Agriculture Commons^™

Extension Agriculture And Natural Resources In The U.S. Midwest: A Review And Analysis Of Challenges And Future Opportunities, Mahdi M. Al-Kaisi, Roger Wesley Elmore, Gerald A. Miller, David Kwaw-Mensah

Department of Agronomy and Horticulture: Faculty Publications

This review addresses key changes in U.S. agricultural extension and future opportunities. Agricultural extension has been a part of the land-grant university (LGU) system for more than 100 years. The Morrill Act of 1862 established the LGU system by authorizing states access to federally controlled land and funding for public institutions offering educational opportunities focusing on agriculture and mechanical arts for farmers and the working class. Current surveys in Iowa reveal changing trends in extension: more than 90% of farmers identified private-sector crop advisers as their primary source for recommendations, whereas more than 80% of those advisors identified Iowa State …

Soybean Yield And Nodulation Response To Crop History And Inoculation, Stephen Mason, Tomie Galusha, Zaher Kmail

Department of Agronomy and Horticulture: Faculty Publications

Soybean [Glycine max (L.) Merr.] inoculation was imposed on a long-term continuous grain sorghum [Sorghum bicolor (L.) Moench] and soybean cropping systems study with and without manure application at Mead, NE. The objective was to determine the influence of 28-yr history of continuous grain sorghum and soybean production, inoculation, and manure on soybean yield and nodulation. Average 2-yr soybean grain yield was 0.5 Mg ha^–1 greater on plots with continuous grain sorghum crop history rather than soybean history, even after this history was broken by 2-yr crop rotation with grain sorghum in the 2 yr previous to …

Soil Moisture Affects Growing-Season Wildfire Size In The Southern Great Plains, Erik S. Krueger, Tyson E. Ochsner, David M. Engle, J. D. Carlson, Dirac L. Twidwell, Samuel D. Fuhlendorf

Department of Agronomy and Horticulture: Faculty Publications

The increasing availability of soil moisture data presents an opportunity for its use in wildfire danger assessments, but research regarding the influence of soil moisture on wildfires is scarce. Our objective was to identify relationships between soil moisture and wildfire size for Oklahoma wildfires during the growing (May-October) and dormant seasons (November-April). We hypothesized that soil moisture influences wildfire size when vegetation is growing but is less important when most vegetation is dead or dormant. Soil moisture, as fraction of available water capacity (FAW), and commonly measured weather variables were determined for 38,419 wildfires from 2000–2012. Wildfires were grouped by …

Distribution Of Herbicide-Resistant Shattercane And Johnsongrass Populations In Sorghum Production Areas Of Nebraska And Northern Kansas, Rodrigo Werle, Amit J. Jhala, Melinda K. Yerka, J. Anita Dille, John L. Lindquist

Department of Agronomy and Horticulture: Faculty Publications

Overreliance on acetolactate synthase (ALS)-inhibiting herbicides for weed control during the 1990s resulted in selection of ALS-resistant shattercane [Sorghum bicolor (L.) Moench ssp. drummondii (Nees ex Steud.) de Wet ex Davidse] biotypes in Nebraska. The objective of this study was to assess the baseline presence of ALS-resistance in 190 shattercane and 59 johnsongrass [Sorghum halepense (L.) Pers.] populations collected across northern Kansas, northwestern Missouri, and southern Nebraska in 2013. In 2014, a preliminary field experiment was conducted to evaluate the presence of herbicide resistance in the aforementioned populations. Treatments consisted of four herbicides (clethodim {2-[1-[[(E)-3-chloroprop-2-enoxy]amino] propylidene]-5-(2-ethylsulfanylpropyl)cyclohexane-1,3-dione}, glyphosate [N-(phosphonomethyl) …

Canola: A Modern Crop For A Modern Era, Kenneth J. Roché

Doctor of Plant Health Program: Dissertations and Student Research

The University of Nebraska-Lincoln Doctor of Plant Health program is a professional doctorate program with a comprehensive approach to plants and agriculture. The program emphasizes a broad interdisciplinary education across all plant-related disciplines, practical learning, research, and experience through internships. For my final required internship, I worked as a senior agricultural research intern with Research Designed for Agriculture (RD4AG) in Montana. RD4AG is a contract research organization based in Yuma, AZ with over thirty-years of experience. During my three month internship at RD4AG in Montana, a large portion of my responsibilities centered on managing regulated canola trials that were undertaken …

Genetic Control Of Morphometric Diversity In The Maize Shoot Apical Meristem, Samuel Leiboff, Xianran Li, Heng-Cheng Hu, Natalie Todt, Jinliang Yang, Xiao Li, Xiaoqing Yu, Gary J. Muehlbauer, Marja C.P. Timmermans, Jianming Yu, Patrick S. Schnable, Michael J. Scanlon

Department of Agronomy and Horticulture: Faculty Publications

The maize shoot apical meristem (SAM) comprises a small pool of stem cells that generate all above-ground organs. Although mutational studies have identified genetic networks regulating SAM function, little is known about SAM morphological variation in natural populations. Here we report the use of high-throughput image processing to capture rich SAM size variation within a diverse maize inbred panel. We demonstrate correlations between seedling SAM size and agronomically important adult traits such as flowering time, stem size and leaf node number. Combining SAM phenotypes with 1.2 million single nucleotide polymorphisms (SNPs) via genome-wide association study reveals unexpected SAM morphology candidate …

Residue Harvest Effects On Irrigated, No-Till Corn Yield And Nitrogen Response, Charles S. Wortmann, Charles A. Shapiro, Marty R. Schmer

Department of Agronomy and Horticulture: Faculty Publications

Crop residue harvest occurs on about 40% of Nebraska’s 3,700,000 ha of corn (Zea mays L.) land, primarily for feeding of beef cattle. Immobilization of applied N is expected to be less with residue harvest due to reduced microbial activity for digestion of high C/N ratio organic material. Residue reduction may affect subsequent crop yield and response to applied N. Field research was conducted at three locations over 2 yr in eastern Nebraska for irrigated, no-till corn following corn to determine residue harvest effects on yield and the economically optimal nitrogen rate (EONR). Study sites had deep silt loam …

Herbicides Applied At Or Shortly After Seeding Are Effective For Weed Control In Seedling Buffalograss, Luqi Li, Matthew D. Sousek, Zachary Reicher

Department of Agronomy and Horticulture: Faculty Publications

Herbicides applied shortly after seeding of buffalograss [Buchloe dactyloides (Nutt.) Engelm.] can help reduce weed pressure and maximize establishment of buffalograss. This study evaluated 12 relatively recently developed herbicides for turf safety and weed control when applied at seeding or 0 or 2 weeks after emergence (WAE) of ‘Bowie’ or ‘Sundancer’ buffalograss. Primary weed species on the site were common purslane (Portulaca oleracea L.), redroot pigweed (Amaranthus retroflexus L.), and/or yellow foxtail [Setaria lutescens (Weigel ex Stuntz) F.T. Hubb.]. Regardless of cultivar, untreated checks had53% weed cover by 6 WAE, whereas most of the herbicide treatments resulted …

Synfind: Compiling Syntenic Regions Across Any Set Of Genomes On Demand, Haibao Tang, Matthew D. Bomhoff, Evan Briones, Liangsheng Zhang, James C. Schnable, Eric Lyons

Department of Agronomy and Horticulture: Faculty Publications

The identification of conserved syntenic regions enables discovery of predicted locations for orthologous and homeologous genes, evenwhennosuchgeneispresent.Thiscapabilitymeansthatsynteny-basedmethodsarefarmoreeffectivethansequencesimilaritybased methods in identifying true-negatives, a necessity forstudying gene loss and gene transposition. However, the identification of syntenicregionsrequirescomplexanalyseswhichmustberepeatedforpairwisecomparisonsbetweenanytwospecies.Therefore,as the number of published genomes increases, there is a growing demand for scalable, simple-to-use applications to perform comparative genomic analyses that cater to both gene family studies and genome-scale studies. We implemented SynFind, a web-based tool that addresses this need. Given one query genome, SynFind is capable of identifying conserved syntenic regions in any set of targetgenomes.SynFindiscapableofreportingper-geneinformation,usefulforresearchersstudyingspecificgenefamilies,aswellas genome-wide data sets of syntenic gene and predicted gene …

A Population Structure And Genome-Wide Association Analysis On The Usda Soybean Germplasm Collection, Nonoy Bandillo, Diego Jarquin, Qijian Song, Randall L. Nelson, Perry Cregan, James Specht, Aaron Lorenz

Department of Agronomy and Horticulture: Faculty Publications

Population structure analyses and genome-wide association studies (GWAS) conducted on crop germplasm collections provide valuable information on the frequency and distribution of alleles governing economically important traits. The value of these analyses is substantially enhanced when the accession numbers can be increased from ~1,000 to ~10,000 or more. In this research, we conducted the first comprehensive analysis of population structure on the collection of 14,000 soybean accessions [Glycine max (L.) Merr. and G. soja Siebold & Zucc.] using a 50KSNP chip. Accessions originating from Japan were relatively homogenous and distinct from the Korean accessions. As a whole, both Japanese and …

Switchgrass Germplasm Resources, Michael D. Casler, Kenneth P. Vogel, Melanie Harrison

Department of Agronomy and Horticulture: Faculty Publications

Switchgrass (Panicum virgatum L.) is an important native grass and dominant member of the tallgrass prairie ecosystem. It is used for conservation, restoration, livestock feed production, and bioenergy feedstock production. The purpose of this review is to describe the biological and geographical basis for switchgrass germplasm diversity and to provide a resource for scientists and outreach personnel to find switchgrass germplasm to meet their needs. Upland and lowland ecotypes represent the most important polymorphism in switchgrass, with distinct but overlapping geographic distributions. Variation in ploidy exists within both ecotypes, with 2n = 4x = 36 the dominant ploidy …

Adding Genetically Distant Individuals To Training Populations Reduces Genomic Prediction Accuracy In Barley, Aaron Lorenz, Kevin P. Smith

Department of Agronomy and Horticulture: Faculty Publications

One of the most important factors affecting genomic prediction accuracy appears to be training population (TP) composition. The objective of this study was to evaluate the effect of genomic relationship on genomic prediction accuracy and determine if adding increasingly unrelated individuals to a TP can reduce prediction accuracy. To accomplish this, a population of barley (Hordeum vulgare L.) lines from the University of Minnesota (lines denoted as MN) and North Dakota State University (lines denoted as ND) breeding programs were used for model training. Predictions were validated using two independent sets of progenies derived from MN  MN crosses …

Community Seed Banks: Origins, Evolution, And Prospects, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

As a survey of contemporary community-level seed banks, this is an excellent compilation and instructive guide. The first section provides an overview of how seed banks originated, their varied goals and activities, several contrasting forms of management, and how they organize and perform to meet these goals. An intriguing claim in the book is that the concept of “seed banks is only some three decades old,” while in fact the practice of saving, preserving, and exchanging seed within a community is probably as old as human communities themselves.

Organized seed banks often serve specific functions: preserving seeds, providing seed access …

Nitrogen And Water Effects On Canopy Sensor Measurements For Site-Specific Management Of Crops, Nicholas C. Ward

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Water and nitrogen (N) are undoubtedly the two largest agricultural inputs globally. Coupled with advances in site-specific management technology their integration into production agriculture will allow for the most efficient use these crop input resources. Active canopy sensors offer the ability to measure biophysical plant traits rapidly and make assessments about plant status. Specifically, optical sensor measurements of light reflectance assess plant N status allowing for in-season and on-the-go N recommendations and applications; while infrared thermometers (IRT) measurement of canopy temperature can be used a tool for irrigation management. To evaluate how these technologies work among different plant stress environments …

Land Use And Water And Soil Management Practices Impacts On Potential Groundwater Recharge In Loess Regions Of South Central Nebraska, Gustavo Bosch-Rubia

Department of Biological Systems Engineering: Dissertations and Theses

Sustainability of agro-ecosystems must consider land use and water and soil management effects on groundwater recharge. Water flow beneath the plant root zone through the intermediate vadose zone determines potential groundwater recharge. Different land uses, water and soil management practices control deep percolation as a result of changes on evapotranspiration and infiltration. This study of the impact of surface activities on deep percolation was conducted at six locations across Nebraska: Two center-pivot irrigated no-till planting systems fields were compared with one tilled center-pivot irrigated field, a furrow irrigated field with multiple tillage treatments, an eco-fallow dryland farming system, and a …

Occurrence Of An Herbicide-Resistant Plant Trait In Agricultural Field Margins, Karla L. Gag, David J. Gibson, Bryan G. Young, Julie M. Young, Joseph L. Matthews, Stephen C. Weller, Robert G. Wilson

Department of Agronomy and Horticulture: Faculty Publications

Agricultural environments allow study of evolutionary change in plants. An example of evolution within agroecological systems is the selection for resistance to the herbicide glyphosate within the weed, Conyza canadensis. Changes in survivorship and reproduction associated with the development of glyphosate resistance (GR) may impact fitness and influence the frequency of occurrence of the GR trait. We hypothesized that site characteristics and history would affect the occurrence of GR C. canadensis in field margins. We surveyed GR occurrence in field margins and asked whether there were correlations between GR occurrence and location, crop rotation, GR crop trait rotation, crop type, …

Mangiferin As A Biomarker For Mango Anthracnose Resistance, Herma Pierre

FIU Electronic Theses and Dissertations

Mangos (Mangifera indica L.) are tropical/subtropical fruits belonging to the plant family Anacardiaceae. Anthracnose is the most deleterious disease of mango both in the field and during postharvest handling. It is most commonly caused by the Colletotrichum gloeosporioides complex. Mangiferin, a xanthanoid compound found in at least twelve plant families worldwide (Luo et al., 2012), is present in large amounts of the leaves and edible mangos. Even though this compound plays a pivotal role in the plant’s defense against biotic and abiotic stressors, no correlations been made between the compound and mango anthracnose resistance.

Mangos were collected, grouped …

Comparing Yield Monitors With Weigh Wagons For On-Farm Corn Hybrid Evaluation, Bjorn P. Nelson, Roger Wesley Elmore, Andrew W. Lenssen

Department of Agronomy and Horticulture: Faculty Publications

For many years, on-farm yield evaluations of corn (Zea mays L.) hybrids were done with weigh wagons, handheld moisture testers, and measuring wheels. Today, most combines have continuous flow yield and moisture sensors. Published research results comparing the accuracy of combine-mounted sensor systems with that of weigh wagons are limited for on-farm corn hybrid evaluation. This study examined the accuracy of combine-mounted yield sensors with traditional weigh wagon methodology in on-farm corn hybrid strip trials. Data from combine-mounted sensors for plot weight, moisture percentage, and yield were compared with weigh wagon weight, handheld moisture testers, and calculated yield …

Genetic Engineering Online Lessons Improve Teaching And Increase Knowledge And Accepting Attitudes Among Students, Grace Troupe

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Genetic engineering has been used in the production of food in the U.S. for nearly three decades, however, science literacy in genetic engineering among consumers is still low. To address this problem, an online resource called The Journey of a Gene (passel.unl.edu/ge) was created to help incorporate genetic engineering education in high school and college curriculums. Here we report two studies conducted to evaluate the effectiveness of The Journey of a Gene in 1) improving student knowledge and attitudes about genetic engineering and 2) helping teachers increase their knowledge as well as quantity and quality of genetic engineering instruction. In …

Career: Dynamics Of Hierarchical Householdstructured Epidemiological Models, David Hiebeler

University of Maine Office of Research Administration: Grant Reports

Mathematical and computational models will be used to study populations hierarchically segregated into groups referred to as "households". These households may represent patches within an agricultural field, fields within a landscape, dorms within a school, schools within a city, cities within a region, or even subnetworks within larger computer networks. Population models and epidemiological models will be explored within this framework, complementing other work with lattice-structured populations. In the models, interactions within a household occur much more often than interactions between different households. Primary goals of the models are to better understand how and why spatially targeted and/or clustered treatments …

Cassava (Manihot Esculenta Crantz) Tuber Quality As Measured By Starch And Cyanide (Hcn) Affected By Nitrogen, Phosphorus, And Potassium Fertilizer Rates, Ivan Bernardo Cuvaca, Neal Eash, Svetlana Zivanovic, Dayton Mcgregor Lambert, Forbes R. Walker, B. Rustrick

Biosystems Engineering and Soil Science Publications and Other Works

Cassava (Manihot esculenta Crantz) is an important subsistence crop for many poor rural families in Africa. Cassava contains cyanogenic glucosides (linamarin and lotaustralin) which liberate hydrogen cyanide (HCN) during tuber processing. Once liberated, HCN attaches to the processed tuber. Continuous consumption of processed tuber containing high HCN concentration coupled with low protein intake causes Konzo – a paralyzing disorder that impacts children and women of childbearing age. There are ways to reduce HCN concentration during tuber processing; however, this can also reduce the overall starch content in the cassava tuber. A study comprising twenty treatments consisting of different combinations of …

Microsatellite Variations Of Elite Setaria Varieties Released During Last Six Decades In China, Guanqing Jia, Xiaotong Liu, James C. Schnable, Zhengang Niu, Chunfang Wang, Yuhui Li, Shujun Wang, Suying Wang, Jinrong Liu, Erhu Guo, Hui Zhi, Xianmin Diao

Department of Agronomy and Horticulture: Faculty Publications

Crop improvement is a multifaceted micro-evolutionary process, involving changes in breeding approaches, planting configurations and consumption preferences of human beings. Recent research has started to identify the specific genes or genomic regions correlate to improved agronomic traits, however, an apparent blank between the genetic structure of crop elite varieties and their improving histories in diverse modern breeding programs is still in existence. Foxtail millet (Setaria italica) was one of the earliest cereal crops to be domesticated and served as a staple crop for early civilizations in China, where it is still widely grown today. In the present trial, …

Impact Of Arbuscular Mycorrhizal Fungi On The Physiology Of Maize Genotypes Under Variable Nitrogen And Phosphorus Levels, Roberto Crespo

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

It is important to increase our understanding of AM fungal and maize genotype interactions, the impact of N and P fertilization and water condition on the symbiosis, and on the physiology and nutritional status of maize plants. In two greenhouse experiments AM inoculated plants exhibited root colonization values around 70% which was confirmed by the presence of the AM lipid biomarker (C16:1cis11). Nitrogen fertilization increased AM root colonization, but only compared to unfertilized plants. Root colonization and biomarker concentration in root and soil were similar among inoculated maize genotypes across conventional and drought tolerant hybrids. Mycorrhizal inoculation had a positive …

Soil Total Organic Carbon And Farmers’ Perceptions Associated With Bokashi Application In Cerro Punta, Panama, Emma Searson

Independent Study Project (ISP) Collection

Sustainable use and maintenance of agricultural soils are important for maintaining long-term agricultural productivity and environmental quality. These issues are especially important in Cerro Punta, known as the breadbasket of Panama, which is experiencing severe erosion. While current practices and agrochemical usage damage soil health and function over time, application of organic material improves soil physic-chemical properties such as nutrient and total organic carbon (TOC) content. Bokashi, a fermented organic soil amendment with effective microorganisms (EM), is thought to be especially beneficial due to its ability to augment populations of soil microbes, which deliver plant-available nutrients to crops and improve …

Comparing Avian Diversity And Anthropogenic Disturbance At Sendero Los Quetzales Cerro Punta, Panamá, Sloane Merdinger

Independent Study Project (ISP) Collection

This report summarizes the survey of land and avian diversity along a transect that runs from the exterior to the interior of the Los Quetzales Trail of Parque Nacional Volcán Barú in Cerro Punta, Chiriquí, Panamá. The region of Cerro Punta is Panamá’s primary producer of produce and also home to one of the most biodiverse land reserves in the world. Despite protection efforts the area is continuously threatened by human development. The study juxtaposes calculated Shannon-Wiener Biodiversity Indices across graduated levels of anthropogenic disturbance to determine if there is a significant difference in biodiversity between areas with low, intermediate, …

Evaluation And Association Mapping Of Resistance To Tan Spot And Stagonospora Nodorum Blotch In Adapted Winter Wheat Germplasm, Zhaohui Liu, Ibrahim El-Basyoni, Gayan Kariyawasam, Guorong Zhang, Allan Fritz, Jana Hansen, Francois Marais, Andrew Friskop, Shiaoman Chao, Eduard Akhunov, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Tan spot and Stagonospora nodorum blotch (SNB), often occurring together, are two economically significant diseases of wheat in the Northern Great Plains of the United States. They are caused by the fungi Pyrenophora tritici-repentis and Parastagonospora nodorum, respectively, both of which produce multiple necrotrophic effectors (NE) to cause disease. In this work, 120 hard red winter wheat (HRWW) cultivars or elite lines, mostly from the United States, were evaluated in the greenhouse for their reactions to the two diseases as well as NE produced by the two pathogens. One P. nodorum isolate (Sn4) and four Pyrenophora tritici-repentis isolates (Pti2, …

Proceedings Of The 42nd Annual Meeting, Southern Soybean Disease Workers (March 11-12, 2015, Pensacola Beach, Florida), Craig Rothrock, Ed Sikora, Trey Price, Danise Beadle, Myra Purvis, Tom Allen, Loren Giesler

Southern Soybean Disease Workers: Conference Proceedings

Contents

Schedule

Southern United States Soybean Disease Loss Estimates for 2014. TW Allen, JP Damicone, NS Dufault, TR Faske, DE Hershman, CA Hollier, T Isakeit, RC Kemerait, NM Kleczewski, SR Koenning, HL Mehl, JD Mueller, C Overstreet, P Price, EJ Sikora, and H Young

Graduate student competition (Trey Price, moderator)

Effect of Secondary Nutrient Applications on Suppression of Charcoal Rot in Soybean. T Wilkerson, M Tomasu-Peterson, BR Golden, S Lu, AB Johnson, and TW Allen

Molecular Characterization of the G143A Mutation Leading to QoI Fungicide Resistance among Fungal Pathogens Causing Cercospora Leaf Blight and Purple Seed Stain of Soybean. S …

Evaluating A Satellite-Based Seasonal Evapotranspiration Product And Identifying Its Relationship With Other Satellite-Derived Products And Crop Yield: A Case Study For Ethiopia, Tsegaye Tadesse, Gabriel B. Senay, Getachew Berhan, Teshome Regassa, Shimelis Beyene

Department of Agronomy and Horticulture: Faculty Publications

Satellite-derived evapotranspiration anomalies and normalized difference vegetation index (NDVI) products from Moderate Resolution Imaging Spectroradiometer (MODIS) data are currently used for African agricultural drought monitoring and food security status assessment. In this study, a process to evaluate satellite-derived evapotranspiration (ETa) products with a geospatial statistical exploratory technique that uses NDVI, satellite-derived rainfall estimate (RFE), and crop yield data has been developed. The main goal of this study was to evaluate the ETa using the NDVI and RFE, and identify a relationship between the ETa and Ethiopia’s cereal crop (i.e., teff, sorghum, corn/maize, barley, and wheat) yields during the main rainy …

Selection For Silage Yield And Composition Did Not Affect Genomic Diversity Within The Wisconsin Quality Synthetic Maize Population, Aaron Lorenz, Timothy M. Beissinger, Renato Rodrigues Silva, Natalia De Leon

Department of Agronomy and Horticulture: Faculty Publications

Maize silage is forage of high quality and yield, and represents the second most important use of maize in the United States. The Wisconsin Quality Synthetic (WQS) maize population has undergone five cycles of recurrent selection for silage yield and composition, resulting in a genetically improved population. The application of high-density molecular markers allows breeders and geneticists to identify important loci through association analysis and selection mapping, as well as to monitor changes in the distribution of genetic diversity across the genome. The objectives of this study were to identify loci controlling variation for maize silage traits through association analysis …

First Approximations Of Prescribed Fire Risks Relative To Other Management Techniques Used On Private Lands, Dirac L. Twidwell, Carissa L. Wonkka, Michael T. Sindelar, John R. Weir

Department of Agronomy and Horticulture: Faculty Publications

Fire is widely recognized as a critical ecological and evolutionary driver that needs to be at the forefront of land management actions if conservation targets are to be met. However, the prevailing view is that prescribed fire is riskier than other land management techniques. Perceived risks associated with the application of fire limits its use and reduces agency support for prescribed burning in the private sector. As a result, considerably less cost-share support is given for prescribed fire compared to mechanical techniques. This study tests the general perception that fire is a riskier technique relative to other land management options. …