Biodiversity Commons^™

Relationships Among Biodiversity Dimensions Of Birds In Nebraska, Nadejda Mirochnitchenko

School of Natural Resources: Dissertations, Theses, and Student Research

Biological diversity, or biodiversity, is a multi-dimensional concept that can be decomposed to measure information about taxonomic, phylogenetic, and functional variation within communities. Although the dimensions of biodiversity are interrelated, the assumption that measuring one dimension of diversity can inform about patterns in another dimension does not necessarily follow from theory or empirical study. The relationships among biodiversity dimensions is not well understood, nor how differences among dimensions could influence conservation decision making. Using the avian community as a study system, we explored the relationships of breadth metrics from the taxonomic, phylogenetic, and functional dimensions among each other and across …

Safety, Stephen M. Vantassel, Brenda K. Osthus

Wildlife Damage Management Technical Series

Wildlife damage management (WDM) is an exciting field with many opportunities to provide solutions to the complex issues involved in human-wildlife interactions. In addition, WDM wildlife control operators (WCO) face a variety of threats to their physical well-being. Injuries can result from misused (Figure 1), faulty, or poorly maintained equipment, inexperience, mishandled wildlife, harsh weather, and dangerous situations, such as electrical lines. The goals of this publication are to: * Develop an awareness of safety issues and adopt a mindset of “Safety First”, * Review the major safety threats that WCOs face, * Provide basic information for WCOs to protect …

Implications Of Spatially Variable Costs And Habitat Conversion Risk In Landscape-Scale Conservation Planning, Max Post Van Der Burg, Neil Chartier, Ryan Drum

USGS Northern Prairie Wildlife Research Center

‘‘Strategic habitat conservation’’ refers to a process used by the U.S. Fish and Wildlife Service to develop cost-efficient strategies for conserving wildlife populations and their habitats. Strategic habitat conservation focuses on resolving uncertainties surrounding habitat conservation to meet specific wildlife population objectives (i.e., targets) and developing tools to guide where conservation actions should be focused on the landscape. Although there are examples of using optimization models to highlight where conservation should be delivered, such methods often do not explicitly account for spatial variation in the costs of conservation actions. Furthermore, many planning approaches assume that habitat protection is a preferred …

Prairie Reconstruction Unpredictability And Complexity: What Is The Rate Of Reconstruction Failures?, Jack E. Norland, Cami Dixon, Diane Larson, Kristine Askerooth, Benjamin A. Geaumont

USGS Northern Prairie Wildlife Research Center

The outcomes of prairie reconstructions are subject to both unpredictability and complexity. Prairie, tallgrass, and mixed grass reconstruction is defined as the planting of a native herbaceous seed mixture composed of multiple prairie species (10 or more) in an area where the land has been heavily cultivated or anthropogenically disturbed. Because of the unpredictability and complexity inherent in reconstructions, some outcomes end up being failures dominated by exotic species. We propose that these failures follow a fat-tailed distribution as found in other complex systems. Fat-tailed distributions follow the Pareto principle, where 80% of the time reconstructions work as expected but …

Bats Of Saint Lucia, Lesser Antilles, Scott C. Pedersen, Gary G. Kwiecinski, Hugh H. Genoways, Roxanne J. Larsen, Peter A. Larsen, Carleton J. Phillips, Robert J. Baker

University of Nebraska State Museum: Mammalogy Papers

Eight species of bat have been previously recorded from the island of Saint Lucia: Noctilio leporinus, Monophyllus plethodon, Artibeus jamaicensis, Brachyphylla cavernarum, Ardops nichollsi, Sturnira paulsoni, Molossus molossus, and Tadarida brasiliensis. Herein, we add a ninth species to the fauna—Pteronotus davyi. These nine species represent nine genera from four families: Noctilionidae, Mormoopidae, Phyllostomidae, and Molossidae. This fauna includes four trophic guilds: N. leporinus (piscivore/insectivore), M. plethodon (nectarivore/pollenivore), A. jamaicensis × schwartzi, B. cavernarum, A. nichollsi, and S. paulsoni (frugivores), and P. davyi, M. molossus, and …

Cryptic Diversity In The Mexican Highlands: Thousands Of Uce Loci Help Illuminate Phylogenetic Relationships, Species Limits And Divergence Times Of Montane Rattlesnakes (Viperidae: Crotalus ), Christopher Blair, Robert W. Bryson Jr, Charles W. Linkem, David Lazcano, John Klicka, John E. Mccormack

Publications and Research

With the continued adoption of genome‐scale data in evolutionary biology comes the challenge of adequately harnessing the information to make accurate phylogenetic inferences. Coalescent‐based methods of species tree inference have become common, and concatenation has been shown in simulation to perform well, particularly when levels of incomplete lineage sorting are low. However, simulation conditions are often overly simplistic, leaving empiricists with uncertainty regarding analytical tools. We use a large ultraconserved element data set (>3,000 loci) from rattlesnakes of the Crotalus triseriatus group to delimit lineages and estimate species trees using concatenation and several coalescent‐based methods. Unpartitioned and partitioned maximum …

13 Terrestrial Wetlands, Randall Kolka, Carl T Trettin

USGS Northern Prairie Wildlife Research Center

The objective of this chapter is to characterize the distribution of carbon stocks and fluxes in terrestrial wetlands within North America. The approach was to synthesize available literature from field measurements with analyses of resource inventory data to estimate wetland area, carbon stocks, and net ecosystem exchange (NEE) of carbon and methane (CH4) fluxes of terrestrial wetlands (see Appendices 13A, p. 547, and 13B, p. 557, for details1). Then, the findings employed from large-scale simulation studies provided additional context, with consideration given to the effects of disturbance regimes, restoration and creation of terrestrial wetlands, and the application of modeling tools …

Museum Metabarcoding: A Novel Method Revealing Gut Helminth Communities Of Small Mammals Across Space And Time, Stephen E. Greiman, Joseph A. Cook, Vasyl V. Tkach, Eric P. Hoberg, Damian M. Menning, Andrew G. Hope, Sarah A. Sonsthagen, Sandra L. Talbot

Harold W. Manter Laboratory of Parasitology: Faculty and Staff Publications

Natural history collections spanning multiple decades provide fundamental historical baselines to measure and understand changing biodiversity. New technologies such as next generation DNA sequencing have considerably increased the potential of museum specimens to address significant questions regarding the impact of environmental changes on host and parasite/pathogen dynamics. We developed a new technique to identify intestinal helminth parasites and applied it to shrews (Eulipotyphla: Soricidae) because they are ubiquitous, occupy diverse habitats, and host a diverse and abundant parasite fauna. Notably, we included museum specimens preserved in various ways to explore the efficacy of using metabarcoding analyses that may enable identification …

Landscape Genetics Reveal Broad And Fine‐Scale Population Structure Due To Landscape Features And Climate History In The Northern Leopard Frog (Rana Pipiens) In North Dakota, Justin M. Waraniak, Justin D. L. Fisher, Kevin Purcell, David M. Mushet, Craig A. Stockwell

USGS Northern Prairie Wildlife Research Center

Prehistoric climate and landscape features play large roles structuring wildlife populations. The amphibians of the northern Great Plains of North America present an opportunity to investigate how these factors affect colonization, migration, and current population genetic structure. This study used 11 microsatellite loci to genotype 1,230 northern leopard frogs (Rana pipiens) from 41 wetlands (30 samples/wetland) across North Dakota. Genetic structure of the sampled frogs was evaluated using Bayesian and multivariate clustering methods. All analyses produced concordant results, identifying a major east–west split between two R. pipiens population clusters separated by the Missouri River. Substructuring within the two major identified …

Landscape Genetics Reveal Broad And Fine‐Scale Population Structure Due To Landscape Features And Climate History In The Northern Leopard Frog (Rana Pipiens) In North Dakota, Justin M. Waraniak, Justin D.L. Fisher, Kevin Purcell, David M. Mushet, Craig A. Stockwell

USGS Northern Prairie Wildlife Research Center

Prehistoric climate and landscape features play large roles structuring wildlife populations. The amphibians of the northern Great Plains of North America present an opportunity to investigate how these factors affect colonization, migration, and current population genetic structure. This study used 11 microsatellite loci to genotype 1,230 northern leopard frogs (Rana pipiens) from 41 wetlands (30 samples/wetland) across North Dakota. Genetic structure of the sampled frogs was evaluated using Bayesian and multivariate clustering methods. All analyses produced concordant results, identifying a major east–west split between two R. pipiens population clusters separated by the Missouri River. Substructuring within the two major identified …

Multi-Element Fingerprinting Of Waters To Evaluate Connectivity Among Depressional Wetlands, Yuxiang Yuan, Xiaoyan Zhu, David M. Mushet, Marinus L. Otte

USGS Northern Prairie Wildlife Research Center

Establishing the connectivity among depressional wetlands is important for their proper management, conservation and restoration. In this study, the concentrations of 38 elements in surface water and porewater of depressional wetlands were investigated to determine chemical and hydrological connectivity of three hydrological types: recharge, flow-through, and discharge, in the Prairie Pothole Region of North America. Most element concentrations of porewater varied significantly by wetland hydrologic type (p < 0.05), and increased along a recharge to discharge hydrologic gradient. Significant spatial variation of element concentrations in surface water was observed in discharge wetlands. Generally, higher element concentrations occurred in natural wetlands compared to wetlands with known disturbances (previous drainage and grazing). Electrical conductivity explained 42.3% and 30.5% of the variation of all element concentrations in porewater and surface water. Non-metric multidimensional scaling analysis showed that the similarity decreased from recharge to flowthrough to discharge wetland in each sampling site. Cluster analysis confirmed that element compositions in porewater of interconnected wetlands were more similar to each other than to those of wetlands located farther away. Porewater and surface water in a restored wetland showed similar multi-element characteristics to natural wetlands. In contrast, depressional wetlands connected by seeps along a deactivated drain-tile path and a grazed wetland showed distinctly different multi-element characteristics compared to other wetlands sampled. Our findings confirm that the multi-element fingerprinting method can be useful for assessing hydro-chemical connectivity across the landscape, and indicate that element concentrations are not only affected by land use, but also by hydrological characteristics.

Checklist Of Bloodfeeding Mites (Acari: Spinturnicidae) From The Wings Of Bats (Mammalia: Chiroptera) In The Manú Biosphere Reserve, Peru, Donald D. Gettinger

MANTER: Journal of Parasite Biodiversity

A survey collection of mites of the family Spinturnicidae from Peruvian bats includes 11 species of Periglischrus (acutisternus, gameroi, grandisoma, herrerai, hopkinsi, iheringi, micronycteridis, ojasti, paracutisternus, paravargasi, and ramirezi) and 2 Spinturnix (americanus and bakeri); almost all represent new locality records. This survey collection is available for further study at the following repositories: The Harold W. Manter Laboratory of Parasitology, University of Nebraska–Lincoln; the Field Museum of Natural History, Chicago; and the Laboratório de Espeleobiologia y Acarologia, Universidad Nacional Autónoma de México. When spinturnicid mites are …

Expanding Instream Flows To Protect Ecosystems In Overallocated River Basins, Belize A. Lane, David E. Rosenberg

Reports

Utahns are expressing a rapidly growing interest in protecting and enhancing instream flows for outdoor recreation and environmental benefits (Endter-Wada et al. 2015). However, many Utah rivers are already over-allocated for agricultural, municipal, hydropower and other water uses, making it difficult to procure additional water for instream flows. ‘Use it or lose it’ western water law and mentality encourages Utahns to use water rather than return it to rivers and ecosystems.

This briefing reviews existing instream flow practices allowed by the Utah water rights system and the challenges to implementation. We suggest key technical and legislative opportunities within and outside …

Fish Diversity And Distribution In The Seagrass-Coral Reef Continuum At Two Sites Off The Western Coast Of Isla Bastimentos, Bocas Del Toro, Panama, Kathy Liu

Independent Study Project (ISP) Collection

Coral reefs are the most diverse marine ecosystem and the largest biogenic structure on Earth. They serve as shelter for many reef fishes and are a food source for resident and visiting fish species. In the tropics, coral reefs are often in close proximity to seagrass beds and the two contiguous marine habitats are not only highly interconnected but also highly understudied. The seagrass-coral reef continuum offers a wide array of services to human society as well as to various life stages of reef fishes resulting in diel, temporal, or yearly migrations of fish between the two habitats. Tropical reef …

Large Mammals Of The High Andes A Survey Of Community Composition And Habitat Usage In The Highlands Of Angochagua, Sage Fox

Independent Study Project (ISP) Collection

The large mammal community of the high Andes may be the least understood in South America. It contains multiple threatened and charismatic species including the Andean Bear, Mountain Tapir, Red Brocket Deer, Northern Pudu, and Puma. Many of these species are lacking in distribution and population data. The highlands of the Parroquia de Angochagua were once overgrazed by livestock, but have been mostly restored over the last 20 years through conservation efforts by the local community. These highlands are thought to have populations of all the previously mentioned species, though they had not been surveyed before this study. Transect surveys …

Acarine Biodiversity In Ecuador: Two New Species Of Endoparasitic Chiggers (Acarina: Trombiculidae) From Terrestrial Andean Anurans, Ricardo Guerrero, Mario Humberto Yánez-Muñoz

MANTER: Journal of Parasite Biodiversity

Two species of endoparasitic chiggers, Vercammenia neotropica n. sp. and Microtrombicula ecuadorensis n. sp., are described, both found in terrestrial anurans of the genus Pristimantis collected in the Andes of Ecuador. A new combination is proposed for Trombicula yorkei Sambon, 1928 as Microtrombicula yorkei (Sambon, 1928) n. comb., and Schoengastia lynni Ewing, 1942 is placed as incertae sedis. This is the first record of species of the genus Vercammenia in the Neotropical region.

Resumen

Dos especies de ácaros endoparásitos, Vercammenia neotropica n. sp. y Microtrombicula ecuadorensis n. sp., son descritas, ambas encontradas en anuros terrestres del género Pristimantis …

Biodiversity And Conservation Study Of The St. Norbert Abbey, De Pere, Wisconsin - 2017 Annual Report, Mikaela Nowak, Mackenzie Hennes, Adam L. Brandt

Student Creative and Scholarly Works

Long term biological studies are rare but incredibly valuable for examining natural phenomena. Data collected over many years or decades allows for analyses of trends that would never be apparent in a single season. The research presented here is for the completion of the first field season in a long term study analyzing biodiversity trends at the St. Norbert Abbey. Using visual searches, live trapping, and trail cameras, the biodiversity and abundance of species was examined. Special emphasis was placed on small mammals, though other species were observed and documented. The goals of this project were to (1) provide preliminary …

The Usefulness Of Gps Telemetry To Study Wolf Circadian And Social Activity, Samuel B. Merrill, L. David Mech

USGS Northern Prairie Wildlife Research Center

This study describes circadian and social movement patterns of 9 wolves and illustrates capabilities and limitations of Global Positioning System (GPS) telemetry for analysis of animal activity patterns. Wolves were studied at the Camp Ripley National Guard Training Site in Little Falls, Minnesota, and were captured via helicopter net-gunning. All study wolves showed nocturnal movement patterns regardless of time of year. One wolf's movement pattern switched to diurnal when he conducted an extraterritorial foray from his natal territory. All data sets with GPS intervals <1 hour (n=4) showed crepuscular movement peaks. We identified patterns of den visitation and attendance, estimated minimum distances traveled and minimum rates of movement, and observed that GPS location intervals may affect perceived rates of wolf travel. Global Positioning System telemetry was useful in determining when pack members were traveling together or apart and how long a breeding female wolf spent near her pups (e.g., 0-month-old pups were left unattended by their mother for as long as 17 days).

Biodiversity And Conservation Study Of Chambers Island, Wisconsin - 2017 Annual Report, Mackenzie Hennes, Mikaela Nowak, Adam L. Brandt

Student Creative and Scholarly Works

Long term biological studies are rare but incredibly valuable for examining natural phenomena. Data collected over many years or decades allows for analyses of trends that would never be apparent in a single season. The research presented here is for the completion of the first field season in a long term study analyzing biodiversity trends on Chambers Island. Using visual searches, live trapping, and trail cameras, the biodiversity and abundance of species was examined. Special emphasis was placed on small mammals, though other species were observed and documented. The goals of this project were to (1) provide preliminary diversity and …

Wildlife Translocation, Michael T. Mengak

Wildlife Damage Management Technical Series

Many people enjoy wildlife. It enriches their lives in many ways. Nationwide, Americans spend over $144 billion annually on fishing, hunting, and wildlife-watching activities. However, wildlife is not always welcome in or near homes, buildings, or other property and can cause significant damage or health and safety issues (Figure 1). In one study, 42% of urban residents reported experiencing a wildlife problem during the previous year and more than half of them said their attempts to resolve the problem were unsuccessful. Many people who experience a wildlife conflict prefer to resolve the issue without harming the offending animal. Of the …

Wildlife Carcass Disposal, Stephen M. Vantassel, Mark A. King

Wildlife Damage Management Technical Series

Many wildlife management situations require the disposal of animal carcasses. These can include the lethal removal of wildlife to resolve damage or conflicts, as well as clean-up after mortalities caused by vehicle collisions, disease, oil spills (Figure 1) or other natural disasters. Carcasses must be disposed of properly to protect public sensitivities, the environment, and public health. Improper disposal of carcasses can result in public outrage, site contamination, injury to animals and people, and the attraction of other animals that may lead to wildlife damage issues. Concern over ground water contamination and disease transmission from improper carcass disposal has resulted …

Rivoli's Hummingbird: Eugenes Fulgens, Donald R. Powers

Faculty Publications - Department of Biological & Molecular Science

Rivoli's Hummingbird was named in honor of the Duke of Rivoli when the species was described by René Lesson in 1829. Even when it became known that William Swainson had written an earlier description of this species in 1827, the common name Rivoli's Hummingbird remained until the early 1980s, when it was changed to Magnificent Hummingbird. In 2017, however, the name was restored to Rivoli's Hummingbird when the American Ornithological Society officially recognized Eugenes fulgens as a distinct species from E. spectabilis, the Talamanca Hummingbird, of the highlands of Costa Rica and western Panama.

Rivoli's Hummingbird is found from the …

The Real Snowbirds Of South Florida: Using Citizen Science To Assess The Ranges Of South Florida's Overwintering Birdsh, Alexander V. Levine

FIU Electronic Theses and Dissertations

The overwintering ranges of North American bird populations are shifting and the winter ranges of south Florida’s landbirds remain understudied. Expert-drawn range maps used for scientific studies and environmental public policy could therefore be depicting inaccurate ranges for many migratory birds. This study used citizen science data from eBird (2001–2017) to evaluate patterns in overwintering avian species richness and identify discrepanciesin expert-drawn species range maps for overwintering passerines in south Florida. Most of Florida’s overwintering bird species were sighted in south Florida. Of the species observed there between 2001 and 2017, 66% had range map discrepancies. Fifteen target species were …

Winter Bat Activity In A Landscape Without Traditional Hibernacula, Amy M. Hammesfahr, Rene E. Ohms

United States National Park Service: Publications

Abstract

Prior to 2014, bat research at Devils Tower National Monument (DETO) focused on bats present during the summer months. Biologists at DETO assumed local bats were strictly summer residents due to the presumed lack of typical habitat features associated with bat hibernation, such as caves and mines. This lack of traditional hibernacula features at DETO discouraged staff and research cooperators from studying winter bat populations. Despite the earlier assumption that bats were unlikely to hibernate on the monument, DETO documented significant winter bat activity through passive winter acoustic monitoring. This study is the first study at DETO that documents …

Gulls, Martin S. Lowney, Scott F. Beckerman, Scott C. Barras, Thomas W. Seamans

Wildlife Damage Management Technical Series

Abundant gull (Figure 1) populations in North America have led to a variety of conflicts with people. Gulls cause damage at aquaculture facilities and other properties, and often collide with aircraft. Their use of structures on and near water results in excessive amounts of bird droppings on boats and docks. Their presence near outdoor dining establishments, swimming beaches, and recreational sites can lead to negative interactions with people. Large amounts of gull fecal material pollutes water and beaches resulting in drinking water contamination and swim bans. A combination of dispersal techniques, exclusion and limited lethal control may reduce damage to …

Bird Population Changes Following The Establishment Of A Diverse Stand Of Woody Plants In A Former Crop Field In North Dakota, 1975– 2015, Lawrence D. Igl, Harold A. Kantrud, Wesley Newton

USGS Northern Prairie Wildlife Research Center

Changes in the coverage of trees and shrubs on the North Dakota landscape since Euro- American settlement have likely had a pronounced impact on bird species that favor woody vegetation. Long- term data sets on breeding bird populations in wooded habitats in North Dakota or in the Great Plains are scarce. In 1975 a wildlife habitat plot was established in a 10.5 ha cropland field with a long history of small- grain production. Th e objective of this article is to evaluate the successional changes in bird populations as the habitat at this site became more biologically and structurally complex …

Herpetofauna Of Sumak Allpa: A Baseline Assessment Of An Unstudied Island Herpetofaunal Community, Sara Freimuth

Independent Study Project (ISP) Collection

Sumak Allpa is an island dedicated to the provision and protection of habitat for the conservation and rehabilitation of primates. As such, the island - a varzea ecosystem located in the Western Amazon of Ecuador, one of the most biodiverse and also most threatened regions in the world – consists of protected primary forest that is home not only to a variety of primates, but also to an even wider variety of other taxa, nearly all of which have gone unstudied on the island. The present investigation assessed two of those taxa, amphibians and reptiles, in order to establish a …

Blooming Mountains Of Biodiversity: An Investigation Of Angiosperms On Cerro Mayordomo, Tungurahua, Ecuador, Ella Matsuda

Independent Study Project (ISP) Collection

Ecuador is one of the most biodiverse places on the planet, and many of the species in the region are found nowhere else in the world. The cloud forest is particularly diverse because the mountainous terrain isolates populations and changes in elevation create a wide variety of habitats. Cerro Mayordomo is a relatively unexplored mountain in the cloud forest of Tungurahua, Ecuador. It is known to have very high levels of endemism and several new species have been discovered there, but the biodiversity of angiosperms on the mountain has never been quantified. In this study, 5x5 m quadrants were established …

Assessing Trade-Offs In Large Marine Protected Areas, Tammy E. Davies, Graham Epstein, Stacy E. Aguilera, Cassandra M. Brooks, Michael Cox, Louisa S. Evans, Sara M. Maxwell, Mateja Nenadovic, Natalie C. Ban

Biological Sciences Faculty Publications

Large marine protected areas (LMPAs) are increasingly being established and have a high profile in marine conservation. LMPAs are expected to achieve multiple objectives, and because of their size are postulated to avoid trade-offs that are common in smaller MPAs. However, evaluations across multiple outcomes are lacking. We used a systematic approach to code several social and ecological outcomes of 12 LMPAs. We found evidence of three types of trade-offs: trade-offs between different ecological resources (supply trade-offs); trade-offs between ecological resource conditions and the well-being of resource users (supply-demand trade-offs); and trade-offs between the well-being outcomes of different resource users …

Bats Of Sint Eustatius, Caribbean Netherlands, Scott C. Pedersen, Peter A. Larsen, Sil A. Westra, Ellen Van Norren, Wesley Overman, Gary G. Kwiecinski, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

The bat fauna of the Caribbean island of Sint Eustatius consists of five documented species—Monophyllus plethodon, Brachyphylla cavernarum, Artibeus jamaicensis, Ardops nichollsi, and Molossus molossus—and one provisional species—Tadarida brasiliensis. The Insular Single-leaf Bat, M. plethodon, is reported in the scientific literature for the first time from Sint Eustatius based on material presented herein. The bat fauna of the island is considered to be unbalanced because only three species, which are the environmental generalists, are abundant, whereas the more specialized species are rare or absent from the fauna. It is our hypothesis …