimberly J. Komatsu, Jonathan S. Lefcheck, Andy Hector, Peter B. Adler, Juan Alberti, Carlos A. Arnillas, Jonathan D. Bakker, Lars A. Brudvig, Miguel N. Bugalho, Marc Cadotte, Maria C. Caldeira, Oliver Carroll, Mick Crawley, Scott L. Collins, Pedro Daleo, Laura E. Dee, Nico Eisenhauer, Anu Eskelinen, Philip A. Fay, Benjamin Gilbert, Amandine Hansar, Forest Isbell, Johannes M.H. Knops, Andrew S. Macdougall, Rebecca L. Mcculley, Joslin L. Moore, John W. Morgan, Akira S. Mori, Pablo L. Peri, Edwin T. Pos, Sally A. Power, Jodi N. Price, Peter B. Reich, Anita C. Risch, Christiane Roscher, Mahesh Sankaran, Martin Schütz, Melinda Smith, Carly Stevens, Pedro M. Tognetti, Risto Virtanen, Glenda M. Wardle, Peter A. Wilfahrt, Shaopeng Wang

Wildland Resources Faculty Publications

Eutrophication is a widespread environmental change that usually reduces the stabilizing effect of plant diversity on productivity in local communities. Whether this effect is scale dependent remains to be elucidated. Here, we determine the relationship between plant diversity and temporal stability of productivity for 243 plant communities from 42 grasslands across the globe and quantify the effect of chronic fertilization on these relationships. Unfertilized local communities with more plant species exhibit greater asynchronous dynamics among species in response to natural environmental fluctuations, resulting in greater local stability (alpha stability). Moreover, neighborhood communities that have greater spatial variation in plant species …

Groundwater Quality In Two Semi-Arid Areas Of Algeria: Impact Of Water Pollution On Biodiversity, Redjaimia Lylia, Hadjab Ramzi, Khammar Hichem, Merzoug Djemoi, Saheb Menouar

Journal of Bioresource Management

The biodiversity and quality of subterranean waters were comparatively studied in the Tarf plain near Oum-El-Bouaghi and in the Ksar S’bahi in Oum-El-Bouaghi, in North-eastern Algeria. For this purpose, physicochemical and faunistic analyses were carried out on the water of ten stations located in the area of Tarf, and thirteen in the area of S’bahi. In the wells of Tarf, the average stygobiologic diversity was relatively high in the wells located upstream the dumping site from the city where the groundwater presented low contents of nitrates and orthophosphates. In contrast, the wells located in the spreading zone of Tarf wastewaters …

Taxonomy And Systematics Of The New Zealand Pselaphini (Coleoptera: Staphylinidae: Pselaphinae), Brittany Elin Owens

LSU Doctoral Dissertations

The New Zealand (NZ) Pselaphini was revised at the species level, a phylogenetic analysis was performed using morphological data, and first steps were taken towards the construction of a molecular analysis of the tribe. Eight new genera and 33 new species were discovered from specimens collected from the NZ mainland, offshore islands, Chatham Islands and the Subantarctic Islands. Of the 13 species originally described in the genus Pselaphus by Thomas Broun during the late 19^th and early 20^th centuries, all were either reassigned to the genera Pselaphaulax and Pselaphogenius, or were placed into new genera. Three names …

Diatom Voucher Flora And Comparison Of Collection Methods For Biodiversity Hotspot Upper Three Runs Creek, Katie M. Johnson

Biology Theses

Surface freshwater is a scarce resource. Due to the scarcity and necessity of this resource, it is imperative that its quality is routinely monitored. One way of monitoring water quality is through biological assessments, which include examining algal assemblages. Regionally, little remains known of algal taxa in the southeastern United States. In the past, the Academy of Natural Sciences of Philadelphia (ANSP) conducted biological assessments along the Savannah River finding Gomphonema parvulum (Kützing) Kützing 1849 to be a dominant taxon rendering assessments inconclusive. Recent studies have provided evidence that species complexes and semi-cryptic taxa have been identified within the Gomphonema …