Animal Sciences Commons^™

Biodiversity Of Philippine Marine Fishes: A Dna Barcode Reference Library Based On Voucher Specimens, Katherine E. Bemis, Matthew G. Girard, Mudjekeewis D. Santos, Kent E. Carpenter, Jonathan R. Deeds, Diane E. Pitassy, Nicko Amor L. Flores, Elizabeth S. Hunter, Amy C. Driskell, Kenneth S. Macdonald Iii, Lee A. Weigt, Jeffrey T. Williams

Biological Sciences Faculty Publications

Accurate identification of fishes is essential for understanding their biology and to ensure food safety for consumers. DNA barcoding is an important tool because it can verify identifications of both whole and processed fishes that have had key morphological characters removed (e.g., filets, fish meal); however, DNA reference libraries are incomplete, and public repositories for sequence data contain incorrectly identified sequences. During a nine-year sampling program in the Philippines, a global biodiversity hotspot for marine fishes, we developed a verified reference library of cytochrome c oxidase subunit I (COI) sequences for 2,525 specimens representing 984 species. Specimens were primarily purchased …

Nexus Between Animal Welfare, Environment, And Sustainable Development: Resource Document, Wellbeing International

Nexus – UNEP – Animal Welfare, Environment, Sustainable Development

This Resource Document has been developed to explore the Nexus (links) between Animal Welfare, the Environment, and Sustainable Development. The document includes relevant citations and reports addressing the topics encompassed by the Nexus. It will be maintained as a “living document” (subject to revision) in the WellBeing International Studies Repository. The original document and subsequent revisions will be kept in the Repository to provide a record of the changes.

Can Financialization Save Nature? The Case Of Endangered Species, Diane-Laure Arjalies, Delphine Gibassier

Business Publications

The current biodiversity loss is dramatic. Over the past 50 years, more than 68% of the mammals, birds, amphibians, reptiles, and fish on earth have disappeared, putting the planet's survival and its inhabitants – including human beings – at risk (WWF, 2020). Financialization, or the transformation of nature into financial assets, is increasingly proposed as a solution to the biodiversity crisis. Proponents of financialization believe that assigning a monetary value to nature will incentivize human beings to protect habitats and their species. This article offers a four-mechanism model of nature’s financialization, explaining why it is virtually impossible to financialize nature. …

Final Report Floating Upwelling System Harvest Road Oceans, Robert Michael, Scott Bennett

Fisheries occasional publications

A Floating Upwelling System or FLUPSY is a mechanical system for the culture of seed stock during the nursery stage of commercial bivalve production.

Vertebrate Scavenger Diversity And Ecosystem Services Along An Elevational Gradient In Central Nepal, Aishwarya Bhattacharjee

Dissertations, Theses, and Capstone Projects

A growing number of studies recognize the ecological significance of vertebrate scavengers, and several species belonging to this diverse, functional guild are of high conservation importance around the globe. Studies on taxonomic and functional components of biodiversity often use elevation gradients to comprehensively examine patterns and drivers across multiple spatial scales. Yet, there are relatively few elevational studies on large vertebrates or multi-taxa guilds, and the related variation of their ecosystem services. In particular, scavenger research has largely focused on local-scale studies or regional/global comparisons of local-scale investigations. Moreover, these studies primarily consider taxonomic community characteristics and the patterns of …

Conspecific Aggression Of Invasive Crayfish, P. Clarkii, In Response To Chemical Cues, Elyse Vetter, Elise Dearment, Audrey Fontes, Gary Bucciarelli, Lee Kats

Seaver College Research And Scholarly Achievement Symposium

Red Swamp Crayfish, Procambarus clarkii, have caused vast damage to the stream ecosystem of the Santa Monica Mountains, following their invasive introduction. Through their extensive eating habits, high levels of aggression, and responsiveness to environmental stimuli, P. clarkii have a tremendous impact on the success of native species in the Santa Monica Mountains. With exposure to chemical cues, crayfish are able to perceive threats and react accordingly. To determine the extent of such chemoreception, pairs of P. clarkii were tested in the laboratory for conspecific aggression in the presence of native newt, native frog, and conspecific alarm cues. The …

The Effects Of Symbiote Ostracods On Invasive Crayfish Behavior, Audrey Fontes, Elyse Vetter, Gary Bucciarelli, Lee Kats

Seaver College Research And Scholarly Achievement Symposium

Invasive crayfish, Procambarus clarkii, are known to negatively impact the biodiversity of Santa Monica Mountain streams. Small symbiotes, ostracods, live on Procambarus clarkii in some local streams. However, their effect on the behaviour of invasive crayfish is unknown. We used an aqueous chlorobutanol solution to remove ostracods from crayfish. We paired control crayfish with those that had ostracods removed and scored aggressive interactions. Crayfish without ostracods were found to be significantly more aggressive towards crayfish with ostracods. When we compared feeding behavior, we found that crayfish without ostracods consumed food more quickly than control crayfish. We again subjected crayfish …

Environmental Controls On The Spatial Distribution Of Greenfin Darters And Biodiversity In The Blue Ridge Mountains, Dri Tattersfield

CMC Senior Theses

Disproportionate concentrations of biodiversity in mountains worldwide suggest linkages between geologic processes and biodiversity that are not yet well understood. The Tennessee River Basin in the Blue Ridge Mountains of the southeastern U.S. is a global hotspot for freshwater fish biodiversity. To investigate drivers of biodiversity in the Tennessee River Basin, and explore links to geologic processes, I study the Greenfin Darter (Nothonotus chlorobranchius), a small fish endemic to the upper Tennessee River Basin. I use generalized linear models (GLMs) to evaluate the influence of topography, lithology, climate and land use on the distribution of the Greenfin Darter, …

Contributions To The Knowledge Of Water Bugs In Mindoro Island, Philippines, With A Species Checklist Of Nepomorpha And Gerromorpha (Insecta, Hemiptera, Heteroptera), Arthien Lovell Pelingen, Herbert Zettel, Clister V. Pangantihon, Kyra Mari Dominique Aldaba, Earl Kevin Fatallo, Jemillie Madonna De Leon, Hendrik Freitag

Biology Faculty Publications

This survey aims to provide an updated species checklist of aquatic and semi-aquatic bugs in the intra-Philippine biogeographic Region of Mindoro. An assessment survey of water bugs (Hemiptera, Heteroptera) was conducted mostly by manual collection in selected areas of Oriental Mindoro from 2017 to 2018, in which some of the collecting activities were undertaken by graduate students of Ateneo de Manila University. Twenty-nine aquatic and semi-aquatic heteropteran species were documented and some are known island-endemic species or subspecies, including Enithares martini mindoroensis Nieser & Zettel, 1999, Hydrotrephes stereoides mindoroensis Zettel, 2003, Aphelocheirus freitagi Zettel & Pangantihon, 2010, Rhagovelia mindoroensis Zettel, …

New Approach To Health And The Environment To Avoid Future Pandemics, Serge Morand

Animal Sentience

This commentary expands Wiebers & Feigin’s target article by pinpointing how declining wildlife, expanding livestock and globalisation contribute to the increase in epidemics of zoonotic diseases, the COVID-19 crisis and future health crises. Epidemics and the emergence of zoonoses are manifestations of dysfunctional links with animals, both wild and domestic, requiring a new approach to health and the environment.

Mammal Species Inventory Using Various Trapping Methods In Zone 4 Of Billy Barquedier National Park, Belize During Rainy Season, Mersady Redding

Animal Science Undergraduate Honors Theses

Belize is a small country, but it is extremely ecologically diverse. Based on the few studies conducted in Belize, the abundance of mammals is low but diversity is high. Particular findings note the number and identity of species differed between four sites in the Maya Mountains of Belize, indicating that a data set from a single site is not representative of the Neotropical region. Insufficient data is available to estimate current species richness of many areas in Belize, including Billy Barquedier National Park (BBNP). The objective of this study was to explore trapping and documentation methods of terrestrial mammals in …

Wildlife Survey Of National Parks To Assess Reptilian Biodiversity, Ajk, Jibran Haider, Inayatullah Malik, Sabiha Shamim

Journal of Bioresource Management

The class Reptilia belongs to phylum Chordata. This group forms a large community of the land vertebrates. However, they remain relatively under-examined. Roll et al. (2017) studied the global distribution of more than 10,000 reptiles. Nearly194 reptilian species have been reported from Pakistan (WWF, n.d.). Five protected parks were studied from February 2008 to May 2010. Dhirkot Nature Reserve (DNR), Banjosa Nature Reserve (BNR), Tolipir National Park (TNP), Pir Chanasi National Park (PCNP) and Pir Lasura National Park (PLNP) were considered. Fifteen species of reptiles were observed in TNP. Ten species of reptiles were recorded from PCNP. Ten species of …

The Neotropical Variegated Squirrel, Sciurus Variegatoides (Rodentia: Sciuridae) In Nicaragua, With The Description Of A New Subspecies, Hugh H. Genoways, Robert M. Timm

University of Nebraska State Museum: Mammalogy Papers

The Neotropical variegated squirrel, Sciurus variegatoides, is represented in Nicaragua by five known subspecies—adolphei, belti, boothiae, dorsalis, and underwoodi. Analyses of morphometrics, color, and color patterns of 394 specimens from throughout the country and all available literature support the retention of these subspecies, but also reveal the presence of a sixth population of these squirrels, which is worthy of description and recognition as a new subspecies. This new subspecies is confined to Isla de Ometepe in Lago de Nicaragua. Variegated squirrels on Ometepe are on average the smallest variegated squirrels in the country …

Cavity Nest Webs As A Template For Studying Non-Trophic Interactions In Invasion Ecology, Joshua M. Diamond

FIU Electronic Theses and Dissertations

Invasive exotic animals are considered destructive forces in cities for preying on and competing with native species. I examined an aspect of competition from a different perspective, focusing on the role of Miami’s rich exotic bird assemblage in its cavity nest web, where a supply of woodpecker-created cavity nests limited by urbanization is the focal point of competition. We located 967 nest trees with 1,864 cavities and determined that woodpeckers successfully nested in this tropical urban region by exploiting standing dead palms (snags). Native upland forests were the most important cover type for woodpeckers but planted landscapes like parks and …

The Intrinsic Value Of Nature, Joanna E. Lambert

Animal Sentience

Treves et al. explain the need to preserve the rights of nonhuman species, human youth, and future generations. Although conservation biology has claimed to have an intrinsic valuation ethic since its inception in the 1980s, many aspects of the field have taken a decidedly anthropocentric and instrumentalist trajectory. This has important consequences for conservation-related policy and practice at all scales: local, regional, and global.

Where Birds Chill: An Assessment Of The Habitat Preferences Of Birds Overwintering In Hudson Valley Forests, Elizabeth Claire Axley

Senior Projects Spring 2019

Many avian species overwinter in eastern North America; however, studies on bird populations are rarely undertaken during this critical survival time, and little is known as to their habitat preferences and foraging behavior. In this observational study, we performed a survey of birds overwintering in the Hudson Valley’s temperate, primarily-deciduous forests, assessing avian populations’ habitat preferences through the vegetative structural variables surrounding overwintering birds as they forage. Our results suggest that high canopy cover is critically important to predicting overwintering bird occupancy on a microhabitat scale. Moreover, overwintering birds preferentially occupy forest plots not dominated by sugar maples, in spite …

The Diversity Of Terrestrial Mammals Surrounding Waterfall At Billy Barquedier National Park, Kelsey Johnson, Jason Apple

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Billy Barquedier is a National Park located in the Stann Creek district of Belize that contains Neotropical vegetation and wildlife. This study was performed to provide a baseline inventory and appearance frequency patterns of the terrestrial mammals located within Zone 1 of the park near a waterfall and to gain a greater understanding of the biodiversity and activity patterns of terrestrial mammals within the park. The methods included camera traps, small Sherman live traps, large live traps, and tracking methods. A non-random sampling method of placing camera traps and live traps on or near human-made or animal-made trails was used …

Relationships Among Biodiversity Dimensions Of Birds In Nebraska, Nadejda Mirochnitchenko

School of Natural Resources: Dissertations, Theses, and Student Research

Biological diversity, or biodiversity, is a multi-dimensional concept that can be decomposed to measure information about taxonomic, phylogenetic, and functional variation within communities. Although the dimensions of biodiversity are interrelated, the assumption that measuring one dimension of diversity can inform about patterns in another dimension does not necessarily follow from theory or empirical study. The relationships among biodiversity dimensions is not well understood, nor how differences among dimensions could influence conservation decision making. Using the avian community as a study system, we explored the relationships of breadth metrics from the taxonomic, phylogenetic, and functional dimensions among each other and across …

Small Mammals Of Family Muridae In Protected Areas Of Pakistan, Fakhra Nazir, Andleeb Batool, Inayat Ullah Malik, Safdar Ali Shah, Sabiha Shamim

Journal of Bioresource Management

Murids to have more than 1300 species globally, forming the largest mammal group. Murids are found nearly everywhere in the world, though many subfamilies have narrower ranges. Murids are not found in Antarctica and many oceanic islands. Five National Parks from Northern areas of Pakistan were physically surveyed. The parks were studied at different times. Dhirkot National Park (DNP) in February 2008, Banjosa National Park (BJNP) from May to June 2009, Pir Lasura National Park (PLNP) from June to July 2009 and Pir Chanasi National Park (PCNP) from April to May 2010. A total of 6 species belonging to the …

Science At Engineer Cantonment, Hugh H. Genoways, Brett C. Ratcliffe, Carl R. Falk, Thomas E. Labedz, Paul R. Picha, John R. Bozell

University of Nebraska State Museum: Mammalogy Papers

Conclusions

It is our contention that Thomas Say, Titian Peale, Edwin James, and their colleagues of the Stephen Long Expedition of 1819–1820 were heavily engaged in scientific research, which took the form of the first biodiversity inventory undertaken in the United States. This accomplishment has been overlooked both by biologists and historians, but it should rank among the most significant accomplishments of the expedition. The results of this inventory continue to inform us today about environmental, faunal, and floral changes along the Missouri River in an area that is known to be an ecotone between the deciduous forests of the …

An Engineer Cantonment Bestiary: The Art Of Titian Ramsay Peale, Hugh H. Genoways, Thomas E. Labedz

University of Nebraska State Museum: Mammalogy Papers

Includes an overview of the work of American nature artist Titian Ramsay Peale as part of the Stephen H. Long Expedition, 1819-1820, at Engineer Cantonment in eastern Nebraska, USA.

Includes textual descriptions and/or reproductions of watercolors and lined drawings by Peale of banded killifish (Fundulus diaphanous), American White Pelican (Pelecanus erythrothynchos), Wood Duck (Aix sponsa), Rough-legged Hawk (Buteo lagopus/Falco lagopus), Sandhill Crane (Grus canadensis tabida), Pectoral Sandpiper (Calidris melanotos), Scarlet Tanager (Piranga olivacea), American Tree Sparrow (Spizella arborea), Yellow-headed Blackbird (Xanthocephalus …

Historical Observations And Identifications Of Plants And Animals In The Vicinity Of Engineer Cantonment In 1819-1820, Hugh H. Genoways, Brett C. Ratcliffe, Carl R. Falk, John R. Bozell

University of Nebraska State Museum: Mammalogy Papers

Historical observations and identifications of plants and animals in the vicinity of Engineer Cantonment in 1819–1820 (James 1822) are shown below in Roman and Roman italic print. Specimens identified through phytoarcheological and zooarcheological analysis of materials and believed to be reasonably associated or contemporaneous with the Long Expedition use of the site (AU4) are shown in boldface. Species present in both the historical and archeological data are marked by an asterisk (*). References used in this compilation include Benedict (1996), Brewer (1970 [1840]), Conant and Collins (1991), Ducey (2000), Evans (1997), Falk et al. (this volume), Genoways et al. (2008), …

Additional Records Of Acanthocephalan Parasites From Arkansas Fishes, With New Records From Missouri Fishes, Chris T. Mcallister, Michael A. Barger, Henry W. Robison

Journal of the Arkansas Academy of Science

Over the last decade, our research consortium has provided information on acanthocephalan parasites of Arkansas vertebrates, including records from some of the state’s fishes. Here, we continue to provide data on new geographic and new host records of acanthocephalans from Arkansas fishes. In addition, for the first time, we report records of acanthocephalans for some Missouri fishes. We document 2 new state records as well as 10 new host records for some fish acanthocephalans.

Niche By Basma Kavanagh, Vivian M. Hansen

The Goose

Review of Basma Kavanagh's Niche.

The Bee Fauna Of The Horse Mountain And Grouse Mountain Region, Humboldt County, California, Carrie Lopez

Cal Poly Humboldt theses and projects

Recent concerns about the ecological well-being of bee communities in California and elsewhere have increased the need for monitoring programs and studies that evaluate the impact of habitat loss and alteration on bee diversity and abundance. Such studies depend critically on the expertise of people trained in taxonomy, but their numbers have declined in recent years. My primary goal was to gain a comprehensive first-hand experience with bee identification by documenting the fauna of a previously unstudied area in the mountains of northwestern California and by writing an identification key, intended for dedicated non-specialists, to the area’s 35 species of …

An Ecological Study Of The Anurans In Tea Plantations In A Biodiversity Hotspot, Lilly M. Eluvathingal

FIU Electronic Theses and Dissertations

Increasing human population size is increasing the demand for resources like timber, oil, tea, coffee, and other crops. Plantation crops mimic some aspects of native habitats, and there are studies that report the presence of some native anuran biodiversity in plantations. I focused on tea plantations in the Western Ghats-Sri Lanka Biodiversity Hotspot and studied the diversity and health of anurans in different habitats found within a tea cultivation area, near Munnar region in the Western Ghats, India. The landscape includes tea bushes, native evergreen shola forest patches, and eucalyptus forest stands. I reviewed 40 studies comparing amphibian species richness …

New Clues To A Mass Extinction: Colby Geologist Robert Gastaldo And Student Researchers Unearth Evidence That Contradicts Prevailing Models About Ancient Die-Offs, Stephen Collins

Colby Magazine

Colby geologists are rewriting deep time history, altering the script of how scientists understand the mother of all mass extinctions—the End-Permian event that occurred approximately 252 million years ago. Or to suggest that they don’t, in fact, understand it.

Biodiversity And You., Garth Woodruff

Faculty Publications

No abstract provided.

Identification Of Taenia Metacestodes From Mongolian Mammals Using Multivariate Morphometrics Of The Rostellar Hooks, Danielle M. Tufts, Nyamsuren Batsaikhan, Michael Pitner, Gábor R. Rácz, Altangerel Tsogtsaikhan Dursahinhan, Scott Lyell Gardner

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Parasite diversity in and among various species of mammals within Mongolia is still poorly understood. The current paper focusses on a small part of the results of the Mongolian Vertebrate Parasite Project (MVPP), which entailed a broad-scale biodiversity survey of the vertebrates and their parasites of the Gobi and Altai regions of Mongolia. We report on the prevalence and morphological variation of larval cestodes of the family Taeniidae that occurred in small mammals that were collected from 2009-2012 from various locations in southern Mongolia. From these metacestodes, we studied both large and small rostellar hooks and analyzed both size and …

Genetic Analyses Determine Connectivity Among Cave And Surface Populations Of The Jamaican Endemic Freshwater Crab Sesarma Fossarum In The Cockpit Country, Manuel Stemmer, Christoph D. Schubart

International Journal of Speleology

The Jamaican freshwater crab Sesarma fossarum (Decapoda: Brachyura: Sesarmidae) is endemic to western central Jamaica where it occurs in cave and surface streams of karst regions. In the present study, we examine the population genetic structure of the species, providing evidence for intraspecific differentiation and genetic substructure among twelve sampled populations. Interestingly, crabs from caves appear genetically undistinguishable from representatives of nearby surface waters, despite previously observed and described morphometric differentiation. In contrast, genetic isolation takes place among populations from rivers and caves belonging to different watersheds. In one case, even populations from different tributaries of the same river were …