Biodiversity Commons^™

A Global Agenda For Advancing Freshwater Biodiversity Research, Alain Maasri, Sonja C. Jähnig, Hendrik Freitag, 93 Co-Authors

Biology Faculty Publications

Global freshwater biodiversity is declining dramatically, and meeting the challenges of this crisis requires bold goals and the mobilisation of substantial resources. While the reasons are varied, investments in both research and conservation of freshwater biodiversity lag far behind those in the terrestrial and marine realms. Inspired by a global consultation, we identify 15 pressing priority needs, grouped into five research areas, in an effort to support informed stewardship of freshwater biodiversity. The proposed agenda aims to advance freshwater biodiversity research globally as a critical step in improving coordinated actions towards its sustainable management and conservation.

Dna Barcoding Enhances Large-Scale Biodiversity Initiatives For Deep-Pelagic Crustaceans Within The Gulf Of Mexico And Adjacent Waters, Carlos Varela

FIU Electronic Theses and Dissertations

In this dissertation I investigate the biodiversity of marine deep-water crustaceans of the Gulf of Mexico and adjacent waters, focusing on pelagic crustaceans. Taxonomic and molecular techniques were utilized to document adult and larval crustacean specimens to better under their taxonomy, life history, evolutionary relationships and cryptic biodiversity. The use of molecular techniques to study organisms from habitats with limited accessibility provides tremendous potential. With prevalent anthropogenic threats and the delicate nature of deep-water habitats, the need to improve our understanding of these systems is clear. Molecular techniques can act as a fundamental tool to complement traditional taxonomy. The application …

Passive Acoustic Monitoring And Automatic Detection Of Diel Patterns And Acoustic Structure Of Howler Monkey Roars, Leandro A. Do Nascimento, Cristian Pérez-Granados, Karen H. Beard

Wildland Resources Faculty Publications

Nighttime studies are underrepresented in ecological research. Even well-known behaviors, such as the loud call of howler monkeys, are rarely studied at night. Our goal was to help fill this knowledge gap by studying the 24 h vocal behavior of the Guianan red howler monkey (Alouatta macconnelli) and to compare the acoustic structures of howling bouts made during the day to those made at night. We used passive acoustic monitoring coupled with automatic acoustic detection to study three groups of howlers over three months in the Viruá National Park, Roraima, Brazil. The automatic classifier we built detected 171 …

Overfishing Drives Over One-Third Of All Sharks And Rays Toward A Global Extinction Crisis, Nicholas K. Dulvy, Nathan Pacoureau, Cassandra L. Rigby, Riley A. Pollom, Rima W. Jabado, David A. Ebert, Brittany Finucci, Caroline M. Pollock, Jessica Cheok, Danielle H. Derrick, Katelyn B. Herman, C. Samantha Sherman, Wade J. Vanderwright, Julia M. Lawson, Rachel H.L. Walls, John K. Carlson, Patricia Charvet, Kinattumkara K. Bineesh, Daniel Fernando, Gina M. Ralph, Jay H. Matsushiba, Craig Hilton-Taylor, Sonja V. Fordham, Colin A. Simpfendorfer

Biological Sciences Faculty Publications

The scale and drivers of marine biodiversity loss are being revealed by the International Union for Conservation of Nature (IUCN) Red List assessment process. We present the first global reassessment of 1,199 species in Class Chondrichthyes-sharks, rays, and chimeras. The first global assessment (in 2014) concluded that one-quarter (24%) of species were threatened. Now, 391 (32.6%) species are threatened with extinction. When this percentage of threat is applied to Data Deficient species, more than one-third (37.5%) of chondrichthyans are estimated to be threatened, with much of this change resulting from new information. Three species are Critically Endangered (Possibly Extinct), representing …

Invasion Genetics Of The Non-Native Geckos Phelsuma Grandis Gray 1870 And Gekko Gecko (Linnaeus 1758) In Southern Florida, Usa, Thomas William Fieldsend

FIU Electronic Theses and Dissertations

Biological invasions cause tremendous damage to ecosystems, economies, and human livelihoods worldwide. Florida is home to more established non-native species of reptiles and amphibians than anywhere else on Earth, many of which cause substantial harm to native biodiversity and human well-being. The relatively new discipline of invasion genetics promises to significantly improve the understanding, prediction, prevention, and management of biological invasions. The purpose of this dissertation is to utilize invasion genetics techniques to further understanding of the patterns and processes of biological invasions, especially as they pertain to Florida’s destructive and diverse non-native squamate reptile assemblage. In the first phase …

Natterer In Neotropical Nematoda: Species Described By Rudolphi, Diesing, And Molin, Ricardo Guerrero

MANTER: Journal of Parasite Biodiversity

Between 1817 and 1835 Johann Natterer collected 1,729 samples of endoparasitic helminths in Brazil and southern Venezuela. Of the 323 names that were assigned to the collected nematode specimens, 163 are still valid and accepted species, 84 are still doubtful, and 76 must be rejected. In this work, each name is analyzed and correlated to the literature to clarify its taxonomic status.

The purpose of this review of the material collected by Natterer is to establish a complete list of all described species; their current status; and whether they are valid species, synonyms, or nomen nudum as well as to …

Diversity Of Tetrabothriidae (Eucestoda) Among Holarctic Alcidae (Charadriiformes): Resolution Of The Tetrabothrius Jagerskioeldi Cryptic Species Complex: Cestodes Of Alcinae—Provides Insights On The Dynamic Nature Of Tapeworm And Marine Bird Faunas Under The Stockholm Paradigm, Eric P. Hoberg, Kaylen Marie Soudachanh

MANTER: Journal of Parasite Biodiversity

We begin resolution of the Tetrabothrius jagerskioeldi–species complex with descriptions of Tetrabothrius alcae n. sp. based on numerous specimens, primarily in murres (species of Uria), from the greater North Pacific basin and Tetrabothrius sinistralis n. sp. based on cestodes in guillemots (species of Cepphus) from the central Bering Sea and West Greenland. These tetrabothriids are characterized, among 44 species of Tetrabothrius in avian hosts, by attributes of the scolex, male and female organ systems, structure and dimensions of the vitelline gland, numbers of testes, configuration of the genital atrium, genital papillae and the male and female atrial …

Free-Ranging And Feral Cats, Alex Dutcher, Kyle Pias, Grant Sizemore, Stephen M. Vantassel

Wildlife Damage Management Technical Series

Domestic cats (Felis catus) are a common household pet in the United States, with an estimated 25.4% of households owning cats (American Veterinary Medical Association 2018). While an increasing number of cat owners keep their pet cats exclusively indoors, a portion of society maintains that domestic cats are entitled to a free-ranging lifestyle and may even consider unowned domestic cats to be wildlife. Although wildlife managers recognize the beliefs of many concerned stakeholders, including advocates who use strong emotional appeals on behalf of cats, it remains that free-ranging and feral domestic cats are an invasive species spread by humans (Lowe …

Investigating The Impact Of Land Use On Avian Diversity And Abundance In Areas Surrounding Mabamba Swamp, Uganda, Sydney Marie Jones

Independent Study Project (ISP) Collection

The primary objective of this study was to investigate the impact of wetland-adjacent land use on avian species richness and abundance areas surrounding Mabamba Swamp, Uganda. Four types of land use were investigated: Eucalyptus plantations, wetland-edge agricultural fields, residential areas, and mature secondary forests. A total of 40-morning point counts were conducted for ten days in late November and late December of 2021. One-way ANOVA tests and Tukey’s HSD tests revealed significant differences in mean avian richness and abundance between all sites except residential areas and Nkima Forest. Additionally, Nkima Forest was found to contain the most number of specialist …

Man V.S. Wild: An Analysis Of Language Used Regarding Human-Wildlife Conflict In The Kibale National Park Community, Western Region, Uganda, Sophie Perfetto

Independent Study Project (ISP) Collection

If humans are to live sustainably and in harmony with wildlife in the vicinity of Protected Areas, policy makers, and government authorities need to make informed decisions with consideration to the needs of local communities. For this to happen, policy makers must understand the perceptions of local communities and take local perspectives into account. As language is at the root of perception, language was studied in the context of its role in shaping local perceptions of human-wildlife conflict and consequential conflict mitigation strategies. Six communities around the Northern region of Kibale National Park, Uganda, were studied, with sites located in …

Abundance, Foraging Levels, And Dietary Preferences Of Chaetodon Capistratus On Reefs Surrounding Porvenir Island In The Guna Yala Comarca Of Panamá, Eleanor Ann Casement

Independent Study Project (ISP) Collection

Reef fish are a physically and functionally diverse group of organisms that live in close association with coral reef habitats. Chaetodontidae represents the most species rich family of corallivorous fish, and their reliance on corals as food resources has led to their designation as indicator species of coral cover and health. However, the majority of research on the foraging ecology of Caribbean Chaetodontids dates back several decades, and therefore does not account for recent changes in coral community composition as the result of disease, climate change, and other stressors. As the novel and deadly stony coral tissue loss disease (SCTLD) …

A Ladder Of Endemicity: A Pioneering Study Of Anuran Communities Along An Elevational Gradient In The Eastern Andean Cloud Forests, Ecuador, Ella Halbert

Independent Study Project (ISP) Collection

Per unit of area, Ecuador is home to the most herpetofauna of any region on Earth, yet many ecosystems are under researched. Positioned between the Eastern Andes and the Amazon rainforest, the Río Pastaza Basin of Ecuador has been the recent focus of anuran biodiversity surveys and is home to many endemic species. This study aimed to determine how the anuran community composition of a vertical transect in the Llanganates National Park varied between elevations. A 7-day expedition was conducted along a new trail up Abitagua Range spanning 1,050 m in elevation. Each night, visual encounter surveys were employed to …

Bird Diversity In The Ecuadorian Chocó: A Proposal For Avitourism In Villaflora And Manduriacu Reserve, Elizabeth Kroger

Independent Study Project (ISP) Collection

Ecuador is rich in avifauna, and the Chocó bioregion of Northwestern Ecuador is a hotspot for bird endemism and diversity. However, many rare and beautiful species are threatened by human activities such as logging and mining. It is essential that communities are able to find alternative solutions that bring economic benefits and improve public health. Avitourism is an economically beneficial and environmentally friendly solution. This study examined avifaunal biodiversity in Villaflora and Manduriacu Reserve, a small town in the cloud forest of the Chocó region. Point counts on pre-existing trails were used to assess bird communities as well as search …

Otoliths Of South-Western Australian Fish: A Photographic Catalogue, Chris Dowling, Kim Smith, Elain Lek, Joshua Brown

Fisheries research reports

Due to the species-specific nature of otoliths and given they are often the only part of the fish preserved when fish die, otolith catalogues can be used in numerous applications, such as diet studies in fish eating animals, including pinnipeds, fish and sea birds; archaeological purposes such as reconstructing indigenous people’s diets from otoliths found in middens or evolutionary history of fish species by comparing fossilized otoliths. Given the unique mixture of subtropical and temperate fish, including many endemic species that occur off the southwest corner of WA having a catalogue for this area is extremely important for people working …

James Davidson Fawcett (1933–2020): Imbibing With The Kiwi., Louis A. Somma

Papers in Herpetology

An obituary and summary of the life of James D. Fawcett (1933-2020), herpetologist and instructor and professor of Biology at University of Nebraska at Omaha 1972-2015. Includes bibliography of his works, list of master's theses chaired, and recollections of former students.

Gray Wolves, Eric Gese, John P. Hart, Patricia Terletzky

Wildlife Damage Management Technical Series

Wolf conflicts are primarily related to predation on livestock, pets and other domestic animals, as well as their direct and indirect impacts on native ungulates (i.e., big game). Economic losses vary widely with some livestock producers facing high levels of depredation in some areas. This publication focuses on wolf ecology, damage, and management, particularly as it relates to wolf depredation on livestock and other conflicts with people.

Wolves and people share the same environments more than people realize. In the U.S., wolves are not confined to wilderness areas. Though curious, wolves generally fear people and rarely pose a threat to …

Vignette 08: Connection To Place: Indigenous Leadership In Səlilwət (Burrard Inlet), Tsleil-Waututh Nation’S Treaty Lands And Resources Department

Institute Publications

Since time out of mind, Tsleil-Waututh have used and occupied Burrard Inlet and surrounding watersheds. Generations of Tsleil-Waututh people were brought up with the teaching, “When the tide went out, the table was set.” About 90% of our diet was once derived from Burrard Inlet and the Fraser River, but today the Inlet is unable to support our needs. Cumulative effects of colonial settlement and development have eroded the ecological health, integrity, and diversity of the Inlet. Tsleil-Waututh Nation (TWN) has a goal to restore the health of the Inlet so that we, and future generations of Tsleil-Waututh People, can …

Vignette 04: Olympia Oysters, Jodie Toft, Betsy Peabody

Institute Publications

Olympia oysters (Ostrea lurida) are our only native oyster species here in the Salish Sea. Olympia oysters once covered an estimated 13-26% of the intertidal area in Puget Sound, mostly near the heads of inlets. A combination of overharvest, pollution, and habitat loss reduced the current population to less than 4% of historic numbers, though sparse numbers of Olympia oysters can still be found throughout most of their historic distribution. Looking to the future, as our region’s marine waters experience effects of climate change and ocean acidification (OA), native species such as the Olympia oyster may prove to …

Vignette 14: Eelgrass Wasting Disease, Olivia Graham, Morgan Eisenlord, Drew Harvell

Institute Publications

Rising seawater temperatures can increase the risk of disease outbreaks in many taxa. Pathogens are potentially the ultimate keystone species in that their small biomass can have massive impacts that ripple through ecosystems. Disease outbreaks can be particularly damaging when they affect ecosystem engineers, such as seagrasses. Outbreaks of wasting disease in seagrasses are one of a myriad of stressors associated with declining temperate and tropical seagrass meadows around the globe. Levels of eelgrass wasting disease are high in the San Juan Islands and Puget Sound. These increasing levels of disease are a threat to sustainability of eelgrass meadows, our …

Vignette 05: Blocking Culverts Impact Salmonid Survival, Northwest Indian Fisheries Commission

Institute Publications

During the first six years of implementing the U.S. v. Washington culvert case injunction, the State of Washington has corrected 150 fish-blocking culverts in the Puget Sound Region. At the current rate, if additional support is not gained, the corrections of the remaining 799 culverts would be completed in 32 years or the year 2052.

Vignette 19: Invasive European Green Crab, Jeff Adams, Emily Grason, P. Sean Mcdonald, Allen Pleus, Jude Apple, Roger Fuller, Lucas Hart, Alexandra Simpson

Institute Publications

European green crab pose documented threats to cultured and wild shellfish, eelgrass, and shoreline habitats and ecosystems. Because they can prey on juvenile crabs and shellfish, dense populations of EGC in the Salish Sea region could put fisheries and aquaculture resources in peril. After Fisheries and Oceans Canada researchers reported an established EGC population in Sooke Basin, BC in 2012, the Washington Department of Fish and Wildlife (WDFW) worked with Washington Sea Grant (WSG) to secure Puget Sound Marine and Nearshore Grant Program funding and establish a volunteer-based early detection and monitoring program. WSG launched Crab Team in 2015 with …

Vignette 23: Indigenous Management Systems Can Promote More Sustainable Salmon Fisheries In The Salish Sea, William I. Atlas, Natalie C. Ban, Jonathan W. Moore, Adrian M. Tuohy, Spencer Greening, Andrea J. Reid, Nicole Morven, Elroy White, William G. Housty, Jess A. Housty, Christina N. Service, Larry Greba, Sam Harrison, Katherine Ir Butts, Elissa Sweeney-Bergen, Donna Macintyre, Matthew R. Sloat, Katrina Connors

Institute Publications

Indigenous peoples of the Northern Pacific Rim have harvested salmon for more than 10,000 years, and Pacific salmon (Oncorhynchus spp.) form the foundation of social-ecological systems encompassing communities from California to Kamchatka and Northern Japan. Through continuous placed-based interdependence with salmon, Indigenous societies formed deliberate and well-honed systems of salmon management. These systems promoted the sustained productivity of salmon fisheries. In Canada and the United States, Indigenous sovereignty and resource stewardship were forcibly disrupted by colonial government authority. Despite the destructive impacts of colonization, Indigenous culture and knowledge are resurgent in Canada and the United States. Indigenous fishing technologies and …

Seasonal Plumage Condition Variation And The Thermal Value Of The Feather Coats Of House Sparrows (Passer Domesticus), Jordana Mf Graveley, Margaret Rubega, Kevin R. Burgio

Honors Scholar Theses

Feathers are critical to how birds thermoregulate, and thus their total energy balance. The feather coat insulates birds by trapping air next to the skin and acting as a physical barrier to heat loss. Despite previous work studying thermal balance in birds, relatively few studies have focused on the thermal contribution of the feather coat alone; most studies have focused on physiological and behavioral responses. Moreover, to our knowledge, no studies have directly measured the effect of feather wear through the annual cycle on the thermal performance of the feather coat. To address this, we used a thermal camera to …

A Guide To Helminth Parasites Reported From Shorebirds (Charadriidae) From The Americas, Albert G. Canaris, Sofia Capasso, Gay J. Canaris

MANTER: Journal of Parasite Biodiversity

The shorebird family Charadriidae in the Americas consists of 21 native and 7 vagrant species. Members of the family occupy a diversity of open habitats, ranging from Arctic tundra during nesting, coastal sands, and mudflats to inland prairies, savannas, and wetlands. Some native plovers migrate from nesting grounds in North America to wintering grounds in South America (Hayman et al., 1986; Paulson, 2005; Winkler et al., 2020). Our search of the literature revealed the following: 17 of 28 host species infected with helminth parasites, 153 helminth species, and 199 infections involving 13 geographic areas. The purpose of this guide is …

Impact Of Whitetail Deer Overpopulation With Hunting On The Decline, Matthew J. Lamprinos

English Department: Research for Change - Wicked Problems in Our World

The whitetail deer is a key species for Pennsylvania’s forests, but their ecological balance has been disturbed by unregulated growth and urban sprawl. The deer population in Pennsylvania has exploded since the 1880’s causing a wide range of damage on the ecosystem, and humans. To reduce deer populations to sustainable levels, the Pennsylvania Game Commission relies heavily on hunters to dedicate time in the fall to go out and fill the tags the they issue. Hunter participation all around the world is decreasing for a variety of reasons. Fewer hunters out in the field causes revenue losses for the Game …

The Insular Herpetofauna Of Mexico: Composition, Conservation, And Biogeographic Patterns, Juan Valentín Pliego‐Sánchez, Christopher Blair, Aníbal H. Díaz De La Vega‐Pérez, Víctor H. Jiménez‐Arcos

Publications and Research

We compile a Mexican insular herpetofaunal checklist to estimate endemism, conservation status, island threats, net taxonomic turnover among six biogeographic provinces belonging to the Nearctic and Neotropical regions, and the relationships between island area and mainland distance versus species richness. We compile a checklist of insular herpetofaunal through performing a literature and collection review. We define the conservation status according to conservation Mexican law, the Red List of International Union for Conservation of Nature, and Environmental Vulnerability Scores. We determine threat percentages on islands according to the 11 major classes of threats to biodiversity. We estimate the net taxonomic turnover …

Ecological Impacts Of Apiaries, Lewis University

Come Clean, Go Green Competition

The Come Clean, Go Green competition is a program dedicated to making Lewis a more sustainable campus with ideas from Lewis Students across all disciplines. The program is sponsored by the Lewis University Sustainability Council and supported by, the sustainability fee, which was approved last year. The fee will fund the implementation of sustainability projects on campus that are chosen by students.

Monitoring For Wolves, Jeff Hansen, Cat Urbigkit

Wildlife Damage Management Technical Series

Gray wolves (Canis lupus) and Mexican wolves (Canis lupus baileyi) once again roam across landscapes where they have been absent for decades (Figure 1). With wolf range expansion comes increased opportunities for conflicts when wolves harass or prey on domestic livestock or other animals. Wolves have relatively high reproductive and dispersal rates but detecting individual animals in low-density populations is difficult without a concerted monitoring effort. In fact, wolf presence in an area often is not known until there is a confirmed livestock depredation. Ranchers and wildlife damage management experts need not wait for livestock depredations to occur before wolves …

Observations On The Distribution And Status Of Selected Nebraska Mammals, Zachary P. Roehrs, Russell A. Benedict, Thomas E. Labedz, Hugh H. Genoways

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Information on the distribution and current status of 25 species or subspecies of mammals occurring in Nebraska are presented. The species covered include one shrew, an armadillo, eight bats, 10 rodents (including two subspecies of one species), three carnivores, and one artiodactyl. Distributional information reported includes the first state record for one species (Sorex nanus) and new county records for 18 species. In Nebraska, we know that mammals are shifting their geographic ranges with some extending populations into the state, whereas others are expanding their geographic ranges within the state. The current status of six additional mammalian taxa …

The Tijeras Pueblo (La 581) Archaeofaunal Project, Emily Lena Jones, Scott Kirk, Caitlin S. Ainsworth, Asia Alsgaard, Jana Valesca Meyer, Cyler Conrad

Anthropology Datasets

These files contain data generated by the Tijeras Pueblo (LA 581) Archaeofaunal Project, a project of the University of New Mexico Department of Anthropology Zooarchaeology Laboratory between 2011 and the present. This project has been supported in part by the National Science Foundation under Grant No. 1732622 and by a grant from the Research Allocations Committee of the University of New Mexico.

These data are the basis of the analyses presented in the following publication:

Jones, Emily Lena, Scott Kirk, Caitlin S. Ainsworth, Asia Alsgaard, Jana Valesca Meyer, and Cyler Conrad. 2021. The Community at the Crossroads: Artiodactyl Exploitation and …