Biodiversity Commons^™

Rare Occurrences Of Free-Living Bacteria Belonging To Sedimenticola From Subtidal Seagrass Beds Associated With The Lucinid Clam, Stewartia Floridana, Aaron M. Goemann

Masters Theses

Lucinid clams and their sulfur-oxidizing endosymbionts comprise two compartments of a three-stage, biogeochemical relationship among the clams, seagrasses, and microbial communities in marine sediments. A population of the lucinid clam, Stewartia floridana, was sampled from a subtidal seagrass bed at Bokeelia Island Seaport in Florida to test the hypotheses: (1) S. floridana, like other lucinids, are more abundant in seagrass beds than bare sediments; (2) S. floridana gill microbiomes are dominated by one bacterial operational taxonomic unit (OTU) at a sequence similarity threshold level of 97% (a common cutoff for species level taxonomy) from 16S rRNA genes; …

Habitat Use By Spruce Grouse In A Fragmented System, Laurel A. Hill

All NMU Master's Theses

The spruce grouse is a boreal obligate species that has been protected in Michigan since 1915 (Ammann 1963). Despite protection, the status of spruce grouse is uncertain in Michigan and other parts of the Midwest, and there have been few attempts at large-scale surveys or monitoring (Williamson et al. 2008). I studied a population of spruce grouse near the southern edge of their range on the Yellow Dog Plains in Marquette County, Michigan.

I investigated fecal pellet counts as a possible method to assess spruce grouse presence and habitat use. My results validated the use of fecal pellet occurrence as …

The Suitability Of Habitats And The Effects Of Human Activities In Osupuko And Olepolos Wildlife Sanctuaries On Maasai Giraffes, Sydney P. Davis

Undergraduate Honors Theses

Habitat quality and resource availability within wildlife dispersal areas in the Amboseli ecosystem are experiencing degradation due to pastoralism and agriculture by humans, which negatively affects the wildlife species that utilize these dispersal areas. Maasai giraffes are a common species that utilize these areas, but information on how human activities and the presence of domestic livestock affects the Maasai giraffe is limited. This study was conducted in two wildlife sanctuaries: Osupuko and Olepolos. Habitat condition assessment was done to determine the quality of habitats found within each sanctuary. The Point-Centered Quadrat Method was used to determine the number of five …

Comparing Pseudo-Environmental And Horizontal Plus Pseudo-Environmental Transmission Of A Probiotic Janithinobacterium Lividum Between Green Frog Tadpoles, Stephen Simonetti

Senior Honors Projects, 2010-2019

The gram-negative bacteria, Janthinobacterium lividum (J.liv) is able to kill the pathogenic fungus known as Batrachochytrium dendrobatidis (Bd), which is known to be causing massive amphibian decline worldwide. The purpose of this research was to identify the ability of the probiotic bacteria, Janthinobacterium lividum (J.liv), to be horizontally transmitted from individual to individual and/or pseudo-environmentally transmitted from individual to environment and back to individual between Lithobates clamitans (green frog) tadpoles. Based on previous findings I hypothesized that pseudo-environmental and horizontal transmission will occur in tadpoles. This would be important for helping stop the decline of amphibians because it would provide …

Using Capture-Mark-Recapture Techniques To Estimate Detection Probabilities & Fidelity Of Expression For The Critically Endangered James Spinymussel (Pleurobema Collina)., Alaina C. Esposito

Masters Theses, 2010-2019

The critically endangered James Spinymussel (Pleurobema collina) is a species of freshwater mussel endemic to Virginia’s James and Dan River basins. In the last 20 years, P. collina has experienced a substantial decline in numbers and currently occupies approximately 10% of its original habitat; however, little information is known about this species to assist in conservation. A 230-meter reach of transitional habitat in Swift Run was selected for repeat observations to estimate detection probabilities using a Capture-Mark-Recapture framework. In June 2014, visual scouting began to locate and tag P. collina (including other mussels in the community) with PIT …

A Systematic Review Of The Soricimorph Eulipotyphla (Soricidae: Mammalia) From The Gray Fossil Site (Hemphillian), Tennessee, Joshua Doby

Electronic Theses and Dissertations

Due in part to the incompleteness of the Cenozoic fossil record in the eastern U.S., the evolution and immigration of shrews (Soricidae) is not well understood. A rich soricid fauna from the Gray Fossil Site (GFS), Washington County, TN, has enabled many new inferences to be made. There are 7 new species in 6 genera: Paenelimnoecus, “Blarinella”, Petenyia, Tregosorex, Crusafontina, and Gen et sp. nov. GFS species of the genera Paenelimnoecus, “Blarinella”, and Petenyia are the first occurrence of each genus in the New World. Tregosorex, Crusafontina, and the N.A. taxon Limnoecus all have their latest documented occurrence at the …

Relative Abundances Of The Recently Introduced Barnacles, Megabalanus Coccopoma And An Unidentified Species Of Megabalanus, In The Southeastern U.S., Jennifer L. Tyson

Honors College Theses

ABSTRACT

Megabalanus coccopoma is a prominent invasive species off the coast of Georgia. Recently, among collected samples thought to be M. coccopoma, several individuals of an unidentified species of barnacle were found. The species has been identified as a Megabalanus species, but is still unidentified to the species level. Species identification is difficult due to morphological variation, inconsistent taxonomic keys, and unknown origin. In this study I developed a method to accurately distinguish M. coccopoma from the unidentified Megabalanus sp. using sequence differences in the mitochondrial Cytochrome Oxidase I (COI) gene. This study will provide an accurate estimate of …

A Comparison Of The Genetic Diversity Of The Class Ii Major Histocompatibility Complex In Ex Situ And In Situ Populations Of African Penguins (Spheniscus Demersus), Emily Willmer

Undergraduate Honors Thesis Projects

As an endangered species, the African penguin (Spheniscus demersus) is at risk of becoming extinct in the wild due to destruction of their coastal habitat and reduction in food availability. The development of a genetically diverse and healthy captive population is important in helping to conserve the species. The goal of this project was to determine the genetic diversity of the class II major histocompatibility complex (MHC) of a wild population of African penguins and compare it to the diversity of the captive population at Mystic Aquarium in Mystic, Connecticut that has previously been studied. We found that …

Sampling Considerations For Amphibian Surveys: Evaluating Risks Of Committing Type I And Type Ii Errors, Kelli Marie Herrick

Theses, Dissertations and Capstones

Global amphibian declines pose a major threat to the world’s biodiversity. We examined the observation bias associated with volunteer based anuran surveys, such as the North American Amphibian Monitoring Protocol (NAAMP). We followed NAAMP protocol to examine if variation in the persons (1-3) in an observer unit affected observer error. We hypothesized that observation units with multiple observers have less observer bias and would better report anuran assemblages compared to single observers. Larger observer units had fewer incidences of false positive observations. Additionally, we attempted to determine which sampling method for the eastern hellbender (Cryptobranchus a. alleganiensis) had the highest …

Mercury Reduces Avian Reproductive Success Through Direct Embryotoxicity Rather Than Altered Parental Behavior, Stephanie Yen Chin

Dissertations, Theses, and Masters Projects

No abstract provided.

Behavioral Response Of Pacific Lamprey (Entosphenus Tridentatus) To Predator Odors, Laurie L. Porter

All Master's Theses

Pacific lamprey (Entosphenus tridentatus), a species facing serious threats to their existence, experience a number of challenges in reaching their desired spawning grounds during the adult migratory phase, and predators are suspected to be one of these challenges. Understanding if Pacific lamprey respond to predator odorants may provide a management tool for use in conjunction with attractants in guiding lamprey to suitable spawning habitat and deterring them from poor habitat. Previous research has failed to explore Pacific lamprey response to predator odorants, although much research exists on attractant odorants. In our study, we tested Pacific lamprey response to …

Carnivore Diet Identification Through Scat And Genetic Analysis In Namibia, Africa, Alicia J. Walsh

Honors Theses and Capstones

Worldwide the cheetah population is declining making them Africa’s most endangered large cat. Namibia, Africa currently has the largest population of cheetahs in the world. During the summer of 2014, I did scat analysis of carnivores on the property of the Cheetah Conservation Fund (CCF) in Namibia in order to better understand the predators that compete with the cheetah and how the ecosystem works as a whole. I worked at CCF for nine weeks to analyze the diets of carnivores in the area through genetic and scat analysis. Analyzing carnivore feces would ultimately identify the diet of various carnivores in …