Life Sciences Commons^™

Bio-Agronomic Evaluation Of Lolium Multiflorum Populations Collected In Irrigated Plains Of Northern Italy, P Rotili, G Gnocchi, C Scotti, A Sererna

IGC Proceedings (1977-2023)

In the irrigated plains of Lombardy the continuous elimination of the permanent meadows and their replacement with the maize imposes the collection and conservation of Lolium multiflorum. Twenty seven populations, collected in the Milano-Lodi-Cremaarea, were evaluated in greenhouse, in concrete boxes 150 cm long, 40 cm high and 25 cm wide. Distance between the plants on the rows cm 2.5 (density 350 plants/m2). Dry forage yield, earliness and mortality were studied. Concerning dry forage yield there is not difference between the collected populations. On the contrary, a significant difference was observed between the whole set of collected populations and the …

Assessment Of Dominant Shark And Ray Species And Their Size At Brondong And Muncar Ports, East Java, Indonesia, Tri Djoko Lelono, Gatut Bintoro, Arief Setyanto, M. Arief Rahman, Desy Setyoningrum, Naufal Hilda Bahtiar, Hanifa Ramadhani, Tawang Firmansyah, Hasan Syaiful Rizal

Journal of King Abdulaziz University: Marine Science

Shark and ray species are both limited in number and distribution and require time to mature and reproduce, making these species extremely vulnerable to mass exploitation as a resource. Based on the identification results, Muncar Port Banyuwangi had 26 species from 490 ray samples, and Brondong Port Lamongan had 28 species from 1830 ray samples. Fifteen species of rays were found only in Brondong, 17 species of rays were found only in Muncar, and as many as 13 were found in the two sample sites. As for sharks in Muncar, 38 out of 679 species were Brondong samples and 22 …

Analyzing Human - Nonhuman Primate Conflict Mitigation Techniques In Mto Wa Mbu, Northern Tanzania, Lil Adams

Undergraduate Theses, Capstones, and Recitals

Human-wildlife conflict is a widespread challenge faced by those living in regular contact with wildlife that can have profound impacts on livelihood outcomes for humans, wildlife, and their shared environment (Barua et al., 2013; Blackie, 2023). Human – non-human primate conflict is particularly crucial due to primates’ high capacity to live among human populations (Chapman & Chapman, 1990; Alberts & Altmann, 2006; Reader et al., 2011; Sinha & Vijayakrishnan, 2017), and is currently on the rise due to increasing contact between human and non-human primates (Hockings, 2016; Uddin et al., 2020). To characterize and analyze techniques currently being used to …

United Seas For Resilient Reefs: A Blueprint For Coral Conservation Through International Cooperation, John J. Bohorquez, Maoz Fine, Dana I. Grieco, David A. Gill, Ali Al-Swalimih, Jacqueline Padilla-Gamino, Isaiah W. Bolden, Margaux Hein, Callum Backstrom, Melanie Mcfield, Raphael Martinez, Benjamin Midberry, Fahd Al-Guthmy, Ellen K. Pikitch, Natalia Benejam, Chen Azulay, Britt Ronen, Oren Levy, Anne Mcelroy, Karine Kleinhaus

School of Marine & Atmospheric Sciences Faculty Publications

Coral reefs are one of Earth’s most vital and threatened ecosystems. They protect coastlines, generate billions of dollars of tourism revenue, support valuable fisheries, and contribute to the development of vital medicines. Yet half of the world's coral reefs have been lost in the last 50 years, and 90% of remaining reefs are projected to die off by the middle of this century, mainly due to warming seas from climate change.

Despite these challenges there is reason for hope. Some coral reefs – such as in the northern Red Sea and Gulf of Aqaba – have demonstrated remarkable resilience to …

Field Journal: The Excluded Middle, Carrie E. Kouts

Masters Theses

What does it look like to engage with organisms and landscapes at the periphery of anthropocentric value structures? How does one break the internalized myth that the “built” environment is excluded from the natural world? When does a hyper-mobile and hyper-commodified society confront the exponential crisis of animal death? Within this series of journal entries, field notes, collection observations, weird prose, and sensory musings, one will find questions on the nature of being human and the complex narratives of care we encounter in a world shared with more-than-humans. Each handwritten vignette and photograph from daily life weaves a non-linear and …

Comparative Methylation Analyses Across Juglans Species To Investigate Epigenetic Contributions To Fungal Resistance, Keertana Chagari

Honors Scholar Theses

Juglans cinerea (butternut) is a critically threatened North American tree species experiencing severe declines due to the fungal pathogen Ophiognomonia clavigignentijuglandacearum. In contrast, its Asian relative, Juglans ailantifolia (Japanese walnut), shows natural resistance. To investigate the genomic and epigenetic factors underlying this difference, we constructed and analyzed high-quality, chromosome-level genome assemblies for both species from long-read sequencing data (J. ailantifolia: 527Mb; J. cinerea: 586Mb), focusing on transposable element (TE) content, DNA methylation patterns, and regulation of pathogen resistance genes (PRGs).

Repeat analysis revealed that J. cinerea has a slightly higher overall transposable element (TE) content, with …

Adaptation And Discovery In The Ethiopian Highlands: Testing Rules, Cryptic Shrews, And Patterns Of Montane Mammal Diversity, Evan W. Craig

Graduate Doctoral Dissertations

Montane landscapes of the Horn of Africa harbor exceptional but incompletely documented biodiversity. Focusing on rodents and shrews—the dominant but least studied of Ethiopia’s high-elevation fauna—this dissertation integrates repeat faunal surveys, genomic taxonomy, and phylogenetically informed modelling to clarify how small mammals distribute, diversify, and morphologically adapt across steep elevational gradients.

A century‐scale resurvey of Simien Mountains National Park (1927-2015) revealed significant upward range shifts for multiple species and a persistent mid-elevation richness peak, implicating warming temperatures as a driver of community reassembly. Museomics using genome-skimming and craniodental morphometrics subsequently uncovered a deeply divergent miniature shrew lineage within the Crocidura …

A Floristic Study Of The Vascular Flora Of The Brokeoff Mountains, Southcentral New Mexico, Bryana L. Olmeda, Harpo Faust, Hannah E. Marx

Biology ETDs

The vascular flora detailed here describes 438 km² (169 mi²) of the Brokeoff Mountains of southeastern New Mexico. The Brokeoffs are part of the northern extent of the Chihuahuan Desert, the largest desert in North America and one of the ecoregions least represented in botanical collections. Prior to 2023, only 254 plant collections were known from the study site, representing roughly 1.5 collections per 2.59 km² (1 mi²), despite strong research interest in its neighboring Guadalupe Mountains. Over two field seasons, 1920 plant collections were made, over 81 days of field work conducted, in …

Balancing Burrowing Owl (Athene Cunicularia Hypugaea) Protections While Maintaining Renewable Energy Development Within The San Joaquin Valley, Madison Lenzi Mcginn

Master's Projects and Capstones

Balancing the needs of wildlife and people has long been a complex challenge. The San Joaquin Valley exemplifies this tension, as space for agriculture and urbanization compete for land use of native grasslands– often resulting in the conversion of grasslands for agriculture fields, commercialized areas, or energy development. With an increasing number of agricultural landscapes going fallow and the passing of SB-100 in 2018, solar farm development has emerged as an attractive option to offset financial losses from unproductive farmland. However, the same landscapes favored for solar development also provide suitable habitat for sensitive species such the western burrowing owl …

Assisted Reproductive Technologies For Southern Cricket Frogs (Acris Gryllus), Audrey Grace Koltz

Honors Theses

Amphibians are facing the most drastic biodiversity declines of all vertebrates, with an estimated 41% of amphibians threatened with extinction. Captive breeding programs employ a variety of assisted reproductive technologies including environmental manipulation, hormonal therapies, artificial fertilization, and gamete preservation to augment vulnerable populations and optimize genetic diversity. Amphibians require a species-specific combination of environmental, social, and physiological cues to reproduce, which makes universal and successful captive breeding programs especially elusive. Here, I investigate assisted reproductive technologies for a small frog species, the southern cricket frog (Acris gryllus). Establishing successful methods for southern cricket frogs may yield promising results for …

Demography Of Alligator Snapping Turtles (Macrochelys Temminckii) Along A Fishing Pressure Gradient, Luke T. Micek

Electronic Theses and Dissertations

Passive fishing gear is a threat to the alligator snapping turtle (Macrochelys temminckii). The spatio-temporal persistence of this threat and its impacts on M. temminckii populations has not been quantified. I quantified the density of passive fishing gear and the demographic parameters of M. temminckii along a fishing pressure gradient in East Texas streams. Most gear was abandoned and illegally deployed, with densities varying seasonally. Detectability of passive fishing gear declined with increasing gear age, water depth, and volume, but increased with increasing precipitation. Macrochelys temminckii catch per unit effort, abundance, and survival was lower at sites with …

Genomic Structure Among Populations Of A Regionally Rare Perennial Plant Indicates The Need For Reevaluation Of Management Units, Cheyenne Moore, Angela J. Mcdonnell, Scott Schuette, Christopher T. Martine

Faculty Journal Articles

Conservation of rare species often relies on the delineation of management units and genomic tools can now be applied for this purpose. However, this is not as common on a local scale, where populations are often small and fragmented, despite the utility of informing conservation and management practice at the regional level. We use a genotyping by sequencing (GBS) approach to assess the perennial riparian plant species Baptisia australis (Fabaceae) in Pennsylvania, where the taxon is at the edge of its natural distribution and considered threatened. In this system, we investigate whether sampled subpopulations exhibit genetic structure. We find that …

Using Satellite Tracking And Stable Isotopes To Characterize The Movements, Core-Use Areas, And Distribution Of Loggerhead And Green Turtles Nesting In South Florida, Usa: Internesting, Foraging, And Migration, Glenn D. Goodwin

All HCAS Student Capstones, Theses, and Dissertations

The movements of animals in response to environmental variation influence the fitness of individuals and drive major ecological processes, while also varying their exposure level to anthropogenic risks. Understanding the movements and spatial distribution of imperiled species is critical for developing effective conservation strategies. This can be difficult for wide ranging and highly migratory species, such as sea turtles. Throughout their adult life stages, the females of most sea turtle species spend the majority of their time in their foraging areas for multiyear intervals between nesting periods. These foraging areas are typically widely dispersed and variable within nesting populations. To …

Characterizing Successional Dynamics And Host Impacts On The Big Sagebrush Leaf Microbiome, Jacob A. Heil

Boise State University Theses and Dissertations

The leaf microbiome contributes to the functioning of Earth’s ecosystems through interactions with host plants, modifying their health, for better or for worse. The leaf microbiome contains bacteria, fungi, and other microorganisms that interact with each other and are subject to the processes governing community assembly. Microbial community assembly on the leaf is influenced by host plant characteristics, interactions between the different community members, the selective and dispersal-mediated effects of the weather, and time. To study the effects of a leaf microbiome on its host plant it is first important to characterize it; observing the species present and how they …

Assessing Phenotypic Variation Across Generations Of Iberodes Littoralis Under Climate Change, Mariangel M. Fernandez Silva

Electronic Theses, Projects, and Dissertations

The consequences of climate change and anthropogenic activity have decreased wildlife biodiversity. Plants are particularly vulnerable to climate change due to their large biomass on the planet and sessile nature. A particularly useful method for plants to cope with environmental changes is phenotypic plasticity. Adjusting morphological traits through plasticity can help plants cope with environmental changes. Furthermore, plastic responses can be passed down through methods such as changes in DNA sequence or epigenetic modifications.

Our research project focuses on an herb, Iberodes littoralis, a species of concern native to the Siberian Peninsula with approximately thirteen extant populations. The data that …

Revised Phylogeography Of The Common Brushtail Possum (Trichosurus Vulpecula) Reveals New Insights Into Genetic Structure Across Australia, Shelby C. Middleton, Robert A. Davis, Kenny J. Travouillon, Anna J.M. Hopkins, Harriet R. Mills, Linette S. Umbrello

Research outputs 2022 to 2026

Understanding genetic relationships within species is essential for identifying distinct genetic lineages and informing conservation strategies, particularly for species with fragmented or widespread geographic distributions. One such widespread species that has suffered declines across Australia, despite remaining common in some areas, is the common brushtail possum (Trichosurus vulpecula), a nocturnal and arboreal marsupial. Previous genetic studies on brushtail possums had limited sampling, which has precluded a comprehensive assessment of the relationships within the species and genus. Using both single nucleotide polymorphism markers and the mitochondrial cytochrome b gene, this study employed phylogenetics, ancestry coefficients, and tested genetic differentiation, to examine …

All Stressed Out: An Investigation On The Effects Of Environmental Stressors On The Northern Leopard Frog (Rana Pipiens), Ella C. Wittmuss

Honors Thesis

Corticosterone (CORT) is the primary glucocorticoid in many vertebrates, including mammals, birds, reptiles, and amphibians. When an organism is exposed to external or internal stressors, CORT levels often increase (Rich & Romero, 2005; Titon et al., 2021). An increase in CORT can cause adverse physiological effects such as slower growth, malformations in different parts of the body, and specific blood sugar diseases such as diabetes (Glennemeier & Denver, 2002; Tarlow &Blumstein, 2007). CORT levels are indicators of survival, growth, and reproduction in larval amphibians. Many species, including our model organism, the Northern Leopard Frog (Rana pipiens), are often subjected to …

Demography And Habitat Associations Of The Basalt Cactus Pediocactus Nigrispinus, Zarha S. Dillon-Zuppelli, Mary E. Poulson, Eric A. Graham

Biology Faculty Scholarship

Cacti are iconic members of arid ecosystems. Pediocactus nigrispinus is a species of cactus endemic to the Pacific Northwest and has been listed as a sensitive species due to its vulnerability to habitat loss. Best conservation methods for this species are poorly understood, due in part to a limited understanding of its demography and habitat associations that may help define its occurrence. A demographic study from four plots in Washington State was implemented in 2016 to provide a baseline of the population dynamics for P. nigrispinus and to enhance conservation efforts for this sensitive species. Five years of size, fecundity, …

Conservación Biológica Harakbut: Estudio De Caso Ori’Numba, Anya Held

Peru: Indigenous Peoples and Globalization

Through interviews, observations, and bibliographic research, this project investigates the Indigenous-based conservation project of Ori’Numba Garden. In 2018, the Tayori family moved to Ori’Numba and began transforming it from a former livestock farm into a holistic conservation project. The paper details the history of Ori’Numba and the process of its creation, the modern and traditional agricultural techniques used in the garden, a register of the pineapple and native bee species, and some of the relevant Harakbut mythology. Ori’Numba clearly demonstrates that there is Indigenous conservation biology, not just “indigenized” Western conservation biology.

The Sustainability Stones: Culturally Embedded Conservation Strategies And Their Vulnerability In Maupiti, French Polynesia, Russell Fielding, Fiona Gimenez

Honors College Faculty Publications

This paper explores culturally embedded conservation strategies through the lens of the traditional agroforestry and fisheries cycles in Maupiti, French Polynesia. By pairing certain breadfruit cultivars with specific fish species, the island’s community created a culinary system that regulates the seasonal consumption of marine resources, making the sustainable use of those resources more likely. While modern pressures such as reduced breadfruit diversity, competition with imported foods, and climate change have weakened these traditional practices, they remain an example of local ecological knowledge guiding conservation. The study highlights the threat of losing sustainable resource-use practices and biodiversity as both biodiversity and …

Assessment Of Fish Biodiversity Of The Cimandiri Watershed, West Java, Indonesia, Rudhy Gustiano, Haryono Haryono, Gema Wahyudewantoro, Krismono Krismono, Rusdianto Rusdianto, Firman M. Nur

Makara Journal of Science

Information on the fish biodiversity of the Cimandiri Watershed is incomplete, and human activities and anthropogen-ic impacts pose a significant threat to this biodiversity. The purpose of this study was to assess the biodiversity of fish in the Cimandiri Watershed. The results indicated that fish biodiversity in the area included 104 species belonging to 49 families. There were 26 species in the upstream area, 47 species in the middle area, and 61 species in the downstream area. Forty-three species were native to Indonesia, and 7 of the native fish were endemic to the area. There were 11 introduced species belonging …

The Effect Of Temperature And Vegetative Substrate On The Short-Distance Dispersal Behavior Of An Invasive Weevil (Coleoptera: Curculionidae) To A Protected Dune Thistle, Alyssa S. Hakes, Tina Czaplinska, Monica Paniagua-Montoya

The Great Lakes Entomologist

The invasion of a seed-eating weevil, Larinus carlinae (Olivier, 1807) poses a threat to the persistence of native Pitcher's thistle (Cirsium pitcheri), a federally-threatened plant in sand dune communities of the western Great Lakes. At Whitefish Dunes (Sturgeon Bay, WI. USA), seed predation by weevils is higher for thistles surrounded by native marram grass (Ammophila breviligulata) than for those located in sandy habitats. In this study, we observed how the local abiotic and biotic environment affects the short-distance dispersal behavior of L. carlinae. Weevils were captured on site and individually released on the sand approximately …

A Survey Of Native Bees (Hymenoptera: Anthophila) At Lakeplain Prairie And Prairie Fen Habitats In Michigan, Logan M. Rowe, Zachary M. Portman, David Cuthrell, Dan Cariveau, Meredith Holm

The Great Lakes Entomologist

Michigan’s lakeplain prairie and prairie fen natural communities contain refugia for many at-risk species of insects, including species that are listed at the federal and state level. Wild bees are a group of insects crucial for maintaining robust plant-pollinator communities. Numerous species of bees are presumed to be in decline. However, baseline community surveys are lacking and needed to document the status of species occupying these natural communities. In 2021, Michigan Natural Features Inventory completed wild bee surveys in lakeplain prairie (lakeplain wet-mesic prairie and lakeplain wet prairie) and prairie fens in Michigan using a combination of aerial netting and …

Sparse Seagrass Meadows Are Critical Dugong Habitat: A Novel Rapid Assessment Of Habitat-Wildlife Associations Using Paired Drone And In-Water Surveys, Nicole E. Said, Christophe Cleguer, Paul Lavery, Amanda J. Hodgson, Connor Gorham, Julian A. Tyne, Ankje Frouws, Simone Strydom, Johnny Lo, Holly C. Raudino, Kelly Waples, Kathryn Mcmahon

Research outputs 2022 to 2026

Understanding the fine-scale behavioural and feeding ecology of marine megafauna is imperative for effective management of their habitat areas; however, obtaining the relevant data can be both costly and challenging. Here we integrate the use of small drones for dugong surveys with underwater benthic habitat assessment techniques at the local spatial scale (∼30 km2), to determine the drivers of dugong (Dugong dugon) distribution across three locations in the Pilbara, Western Australia. Paired assessment data was collected three times over two years. Benthic habitat (percent cover), seagrass nutritional quality and environmental parameters (temperature, water clarity, water current, water depth) were tested …

Game Production On Private Land In South Africa, J C. Pauw, M J.S Peel

IGC Proceedings (1977-2023)

The game industry on private land in South Africa has grown considerably in the last 30 years, resulting in a greatly increased biodiversity on private rangeland. However, animals are not domesticated and management is difficult. Management becomes even more complex because commercial game production normally involves a number of species, including domestic stock, in the same production system. Mixed livestock-game ranching holds certain advantages for management and is generally perceived to be more profitable than either alone. Because of human preferences, a lack of clearly defined management objectives and lack of practical management recommendations, veld is generally heavily utilised and …

Conservation Of Biodiveristy In Managed Rangelands, With Special Emphasis On The Ecological Effects Of Large Grazing Ungulates, Domestic And Wild, Patrick Duncan, Peter J. Jarman

IGC Proceedings (1977-2023)

Biodiversily with its different components (genes, species and ecosystems) is defined in relation to rangelands, whose Importance in its conservation is described. At the fine scale grasslands are much more diverse than tropical rain forest, and are comparably diverse at a regional scale, at least in Africa. Rangelands are crucially important world wide for 1he conservation of plants, and also for birds and large mammalian herbivores. Large ungulates (and other large herbivores) ace "keystone" species in these·ecosystems, playing a crucial role in the maintenance of diverse communities of plants, birds and invertebrates associated with such grasslands. Modification of the natural …

Ramla, The Pool Of The Arches: New Evidence For The Water Inlet Into The Pool (Pp. 125–161), Ron Toueg, Yael D. Arnon

'Atiqot

The Pool of the Arches in Ramla has been studied architecturally and historically, but never tested archaeologically. Large-scale conservation works at the site offered a rare opportunity for an archaeological examination. Two areas were opened with the aim of revealing the water inlet into the pool and to resolve the reason for the construction of the pool at this location. Based on pottery finds, it seems that the pool ceased to be used during the Tulunid regime, in the late ninth or the beginning of the tenth century CE. This dating matches the date in which the Umayyad aqueduct ceased …

Anastylosis Of The Obelisk In The Eastern Circus At Caesarea Maritima (Pp. 175–192), Yoram Sa‘Ad

'Atiqot

In the center of the Eastern Circus at Caesarea, a fallen obelisk was found broken, in three parts. Considering its importance and special nature, it was decided to raise it on its original location. To do so, a committee of experts, including historians, archaeologists, architects, engineers and conservators, was consulted. The article illustrates the engineering plan, the decision-making processes and the outcome of the anastylosis.

The Ottoman Building In The Boverel Quarter, ‘Akko (Pp. 187–191), Yael Alef

'Atiqot

The Ottoman (WIZO) building in the Old City of ‘Akko was documented by the author as a basis for its conservation. It is of the Central-Hall House type that developed in Lebanon from the iwan house, appearing in Palestine in the last quarter of the nineteenth century CE. Some 120 houses of this type were documented in the Old City of ‘Akko, comprising about 12% of the total number of houses in the Old City, and hence its significance in shaping the urban character of the city. No historical evidence was found for dating the WIZO House, and therefore its …

Climate Influence On Both Spatial And Temporal Patterns Of Rocky Intertidal Community Structure In San Diego, California, Emily Jenkins

Theses

The rocky intertidal ecosystem, the coastal area between high and low tides, serves as a critical buffer between land and sea. This ecosystem supports a diverse array of species and provides rich opportunities for exploration and education. With the influence of climate change, this ecosystem faces significant shifts in species distribution, resilience and recovery from environmental disturbances, as well as habitat loss (Jackson & McIlvenny 2011; Jueterbock et al. 2013; Menge & Gravem 2022; Rilov et al. 2021; Sagarin & Barry 1999). Between 2014-2016, climate anomalies El Niño (ENSO) and the Pacific Decadal Oscillation (PDO) combined to create a period …