Life Sciences Commons^™

Comparison Of Pea Seed Germination Due To Manipulation Of Soil Conditions, Ariel M. Kershner

Faculty Curated Undergraduate Works

This experiment was done with the intent to understand optimal soil conditions for pea seed germination. We investigated this using three soil conditions – 100% potting soil, 50% potting soil/50% sand, and 100% sand. Seemingly healthy pea seeds were planted and observed over five weeks. We measured both the total number of sprouts per week and the combined weight of the plants and seeds per condition before planting and after uprooting. We expected to find that the 100% potting soil condition would germinate the best, resulting in the most sprouts and heaviest weight of the condition’s seeds and plants. This …

Investigation Of The Localization And Expression Of The G-Protein Coupled Receptor Fshr-1 In C. Elegans Neurons, Kyle Cherry

Undergraduate Honors Thesis Collection

Neurons communicate at specialized junctions called synapses. Synaptic transmission occurs when presynaptically released neurotransmitters bind to receptors either continuing (excitatory) or stopping (inhibitory) the signal in the postsynaptic cell. Excitatory to inhibitory (E:I) balance is critical for proper neurological function. This balance is achieved through the function of various proteins such as the ubiquitin ligase, the anaphase promoting complex (APC). My thesis project focuses on one potential APC substrate, a G protein-coupled receptor called FSHR-1, and its role in synaptic transmission at the neuromuscular junction (NMJ) in Caenorhabditis elegans. Previous data from our lab and others showed that worms lacking …

When The Leaves Fall: Modeling Seasonal Variation Of Litter Flux In An Urban Forest, Scott W. Oswald

Honors College Theses

I propose a statistical model to describe the seasonal variation in forest litter flux rates. To examine the effectiveness of the proposed model and to estimate the model parameters, a small set of litter flux data was collected. Data collection was continuous from November 2014 to January 2016. Model parameters were estimated from the data. Using the estimated parameters, the model was applied to an existing dataset to provide some evidence of the model's potential to predict future litter flux rates. While the model did reasonably fit the data, it only had some limited success at prediction. Future research is …

3: "The Current Extinction: Defaunation & Ecosystem Disruption", Sarah O'Leary-Driscoll, Crystal Randall

Ecosystem Disruption & Climate Change

Information taken from: Dirzo, R. et al (2014). Defaunation in the Anthropocene. Science, 345(401).

Scientists estimate, conservatively, that there are 5 to 9 million different animal species on the planet. But that number is continually changing, and unfortunately, dropping, as we are likely losing 11,000- 58,000 species annually, and evidence suggests that on average, there has been a decline of about 28% in terms of numbers of individuals within a species over the last four decades. Both of these statistics are vitally important. The critical nature of the first is perhaps more obvious, as total loss of a species is …

2a: "Illinois Carbon Dioxide Emissions Activity", Sarah O'Leary-Driscoll, Crystal Randall

Ecosystem Disruption & Climate Change

Your goal for this activity is to compare the different sources of carbon dioxide emissions, stemming from the consumption of fossil fuels, in Illinois. To do this you will be working with data spanning from 1980 to 2012.

The Greenhouse Effect: Does The Concentration Of Carbon Dioxide Affect The Air Temperature In A Closed Environment?, Climate Science Investigations - Nasa

Ecosystem Disruption & Climate Change

The purpose of this lesson is to investigate the effect of carbon dioxide (CO2) concentration on air temperature in a closed environment.

Full Issue: Volume 9, Number 2

The Science Journal of the Lander College of Arts and Sciences

No abstract provided.

1. "Investigating The Impact Of Changes In Carbon Dioxide Concentration On Ecosystems", Sarah O'Leary-Driscoll, Crystal Randall

Ecosystem Disruption & Climate Change

Question: Does the concentration of carbon dioxide affect air temperature in a closed environment?

Lifelines Winter 2016, Southern Adventist University

Lifelines - Biology Department Newsletter

The Winter 2016 issue of Lifelines contains articles on research on air pollutants, an alumni feature, student mission in Peru, and a pictorial directory of the 2016 biology and allied health graduates.

An Investigation Of Juvenile Alewife (Alosa Pseudoharengus) Habitat Use And Growth Using Natural Markers, Gregory Norman Labonte Ms

All Student Scholarship

This research attempts to connect patterns in growth and migration of an anadromous species. The goal of this research was to understand habitat movements and growth of juvenile alewives (Alosa pseudoharengus) in the Penobscot Estuary and Bay through the use of otolith microchemistry, otolith growth increments, and a laboratory stable isotope turnover study. Understanding the connection between growth and movement of juvenile alewives may lead to more accurate and sophisticated conservation and restoration methods for anadromous species.

Metabolism Of Herpes Simplex Virus 1 Infected Raw 264.7 Macrophages, Mary K. Jenkins

Browse all Theses and Dissertations

Macrophages are immune cells that phagocytize pathogens and act as antigen presenting cells. Macrophages are critical in regulating the adaptive immune response and play a key role in neutralizing infection. Macrophages exhibit a variety of phenotypes which have different energy requirements. In the case of HSV-1 infection the virus has been shown to alter metabolic processes of its host. Utilizing a XF24 Extracellular Flux Analyzer the metabolic activity of M0, M1, and M2 (IL-4, IL-13, and IL-10) RAW 264.7 macrophages was quantified for both uninfected cells and in response to HSV-1 infection. The analysis showed uninfected M0 and M2 (IL-4, …

The Genomics Of Speciation Within The Globally Distributed Blue-Winged Ducks, Joel Thomas Nelson

Browse all Theses and Dissertations

The ability to disperse over long distances can result in a high propensity for colonizing new geographic regions and lead to lineage diversification via allopatric speciation. However, high vagility can also result in gene flow between otherwise allopatric populations, and in some cases, parapatric or divergence-with-gene-flow models of speciation might be more applicable to widely distributed lineages. Here, I used five nuclear introns and the mitochondrial control region to examine divergence, gene flow, and phylogenetic relationships within a cosmopolitan lineage comprising six species, the blue-winged ducks (genus Anas), which inhabit all continents except Antarctica. I found two primary sub-lineages, the …

Genetic Analysis Of Male-Specific Lethality Between Caenorhabditis Briggsae:: Caenorhabditis Nigoni F1 Hybrids, Vaishnavi Ragavapuram

Browse all Theses and Dissertations

Speciation occurs when there is a lack of reproduction due to genetic barriers. These genetic barriers to gene flow are referred as reproductive isolation mechanisms. Pre-zygotic and post-zygotic isolation are types of reproductive isolation mechanisms. In this project, post-zygotic isolation mechanisms were examined. Haldane's Rule states that in F1 hybrids, individuals of the heterogametic sex are less fit than those of the homogametic sex. Darwin's Corollary to Haldane's rule states that there is asymmetry in hybrid progeny between interspecific reciprocal crosses. Crosses done between Caenorhabditis briggsae males to Caenorhabditis nigoni females produce viable F1 hybrid females and males, yet the …

Genomic Signatures Of Population History In A Pair Of Recently Diverged Australian Teal Support Strong Selection On The Z Sex-Chromosome, Kevin Kyle Hawkins

Browse all Theses and Dissertations

Sex chromosomes are thought to be an important component of the genome associated with speciation and the buildup of reproductive isolation. Recent advances in sequencing technologies and improvements in population genetics and modeling techniques have made it possible to better assess genomic signatures of selection, genetic drift and gene flow in diverging lineages. Recent studies have shown elevated differentiation on the Z sex-chromosome between the Australian grey teal (Anas gracilis) and chestnut teal (Anas castanea). Here, we used next generation sequencing to scan ~3,400 autosomal loci and ~190 Z loci to examine genomic differentiation and signatures of selection and gene …

Axon Initial Segment Loss Is Not Observed In The Hippocampus Of A Experimental Autoimmune Encephalomyelitis Mouse Model, Praveen Mohanraju

UROP Posters

The axon initial segment (AIS) is fundamental for neuronal communication and action potential initiation, a characteristic which has been shown to be disrupted in inflammatory diseases such as Multiple Sclerosis (MS). Previous work from our lab has shown AIS breakdown in layer 5 of the cortex in a mouse model of MS known as experimental autoimmune encephalomyelitis (EAE). Moreover, it was shown that AIS breakdown was independent of demyelination but temporally correlated with microglial inflammatory reactivity. In order to determine if this pathology is specific to the cortex or affects other regions of the brain, we exploited these EAE induced …

Plant Functionality Across An Environmental Gradient, Taylor L. Price, Julie Zinnert

UROP Posters

Community assemblages provide insight into ecosystem processes, both spatially and temporally. They interact with biotic and abiotic factors that vary with habitat structure, influencing community composition. Ecological theory demonstrates that species have the potential for a wide fundamental niche, but habitat range may be restricted by factors exposed to species in their realized niche. In barrier island ecosystems, edaphic and environmental characteristics (e.g. elevation and distance to shoreline) are major drivers determining where and how plant communities establish. Physical stressors, such as salt stress and drought influence community grouping and can alter plant function within the environment. With projected increases …

The Effects Of Pet Ownership On Anxiety And Depression Among Trauma-Exposed College Students, Dung N. Nguyentran, Marlene A. Michniak, James J. Jung, Christine Q. Do

UROP Posters

Rates of anxiety and depression are prevalent in college students and can be attributed in part to stress and trauma-related events. However, studies suggest that pet ownership has the possibility of alleviating symptoms of anxiety, depression, negative emotions, and suicide. The purpose of this study was to determine the relationship between pet ownership and levels of anxiety and depression among those who have experienced a traumatic event. The sample was comprised of five hundred and forty-seven VCU students who completed an online survey from Spit for Science during their junior year. Linear regressions were performed to determine the nature and …

Resurgence Of Acropora Corals On Mid Shelf Patch Reefs, Southwater Caye Marine Reserve, Central Belize, Jillian J. Keefer

Undergraduate Honors Thesis Projects

Acropora cervicornis (staghorn) and Acropora palmata (elkhorn) are ecologically important corals that grow quickly and provide topography and refuges for fish and invertebrates. Historically, Acropora was the most abundant coral in shallow patch reef zones in the Caribbean. During the 1980s, white band disease eliminated most Acropora causing a loss in rugosity and an increase of macroalgae on many reefs. Although Acropora remains rare throughout most of the Caribbean, this study documents its partial comeback and possible limiting factors in Southwater Caye Marine Reserve (SWCMR), Central Belize. Patch reefs in the reserve averaged 19% live coral cover with A. palmata …

A Revision Of The Genus Eremoleon Banks (Neuroptera: Myrmeleontidae: Nemoleontini), Robert B. Miller, Lionel A. Stange

Insecta Mundi

Descriptions or diagnoses are given for 36 species of New World Eremoleon including 12 new species:

Eremoleon attenuatus, E. durangoensis, E. jacumba, E. jamaica, E. inca, E. monagas, E. morazani, E. pygmaeus, E.

samne, E. tanya, E. tepuyiensis and E. venezolanus. A neotype is designated for Hesperoleon atomarius Navás 1933.

The larvae of 25 species are described and keyed. Keys to the adults and larvae are given, and biological notes are

provided. Twenty-five species were reared from larvae found in cave mouths, rock overhangs, or other less common

habitats; for example, E. nigribasis were found in deep recesses of …

Selective Mutation Accumulation: A Computational Model Of The Paternal Age Effect, Eoin C. Whelan, Alexander C. Nwala, Christopher Osgood, Stephan Olariu

Biological Sciences Faculty Publications

Motivation: As the mean age of parenthood grows, the effect of parental age on genetic disease and child health becomes ever more important. A number of autosomal dominant disorders show a dramatic paternal age effect due to selfish mutations: substitutions that grant spermatogonial stem cells (SSCs) a selective advantage in the testes of the father, but have a deleterious effect in offspring. In this paper we present a computational technique to model the SSC niche in order to examine the phenomenon and draw conclusions across different genes and disorders.

Results: We used a Markov chain to model the probabilities of …

Phylogenetic Investigation Of Enteric Bovine Coronavirus In Ireland Reveals Partitioning Between European And Global Strains, Lynda Gunn, P. J. Collins, M. J. O'Connell, Helen O'Shea

Department of Biological Sciences Publications

Background

Bovine coronavirus is a primary cause of neonatal calf diarrhea worldwide, and is also associated with acute diarrhea in adult cattle during the winter season. There are no reports on molecular characterization of bovine coronavirus in Ireland, and little data exists apart from serological studies.

Findings

In this study, 11 neonatal (mean age 9 days) calf BCoV strains from the south of Ireland were collected over a one year period and characterized using molecular methods. The spike gene which encodes a protein involved in viral entry, infectivity and immune response shows the most variability amongst the isolates and was …

Territorial Defense Strategies In The Northern Cardinal (Cardinalis Cardinalis): Who Is The Bigger Threat?, Kaylee M. Gentry

Master's Theses

This thesis examines the use of defensive strategies in relation to territories year round in the northern cardinal (Cardinalis cardinalis). Responses to recorded neighbor song and stranger song playback from the middle of a focal male’s territory were measured. This allowed for an estimation of aggression in both the winter and spring seasons. Each focal male was subjected to both treatments (stranger song and neighbor song). Males were more responsive over-all to neighbor song playback, however in the winter months, persistence of response to neighbor song playback increased. It was also shown that southeastern United States cardinals show …

The Role Of Valproic Acid, A Histone Deacetylase Inhibitor, In Reducing Anxiety Levels In Rats: An Epigenetics Study, Juliet Buteme

Honors College Theses

Rats, like humans, show personality traits: they are born with different anxiety levels (i.e., high (HAn) or low anxiety (LAn) levels). In this study, we investigated (1) if treatment with valproic acid (VPA) can lower anxiety level in trait anxiety rats and (2) how VPA may interact with environment (e.g., enriched (EE), standard (SE) and isolated environments (IE)). VPA is a deacetylase inhibitor that increases Histone 3 acetylation, a known epigenetic mechanism that interacts with stress response proteins, and treats epilepsy and mood disorders. Since rats reared in IE exhibit heightened anxiety levels as compared to those in EE, we …

Serum Proteins Enhance Dispersion Stability And Influence The Cytotoxicity And Dosimetry Of Zno Nanoparticles In Suspension And Adherent Cancer Cell Models, Catherine B. Anders, Jordan J. Chess, Denise G. Wingett, Alex Punnoose

Biomedical Research Institute Publications and Presentations

Agglomeration and sedimentation of nanoparticles (NPs) within biological solutions is a major limitation in their use in many downstream applications. It has been proposed that serum proteins associate with the NP surface to form a protein corona that limits agglomeration and sedimentation. Here, we investigate the effect of fetal bovine serum (FBS) proteins on the dispersion stability, dosimetry, and NP-induced cytotoxicity of cationic zinc oxide nanoparticles (nZnO) synthesized via forced hydrolysis with a core size of 10 nm. Two different in vitro cell culture models, suspension and adherent, were evaluated by comparing a phosphate buffered saline (PBS) nZnO dispersion (nZnO/PBS) …

Discussion Questions: Genome Mining, Sarah O'Leary-Driscoll

Sequencing & Genome Mining

No abstract provided.

Project Guidelines, Sarah O'Leary-Driscoll

Research Project

No abstract provided.

Pt. 1: Research Question & Background, Sarah O'Leary-Driscoll

Research Project

No abstract provided.

Dna Timeline And Poster Project, Sarah O'Leary-Driscoll

Genomics: Past & Future

The DNA timeline goes through many of the major discoveries that have driven our understanding of genetics since Mendel. Pick two scientists and create a PowerPoint slide poster (to be printed out on regular printer sized paper) that covers the following:

Database/Resource Acronyms, Sarah O'Leary-Driscoll

Course Information

No abstract provided.

Readings On Current Biology: Bibliography, Imsa Biology Team

Nature of Science

No abstract provided.