Animal Sciences Commons^™

A New Vine Snake (Reptilia, Colubridae, Oxybelis) From Peru And Redescription Of O. Acuminatus, Robert C. Jadin, Michael J. Jowers, Sarah A. Orlofske, William E. Duellman, Christopher Blair, John C. Murphy

Publications and Research

The Brown Vine Snake, Oxybelis aeneus, was until recently considered a single species, distributed from southern Arizona through the Neotropics into southeastern Brazil. However, newly conducted research restructured the species with a substantial taxonomic revision, recognizing five additional taxa (i.e. O. koehleri, O. microphthalmus, O. potosiensis, O. rutherfordi, O. vittatus) in this species complex. This revision focused on populations in North America, Central America, and northern South America while neglecting the southern portion of its distribution. Here, we examine the taxonomic history of the complex and use it along with specimen data to resurrect O. acuminatus from southeastern Brazil. Finally, …

Cryptic Diversity In The Mexican Highlands: Thousands Of Uce Loci Help Illuminate Phylogenetic Relationships, Species Limits And Divergence Times Of Montane Rattlesnakes (Viperidae: Crotalus ), Christopher Blair, Robert W. Bryson Jr, Charles W. Linkem, David Lazcano, John Klicka, John E. Mccormack

Publications and Research

With the continued adoption of genome‐scale data in evolutionary biology comes the challenge of adequately harnessing the information to make accurate phylogenetic inferences. Coalescent‐based methods of species tree inference have become common, and concatenation has been shown in simulation to perform well, particularly when levels of incomplete lineage sorting are low. However, simulation conditions are often overly simplistic, leaving empiricists with uncertainty regarding analytical tools. We use a large ultraconserved element data set (>3,000 loci) from rattlesnakes of the Crotalus triseriatus group to delimit lineages and estimate species trees using concatenation and several coalescent‐based methods. Unpartitioned and partitioned maximum …

Bats Of St. Vincent, Lesser Antilles, Gary G. Kwiecinski, Scott C. Pedersen, Hugh H. Genoways, Peter A. Larsen, Roxanne J. Larsen, Justin D. Hoffman, Fitzroy Springer, Carleton J. Phillips, Robert J. Baker

University of Nebraska State Museum: Mammalogy Papers

The chiropteran fauna of the island of Saint Vincent, represented by 12 species, is among the most complex in the Lesser Antilles, being represented by four families including Noctilionidae (1 species), Mormoopidae (1), Phyllostomidae (8), and Molossidae (2). This fauna includes four trophic guilds as represented by Noctilio leporinus (piscivore/insectivore); Glossophaga longirostris and Monophyllus plethodon (nectarivore/pollenivore); Artibeus lituratus, A. schwartzi, Brachyphylla cavernarum, Ardops nichollsi, and Sturnira paulsoni (frugivore); and Pteronotus fuscus, Micronycteris buriri, Molossus molossus, and Tadarida brasiliensis (insectivore). One species—Micronycteris buriri—and two subspecies—Sturnira paulsoni paulsoni and Ardops nichollsi vincentensis …

Background Paper On Systematics, Invasive Species Advisory Committee

National Invasive Species Council

The Invasive Species Advisory Committee (ISAC) makes recommendations to the Federal government agencies that have an invasive species portfolio. This systematics recommendation strives to motivate action in the agencies that have been identified in the Situation Report as the agencies with systematics capabilities in the Federal government.

The USDA Agricultural Research Service (ARS) and the Smithsonian Institution are repositories of a large amount of the systematics collections and human capabilities for systematics essential work on invasive species. Conducting the Survey of their systematics capabilities and needs is urgent. The Survey will describe actions in research, specimen-based collections, a biodiversity informatics …

A New Species Of Chiasmocleis (Microhylidae, Gastrophryninae) From The Atlantic Forest Of Espírito Santo State, Brazil, João Filipe Tonini, Maruicio Forlani, Rafael O. De Sá

Biology Faculty Publications

Among Neotropical microhylids, the genus Chiasmocleis is exceptionally diverse. Most species ofChiasmocleis were described in recent years based on external morphology, but recent studies using molecular data did not support the monophyly of the species groups clustered based on feet webbing. Furthermore, a phylogeographic study of C. lacrimae estimated high genetic divergence and low gene flow among populations across small geographic ranges. Increasing the molecular and geographic sampling, and incorporating morphological data, we identified new cryptic species. Herein, we used novel genetic and morphological data to describe a new species of Chiasmocleis.

Molecular Phylogeny Of Microhylid Frogs (Anura: Microhylidae) With Emphasis On Relationships Among New World Genera, Rafael O. De Sá, Jeffrey W. Streicher, Relebohile Sekonyela, Mauricio C. Forlani, Simon P. Loader, Eli Greenbaum, Stephen Richards, Célio F.B. Haddad

Biology Faculty Publications

Background: Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis).

Results: One mitochondrial and three nuclear genes (about 2.8 kb) were sequenced to assess phylogenetic relationships. We utilized an …

Bats Of Barbados, Hugh H. Genoways, Roxanne J. Larsen, Scott C. Pedersen, Gary G. Kwiecinski, Peter A. Larsen

University of Nebraska State Museum: Mammalogy Papers

The chiropteran fauna of Barbados includes representatives of four families — Noctilionidae, Phyllostomidae, Vespertilionidae, and Molossidae — including 1 piscivore (Noctilio leporinus), 1 omnivore (Brachyphylla cavernarum), 1 pollenivore/nectarivore (Monophyllus plethodon), 1 frugivore (Artibeus jamaicensis), and 2 insectivorous species (Myotis nyctor and Molossus molossus). Despite an early report, we believe that preponderance of the evidence available at this time is that E. fuscus is not part of the fauna of Barbados. The Barbadian chiropteran fauna of 6 species is much smaller than those on the four neighboring Lesser Antillean islands to …

Multilocus And Parametric Analyses Of The Evolutionary History Of The Amazonian Peacock Cichlids, The Genus Cichla (Teleostei: Cichlidae), Stuart Willis

School of Biological Sciences: Dissertations, Theses, and Student Research

Accurate knowledge of species boundaries and species phylogeny are fundamental to testing hypotheses of recent evolutionary processes, but the estimation of these partitions is challenging due both to inherent confusion about what is being estimated as well as the data available to estimate them. Using multilocus data from mtDNA, microsatellites, and nuclear locus sequences of over 1100 individuals, we delimited eight separately evolving species of Cichla rather than the 15 described. Among species we found evidence of rare but widespread introgressive hybridization, while within these species we observed evidence of long-term gene exchange and constrained evolutionary trajectories. In most cases …

Bats Of The Grenadine Islands, West Indies, And Placement Of Koopman's Line, Hugh H. Genoways, Gary G. Kwiecinski, Peter A. Larsen, Scott C. Pedersen, Roxanne J. Larsen, Justin D. Hoffman, Mark De Silva, Carleton J. Phillips, Robert J. Baker

University of Nebraska State Museum: Mammalogy Papers

Almost nothing is known concerning the chiropteran fauna on the Grenadine Islands, a chain of islands between St. Vincent and Grenada located near the southern end of the Lesser Antilles. Previously, only a single species—Glossophaga longirostris—had been reported from the Grenadines. Our research, conducted on 4 occasions over the period of 1980 to 2006, provided museum vouchers and genetic specimens for the addition of 4 other species to the known fauna of these islands—Noctilio leporinus, Artibeus lituratus, Artibeus schwartzi, and Molossus molossus. The Grenadines, being situated between St. Vincent and Grenada, occupy an important zoogeographic position. …

Hybrid Zones, Genetic Isolation, And Systematics Of Pocket Gophers (Genus Geomys) In Nebraska., Hugh H. Genoways, Meredith J. Hamilton, Darin M. Bell, Ryan R. Chambers, Robert T. Bradley

University of Nebraska State Museum: Mammalogy Papers

Pocket gophers of the genus Geomys are common inhabitants of many habitats throughout most of the state of Nebraska. Because the taxonomic history of Geomys has undergone numerous changes through the years, these pocket gophers have been the subjects of ongoing taxonomic and distributional studies and in more recent years genetic studies to understand relationships among populations. In order to gain deeper insight into the relationships among these taxa of Geomys, we intensively collected specimens from areas where chromosomal races were thought to form contact zones. Results from examination of genetic (chromosomes, mitochondrial cytochrome-b gene sequences, and nuclear interphotoreceptor …

Genetic Resolution Of The Enigmatic Lesser Antillean Distribution Of The Frog Leptodactylus Validus (Anura, Leptodactylidae), Keneth Yanek, W. R. Heyer, Rafael O. De Sá

Biology Faculty Publications

Leptodactylus validus has an unusual distribution, inhabiting Trinidad, Tobago, and the Lesser Antilles, but not the mainland of South America. This distribution is inconsistent with other distribution patterns observed for these islands. Although slight variation in adult morphology has been observed among the different island populations of L. validus, call data suggest the presence of a single species. Calls of L. pallidirostris from Venezuela and Brazil suggested that this taxon might be conspecific with L. validus. Sequence data from the 12S and 16S mt rDNA genes indicate that L. validus represents a single species throughout its distribution and is conspecific …

The Florida Bonneted Bat, Eumops Floridanus (Chiroptera: Molossidae): Distribution, Morphometrics, Systematics, And Ecology, Robert M. Timm, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

A review and reappraisal of bats of the genus Eumops (Chiroptera: Molossidae) reveals that considerable geographic variation is present in the bonneted bat, E. glaucinus; it is a complex consisting of >1 species. Bonneted bats in Florida are significantly larger than those in all other populations, and have proportionally shorter and deeper basisphenoid pits, the glenoid fossa is broadly triangular with rounded apices, and bacular shape differs from that in other populations. Additionally, bonneted bats in Florida have a broader palate than bats from populations in South America. Given these differences, the correct name for both Pleistocene and Recent …

Bats Of Nevis, Northern Lesser Antilles, Scott C. Pedersen, Hugh H. Genoways, Matthew N. Morton, James W. Johnson, Siân E. Courts

University of Nebraska State Museum: Mammalogy Papers

Only one species of bat, Molossus molossus, previously has been documented as occurring on the northern Lesser Antillean island of Nevis. Field research and reviews of existing museum collections have provided documentation based on voucher specimens for an additional seven species occurring on the island — Noctilio leporinus, Brachyphylla cavernarum, Monophyllus plethodon, Ardops nichollsi, Artibeus jamaicensis, Natalus stramineus, and Tadarida brasiliensis. The biological diversity of the chiropteran fauna on Nevis is similar to that found on other islands in the northern Lesser Antilles. Ecologically, this is a simple chiropteran fauna, including one …

Molecular Systematics Of The Fruit Bat, Artibeus Jamaicensis: Origin Of An Unusual Island Population, Dorothy E. Pumo, Iksoo Kim, James Remsen, Carleton J. Phillips, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

DNA sequences from mitochondrial tRNA genes, the light strand replication site, and a region of the 12s rRNA gene were used to test the hypothesis that the unusual Antillean island subspecies, Artibeus jamaicensis schwartzi, was derived from a South American origin. Parsimony and bootstraping analyses allied the mitochondrial genome in these bats with mitochondrial DNA (mtDNA) isolated from Artibeus planirostris living in French Guiana rather than with mtDNA isolated from Artibeus jamaicensis from the Antilles or Mexico. Although the tRNA sequences differed slightly, the 12s rRNA sequences were identical in mtDNA isolated from A. j. schwartzi on St. Vincent …

A New Species Of The Genus Rhogeessa, With Comments On Geographic Distribution And Speciation In The Genus, Hugh H. Genoways, Robert J. Baker

University of Nebraska State Museum: Mammalogy Papers

A new species of Rhogeessa is described from southern Suriname. The new species is characterized by a karyotype that possesses a diploid number of 52 and a fundamental number of 52 and by its relatively large overall size compared to other South American Rhogeessa. Tenspecies are now recognized within the genus. Seven of these species, including the one described herein, are members of R. tumida complex. Two of these species--R. io and R. minutilla--also occur in South America and the remaining four species are confined to Mexico and Central America.

A Multivariate Analysis Of Systematic Relationships Among Populations Of The Short-Tailed Shrew (Genus Blarina) In Nebraska, Hugh H. Genoways, Jerry R. Choate

University of Nebraska State Museum: Mammalogy Papers

The genus Blarina (Mammalia: Soricidae) is represented in Nebraska by two well-differentiated, geographically exclusive phena that generally have been regarded as subspecies. Field studies conducted along their zone of contact resulted in the collection of representatives of both phena at each of five localities. Cluster analysis of distance matrix readily separated reference samples of the phena as well as test samples from near the zone of contact. A three-dimensional projection of the specimens onto their first three principal components, together with a discriminant function analysis, served further to elucidate the degree of differentiation among the phena and to confirm that …