Aquaculture and Fisheries Commons^™

An Acoustic Monitoring Method For Assessing River Dolphin Presence And Changes In The Context Of Anthropogenic Development, Charles A. Muirhead

Graduate Masters Theses

Populations of river dolphins throughout Asia are in decline as a direct result of intensified anthropogenic activity along river systems. Water development projects, land use change, contamination, and intensified fishing practices are known factors contributing to the probable extinction of the Yangtze river dolphin (Lipotes vexillifer) and declining populations of the South Asian river dolphin (Platanista gangetica spp.), Irrawady dolphin (Orcaella brevirostris), and finless porpoise (Neophocaena a. asiaeorientalis). Although not yet as extensive, river system development in South America is following a similar path as that of Asia, with impacts on dolphin species likely to follow. Currently, the Amazon river …

Simulating Detection-Censored Movement Records For Home Range Analysis Planning, Lyndsie S. Wszola, Victoria L. Simonsen, Lucía Corral, Christopher J. Chizinski, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Home range estimation is an important analytical method in applied spatial ecology, yet best practices for addressing the effects of spatial variation in detection probability on home range estimates remain elusive. We introduce the R package “DiagnoseHR,” simulation tools for assessing how variation in detection probability arising from landscape, animal behavior, and methodological processes affects home range inference. We demonstrate the utility of simulation methods for home range analysis planning by comparing bias arising from three home range estimation methods under multiple detection scenarios. We simulated correlated random walks in three landscapes that varied in detection probability and constructed home …

Legacy Habitat Suitability Of Eastern Oysters (Crassostrea Virginica) In Louisiana: A Prelude To Mississippi River Delta Freshwater Diversions, Tasia Mv Denapolis

LSU New Orleans Theses and Dissertations

The Louisiana oyster industry is greatly impacted by freshwater and sediment diversions that are part of the effort to restore the state’s coastline. A habitat suitability index (HSI) proposes species-habitat relationships that can be instrumental in creating impact assessments and suitability predictions for management as new diversions are implemented. An oyster (Crassostrea virginica) HSI was developed using three variables crucial to oyster sustainability: average annual salinity, minimum monthly salinity, and average salinity during the spawning season. These Legacy HSI visualizations show annual fluctuations in the distribution of zones suitable for oyster cultivation prior to proposed diversions in Pontchartrain …

Gofish: A Versatile Nested Pcr Strategy For Environmental Dna Assays For Marine Vertebrates, Mark Y. Stoeckle, Mithun Das Mishu, Zachary Charlop-Powers

Publications and Research

Here we describe GoFish, a strategy for single-species environmental DNA (eDNA) presence/absence assays using nested PCR. The assays amplify a mitochondrial 12S rDNA segment with vertebrate metabarcoding primers, followed by nested PCR with M13-tailed, species-specific primers. Sanger sequencing confirms positives detected by gel electrophoresis. We first obtained 12S sequences from 77 fish specimens for 36 northwestern Atlantic taxa not well documented in GenBank. Using these and existing 12S records, we designed GoFish assays for 11 bony fish species common in the lower Hudson River estuary and tested seasonal abundance and habitat preference at two sites. Additional assays detected nine cartilaginous …

Checklist Of Zooplanktons In Different Rivers Of Bajwat Area, Zahid Bhatti, Muhammad Asif Gondal, Asad Ghufran, Andleeb Batool

Journal of Bioresource Management

Zooplanktons are important fish and waterfowl food. Limnological studies of Marala Wetlands, a complex created by three rivers, i.e., Jammu Tawi, Chenab and Manawar Tawi, entering Bajwat area located 25 km from North of Sialkot city from state of Jammu and Kashmir, were carried out between October, 2000 to September 2001. This survey was carried out to create a checklist of zooplanktons existing in the study site which would help in future studies relating to aquatic biodiversity and ecological studies of wetlands. A minimum of 25 species of zooplanktons were present in the wetland area, which can be included into …

Optimization Of Light Irradiance During The Early Life Of Sexually-Produced Porites Astreoides And Agaricia Agaricites Recruits, Nicholas J. Mcmahon

HCNSO Student Theses and Dissertations

Current solutions of coral restoration rely mainly on fragmentation. Though a reliable technique, this asexual form of reproduction does not benefit the genetic diversity of the coral reef. With many global and local stressors threatening corals’ existence, the resiliency of corals to future ocean conditions depends highly on sexual reproduction to produce new genotypes. New technology allows coral spawning/larval release, larval settlement and rearing to be carried out in an aquarium system. Many of the techniques necessary to maintain coral recruits are well-established, however the effects of light intensity remain to be studied for these early life stages. Newly …

Contrasting Population Genetic Structure In Three Aggregating Groupers (Percoidei: Epinephelidae) In The Indo-West Pacific: The Importance Of Reproductive Mode, Ka Yan Ma, Lynne Van Herwerden, Stephen J. Newman, Michael L. Berumen, John Howard Choat, Ka Hou Chu, Yvonne Sadovy De Mitcheson

Fisheries Research Articles

Background

Understanding the factors shaping population genetic structure is important for evolutionary considerations as well as for management and conservation. While studies have revealed the importance of palaeogeographic changes in shaping phylogeographic patterns in multiple marine fauna, the role of reproductive behaviour is rarely considered in reef fishes. We investigated the population genetics of three commercially important aggregating grouper species in the Indo-West Pacific, namely the camouflage grouper Epinephelus polyphekadion, the squaretail coral grouper Plectropomus areolatus, and the common coral trout P. leopardus, with similar life histories but distinct spatio-temporal characteristics in their patterns of forming spawning aggregations. …

Multi-Metric Conservation Assessment For The Imperiled Clinch Dace, Michael James Moore, Donald J. Orth, Eric M. Hallerman

Southeastern Fishes Council Proceedings

Planning frameworks allow managers to spatially prioritize actions to promote species conservation. Traditional aquatic conservation planning frameworks are often organized at the ecological community or ecosystem level, which often neglect imperiled taxa occupying species-poor assemblages. In this study, we develop a multi-metric conservation assessment for the 15 geographically distinct candidate conservation areas (CCAs) occupied by the imperiled Clinch Dace (Chrosomus sp. cf. saylori). Clinch Dace habitat is threatened by anthropogenic landscape alterations, especially for coal mining and timber harvest. Our framework used four metrics to assess the conservation value of each subpopulation of Clinch Dace namely: “habitat …

Transforming Lives In Coastal Communities Through Economic Development: Breeding Crassostrea Virginica For Alternative Oyster Culture, Brian Randall Callam

LSU Doctoral Dissertations

This dissertation helped address the commercialization of triploid Crassostrea virginica production and develop tetraploid C. virginica broodstock in Louisiana by addressing triploid commercialization and tetraploid broodstock development. This was done by: 1) developing regional breeding plans for diploid and tetraploid C. virginica targeted at the Gulf Coastal Region, 2) assessing the effect of chromosome set manipulation on gonadal development in diploid, triploid, and tetraploid C. virginica, 3) quantifying the variation of commercially important hatchery traits in triploid C. virginica larvae from different tetraploid parents, 4) developing an up-to-date remote setting manual for the Gulf Coastal Region for industry use, …

Integrate Use Of Drones And Qr Codes As Complementary Components For Monitoring, Control And Surveillance Systems For Artisanal Fishing Vessels In Peru, Eduardo Israel Zamora Chung

World Maritime University Dissertations

This dissertation aims to design a new monitoring, control and surveillance (MCS) component that may be suitable for Peruvian artisanal fishing. When it refers to suitable, it means that it should be low-cost and compatible with other MCS systems to improve the fight against Illegal, Unreported and Unregulated (IUU) fishing. In this regard, through the triangulation among methods including the content analysis as well as interviews and questionnaires to the primary stakeholders of the Peruvian artisanal fishing, it was found that there is a direct connection between a suitable MCS and the fulfilment of the target 14.b of the Sustainable …

Community-Based Organisations As An Approach To Effective Sustainable Artisan Fishing, Mary Mindi Wabit Epse Ngawana

World Maritime University Dissertations

Fishing in Cameroon is one of the main economic activities and lifeline of the coastal communities in the South West Region of Cameroon, especially the artisanal fishing which is mostly traditional and subsistence. Cameroon fisheries are either fully exploited or are already in the critical state of over-exploitation by foreigners and local communities. However, illegal fishing and aggressive fishing practices in the marine environment has led to over exploitation of the fisheries, mangroves and environmental deterioration. There is an urgent need to develop and introduce effective and efficient sustainable approaches, to the exploitation and management of Cameroon’s fisheries and other …

Iuu Fishing : A Gateway To Transnational Crimes In Jamaica, Judy-Ann Icinda Neil

World Maritime University Dissertations

No abstract provided.

Integrated Use Of Drones And Qr Codes As Complementary Components For Monitoring, Control And Surveillance Systems For Artisanal Fishing Vessels In Peru, Eduardo Israel Zamora Chung

World Maritime University Dissertations

No abstract provided.

Compliance And Enforcement For The Exclusive Economic Zone Fisheries Management In The United Republic Of Tanzania, Christian Alphonce Nzowa

World Maritime University Dissertations

No abstract provided.

Ecosystem Based Fisheries Management (Ebfm) Risk Assessment Of The Western Australian Sea Cucumber Fishery, F J. Webster, Anthony M. Hart

WA Marine Stewardship Council report series

This report provides a comprehensive overview of the commercial Western Australian Sea Cucumber Fishery (SCF) and the outcomes from the 2016 ecological risk assessment for this fishery. Two key species, sandfish (Holothuria scabra) and redfish (Actinopyga echinites), are targeted by the commercial SCF through hand collection by diving and wading primarily in shallow waters of northern WA.

Managing Lake Fertility Within The Guidelines Of A Nutrient Management Plan And Based On Algal Nutrient Limitation, Bradley J. Austin, J. Thad Scott, Brian E. Haggard

Arkansas Water Resources Center Technical Reports

The specific objectives were to first, monitor nutrients, algal biomass, and water clarity in lakes Cove, Spring, and Wedington. Second, evaluate whether algal growth in each of the lakes was limited by N, P, or both N and P. This research was conducted to help USFS better manage lake fertilization to maximize algal growth and improve the fisheries within these lakes.

Resource Assessment Report Temperate Demersal Elasmobranch Resource Of Western Australia, Matias Braccini, Nick Blay, S. A. Hesp, Brett Molony

Fisheries Research Reports

Whiskery (Furgaleus macki), gummy (Mustelus antarcticus), dusky (Carcharhinus obscurus) and sandbar (C. plumbeus) sharks are the main (~80% of the shark catch) shark species of the Temperate Demersal Elasmobranch Resource (TDER).

Troubled Waters: Threats And Extinction Risk Of The Sharks, Rays And Chimaeras Of The Arabian Sea And Adjacent Waters, Rima W. Jabado, Peter M. Kyne, Riley A. Pollom, David A. Ebert, Colin A. Simpfendorfer, Gina M. Ralph, Shakha S. Al Dhaheri, K. V. Akhilesh, Khadeeja Ali, Mohamud Hassan Ali

Biological Sciences Faculty Publications

The extinction risk of sharks, rays and chimaeras is higher than that for most other vertebrates due to low intrinsic population growth rates of many species and the fishing intensity they face. The Arabian Sea and adjacent waters border some of the most important chondrichthyan fishing and trading nations globally, yet there has been no previous attempt to assess the conservation status of species occurring here. Using IUCN Red List of Threatened Species Categories and Criteria and their guidelines for application at the regional level, we present the first assessment of extinction risk for 153 species of sharks, rays and …

Ground-Truthing Social Vulnerability Indices Of Alaska Fishing Communities, Anna Lavoie, Kim Sparks, Stephen Kasperski, Amber Himes-Cornell, Kristin Hoelting, Conor Maguire

All Faculty Scholarship for the College of the Sciences

Community vulnerability is increasingly evaluated through quantitative social indices, typically developed using secondary data sources rather than primary data collection. It is necessary to understand the validity of these indices if they will be used to inform policy and decision making. This paper presents a ground-truthing effort to validate quantitative indices that characterize the well-being of Alaska fishing communities. We utilized ethnographic data collected from 13 representative communities and a capital assets framework to ground-truth the indices, in which qualitative ranks of vulnerability were compared against quantitative indices. The majority (73.8%) of ranks were in complete or moderate agreement and …

Identification Of Shark Species In Commercial Products Using Dna Barcoding, Rosalee S. Hellberg, Rachel B. Isaacs, Eduardo L. Hernandez

Food Science Faculty Articles and Research

Sharks are harvested globally and sold in a variety of commercial products. However, they are particularly vulnerable to overfishing and many species are considered protected or endangered. The objective of this study was to identify species in various commercial shark products and to assess the effectiveness of three different DNA barcoding primer sets. Thirty-five products were collected for this study, including fillets, jerky, soup, and cartilage pills. DNA barcoding of these products was undertaken using two full-length primer sets and one mini-barcode primer set within the cytochrome c oxidase subunit (COI) gene. Successfully sequenced samples were then analyzed and identified …

Bottom Trawl Fishing Footprints On The World’S Continental Shelves, Ricardo O. Amoroso, C Roland Pitcher, Adriaan D. Rijnsdorp, Robert A. Mcconnaughey, Ana M. Parma, Petri Suuronen, Ole R. Eigaard, Francois Bastardie, Niels T. Hintzen, Franziska Althaus, Susan Jane Baird, Jenny Black, Lene Buhl-Mortensen, Alexander B. Campbell, Rui Catarino, Jeremy Collie, James H. Cowan Jr., Dean Durholtz, Nadia Engstrom, Tracey P. Fairweather, Heino O. Fock, Richard Ford, Patricio A. Galvez, Hans Gerritsen, Maria Eva Gongora, Jessica A. Gonzalez, Jan G. Hiddink, Kathryn M. Hughes, Steven S. Intelmann, Chris Jenkins, Patrik Jonsson, Paulus Kainge, Mervi I. Kangas, Johannes N. Kathena, Stefanos Kavadas, Rob W. Leslie, Steve G. Lewis, Mathieu Lundy, David Makin, Julie Martin, Tessa Mazor, Genoveva Gonzalez-Mirelis, Stephen J. Newman, Nadia Papadopoulou, Paulette E. Posen, Wayne Rochester, Tommaso Russo, Antonello Sala, Jayson M. Semmens, Christina Silva, Angelo Tsolos, Bart Vanelslander, Corey B. Wakefield, Brent A. Wood, Ray Hilborn, Michael J. Kaiser, Simon Jennings

Fisheries Research Articles

Bottom trawlers land around 19 million tons of fish and invertebrates annually, almost one-quarter of wild marine landings. The extent of bottom trawling footprint (seabed area trawled at least once in a specified region and time period) is often contested but poorly described. We quantify footprints using high-resolution satellite vessel monitoring system (VMS) and logbook data on 24 continental shelves and slopes to 1,000-m depth over at least 2 years. Trawling footprint varied markedly among regions: from < 10 % of seabed area in Australian and New Zealand waters, the Aleutian Islands, East Bering Sea, South Chile, and Gulf of Alaska to > 50% in some European seas. Overall, 14 % of the 7.8 million-km2 study area was trawled, and 86% was not trawled. Trawling activity …

An Evaluation Of Sciaenid Growth In The Gulf Of Mexico, Shane Flinn

LSU Master's Theses

Growth models estimate life history parameters that are used in the management of fisheries stocks. The most commonly used growth model in fisheries is the von Bertalanffy growth model (VBGM), yet it has been shown to provide a poor fit for length-at-age data of some species and other models exist. I reviewed 196 peer-reviewed age and growth studies and 50 NOAA stock assessments to examine temporal trends in the use of growth models and model selection in fisheries. I found that the use of multi-model frameworks has increased since the year 2000 and information theoretic approaches are replacing goodness-of-fit and …

The Effects Of Different Dietary Protein Sources On The Growth Performances And Body Composition Of The Rock Porgy, Oplegnathus Fasciatus, I-Hao Huang, Jen-Hong Chu, Angela Chien, Shyn-Shin Sheen

Journal of Marine Science and Technology–Taiwan

This study investigated the effects of different dietary protein sources on the growth performance and muscle composition of the rock porgy, Oplegnathus fasciatus. Four isonitrogenous (48% crude protein) and isolipidic (10% crude lipid) diets were formulated with Peruvian fishmeal (PFM), Taiwanese fishmeal (TFM), poultry by-product meal (PBM) and meat and bone meal (MBM), respectively. The rock porgy (mean initial weight 10.58 g) were reared in 12 tanks and fed with one of the four treatment diets in triplicate for six weeks. The rock porgy fed with diet TFM had significantly higher weight gain than those fed with the other treatment …

A Survey Of Boat-Based Recreational Fishing In Inner Shark Bay 2016/17, S.M Taylor, Aldo S. Steffe, E.K. Lai, K. L. Ryan, Gary Jackson

Fisheries Research Reports

Monitoring the temporal and spatial variability in recreational fishing provides necessary information for assessing resource sustainability, monitoring resource allocation and informing fisheries management. This is particularly important in inner Shark Bay because recreational fishing occurs in a World Heritage Area and Marine Park. The majority of boat-based recreational fishers in inner Shark Bay target Pink Snapper (Chrysophrys auratus) and three genetically distinct stocks of this species occur in the Denham Sound, Eastern Gulf and Freycinet Estuary Management Zones.

Protecting Breeding Stock Levels Of The Blue Swimmer Crab Resource In The South West : A Review Of Management Arrangements, Department Of Primary Industries And Regional Development

Fisheries Management Papers

This discussion paper identifies that the existing management arrangements do not adequately address the protection of the breeding stock across the resource because they have been developed at the scale of local estuaries and embayments. In particular, the arragements are not achieving appropriate levels of protection for mated, pre-spawned females, which become highly vulnerable to capture in late autumn, winter and spring.

The Influence Of Habitat Preference On Longitudinal Population Composition And Distribution Of Groupers (Serranidae) In Chumbe Island Coral Park, Zanzibar Tanzania, Caroline Daley

Independent Study Project (ISP) Collection

A survey of six common grouper (Serranidae) species was conducted on both the western protected and eastern unprotected reefs around Chumbe Island. Species, estimated maturity, and fundamental niche and general habitat preference was extrapolated based on observed realized niche and qualified according to substrate, depth, slope position, and general reef region. Abundance, biomass density, and biodiversity of Serranid populations were compared among locations on the reef with habitat preference in mind in order to best assess how habitat influences population composition, distribution, and health. The results of this study provide depth to previous research on the protected reef and indicate …

Fish Diversity And Distribution In The Seagrass-Coral Reef Continuum At Two Sites Off The Western Coast Of Isla Bastimentos, Bocas Del Toro, Panama, Kathy Liu

Independent Study Project (ISP) Collection

Coral reefs are the most diverse marine ecosystem and the largest biogenic structure on Earth. They serve as shelter for many reef fishes and are a food source for resident and visiting fish species. In the tropics, coral reefs are often in close proximity to seagrass beds and the two contiguous marine habitats are not only highly interconnected but also highly understudied. The seagrass-coral reef continuum offers a wide array of services to human society as well as to various life stages of reef fishes resulting in diel, temporal, or yearly migrations of fish between the two habitats. Tropical reef …

Expanding Instream Flows To Protect Ecosystems In Overallocated River Basins, Belize A. Lane, David E. Rosenberg

Reports

Utahns are expressing a rapidly growing interest in protecting and enhancing instream flows for outdoor recreation and environmental benefits (Endter-Wada et al. 2015). However, many Utah rivers are already over-allocated for agricultural, municipal, hydropower and other water uses, making it difficult to procure additional water for instream flows. ‘Use it or lose it’ western water law and mentality encourages Utahns to use water rather than return it to rivers and ecosystems.

This briefing reviews existing instream flow practices allowed by the Utah water rights system and the challenges to implementation. We suggest key technical and legislative opportunities within and outside …

Weight-Length Summaries For Western Australian Fish Species Derived From Surveys Of Recreational Fishers At Boat Ramps, C.B. Smallwood, Alissa Tate, Karina L. Ryan

Fisheries Research Reports

Estimates of recreational catch from boat-based recreational fishers have been generated in Western Australia since 2011/12 using an integrated survey comprising off-site Phone-Diary Surveys, on-site Boat Ramp Surveys and Remote Camera Surveys. The primary purpose of the Boat Ramp Surveys is to determine an average weight for key species to convert estimates of recreational catch by numbers (determined from the Phone-Diary Survey) to harvest weight for comparison with catches from the commercial sector.

Effect Of Stocking Rate On Growing Juvenile Sunshine Bass, Morone Chrysops × M. Saxatilis, In An Outdoor Biofloc Production System, Bartholomew W. Green, Steven D. Rawles, Carl D. Webster, Matthew E. Mcentire

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The biofloc technology production system is a production intensifying management strategy used primarily for culturing tilapia and penaeid shrimp, both of which can consume the biofloc. Other fish can be grown in biofloc systems because the biofloc serves to maintain water quality, metabolizing the ammonia excreted by intensively fed fish. A dose-response study was conducted in an outdoor biofloc system to begin quantifying the stocking rate-production function for sunshine bass, Morone chrysops x M. saxatilis, advanced fingerlings. Sunshine bass (2.9 ± 0.2 g/fish) were stocked into tanks at 50 to 250 fish/m² in 50 fish/m² increments. After …