Life Sciences Commons^™

Phylogenomic Analyses Clarify Butterfly Species Within The Genus Speyeria Despite Evidence Of A Recent Adaptive Radiation, Erin Thompson

University of the Pacific Theses and Dissertations

The North American genus Speyeria is an especially challenging radiation of butterflies due to ongoing hybridization, incomplete lineage sorting, and similar morphological characters among species. Adaptive radiations often require considerable evidence in order to resolve the evolutionary relationships of closely related individuals. Previous studies of this genus have found paraphyly among species and have been unable to disentangle these taxa due to a lack of data and/or incomplete sampling of the genus. As a result, the interspecific relationships among Speyeria remain unresolved. In an attempt to achieve phylogenetic resolution of the genus, we conducted population genomic and phylogenomic analyses of …

Transcriptome Analysis For Novel Peptide In Breeding Gland Of Hymenochirus Boettgeri, Minjin Ko

University of the Pacific Theses and Dissertations

The primary goal of the project was to find nucleotide sequences potentially encoding a pheromone from the breeding gland of Hymenochirus boettgeri. The reasons in searching for the sequence of a pheromone were to better understand the organism and to use the information for application in reproduction of other species. Due to climate change and rampant deforestation, such as in Africa’s Congo Basin, many amphibian species are being threatened. With these increasing threats, a viable option for the future may be breeding in captivity for the amphibian species. Pheromone characterization from the breeding gland of Hymenochirus boettgeri may help with …

A Trio Of Sigma Factors Control Hormogonium Development In Nostoc Punctiforme, Alfonso Gonzalez Jr.

University of the Pacific Theses and Dissertations

Cyanobacteria are prokaryotes capable of oxygenic photosynthesis, and for many species, nitrogen fixation, giving cyanobacteria an important role in global carbon and nitrogen cycles. Furthermore, multicellular filamentous cyanobacteria are developmentally complex, capable of differentiation into different cell types, including cells capable of nitrogen fixation and cells for motility, making them an ideal platform for studying development, as well as for practical use in biotechnology. Understanding how developmental programmes are activated require an understanding of the role of alternative sigma factors, which are required for transcriptional activation in bacteria. In order to investigate the gene regulatory network and to determine the …

Development Of A Biomarker Panel For Identifying Stressed Marine Mammals, Laura Pujade

University of the Pacific Theses and Dissertations

Increasing anthropogenic disturbance in marine ecosystems such as fishing, oil-drilling, and noise pollution can have detrimental effects on the reproduction and survival of apex predators such as marine mammals. Stress activates the hypothalamic-pituitary-adrenal (HPA) axis, resulting in increased circulating glucocorticoid (GCs) hormones, which alter expression of target genes encoding metabolic enzymes and other mediators of stress. Prolonged HPA axis stimulation may increase catabolism of nutrient stores and suppress immune and reproductive functions, impacting the fitness of marine mammals. GCs measurements are used to identify wild animals experiencing stress. However, these measurements may not be sensitive enough to distinguish between an …

Characterization Of The Blood-Feeding Patterns Of Culex Quinquefasciatus In San Bernadino County, California, Aelish Ann Guinn

University of the Pacific Theses and Dissertations

Culex quinquefasciatus has been identified as one of the most prominent vectors of West Nile virus (WNV) in Southern California. WNV is a zoonotic disease that is endemic in North America and is known to primarily cause flu-like symptoms in humans, and in rare cases, life-threatening conditions. The goal of this study was to identify which animal species are most frequently fed upon by these mosquitoes in this region. To examine the relationship between blood-feeding patterns and West Nile virus activity in San Bernardino County, the feeding patterns of Cx. quinquefasciatus are determined in a variety of habitat types, which …

Learning Human Anatomy Using Ara Mobile Application, Samia Loucif, Murad Al-Rajab, Reem Salem, Abdullah Hesham, Doaa Mahely, Mhd Alaa Ajlouni

All Works

© 2019 University of Bahrain. All rights reserved. Smartphones with mobile applications have become part of everyday life, as they transformed the ways people manage their tasks. Many fields and sectors are using mobile applications to facilitate their services. Education is an important field that can utilize the various features of mobile applications to assist students and educators. Students are learning several subjects and concepts in schools, including biology. With traditional teaching methods, students may face difficulties in grasping knowledge about human anatomy. This can affect the teaching effectiveness, students' learning process, their engagement in class, and their academic performance. …

Bovine Mammary Gland Biopsy Techniques, Veridiana L. Daley, Charles Dye, Sophie H. Bogers, R. Michael Akers, Francisco C. Rodriguez, John P. Cant, John Doelman, Peter Yoder, Karan Kumar, Dane Webster, Mark D. Hanigan

Animal and Food Sciences Faculty Publications

Bovine mammary gland biopsies allow researchers to collect tissue samples to study cell biology including gene expression, histological analysis, signaling pathways, and protein translation. This article describes two techniques for biopsy of the bovine mammary gland (MG). Three healthy Holstein dairy cows were the subjects. Before biopsies, cows were milked and subsequently restrained in a cattle chute. An analgesic (flunixin meglumine, 1.1 to 2.2 mg/kg of body weight) was administered via jugular intravenous [IV] injection 15-20 min prior to biopsy. For standing sedation, xylazine hydrochloride (0.01-0.05 mg/kg of body weight) was injected via the coccygeal vessels 5-10 min before the …

Using Clay Models To Measure Seasonal Predation On Eastern Red-Backed Salamanders, Emma Perry

Honors Program Theses and Projects

One of the many gaps we have in our knowledge of salamanders is that of predation. Most studies suggest that salamanders are eaten mainly by birds and snakes, but there are still several unanswered questions: What other types of animals tend to prey on salamanders? Is there any difference in predator type during different times of the year? In order to answer these questions, I studied predation on one particular species of salamander, Plethodon cinereus (eastern red-backed salamander). Models of the two primary color morphs of P. cinereus (striped and unstriped) were created using impressionable clay to determine types and …

The Impact Of Online Homework, Time On Homework, Gender, And Metacognition In Improving Student Achievement In Undergraduate Biology Courses, Donald Bishop Cook Jr

Doctoral Dissertations and Projects

This study sought to address a gap in the literature to determine whether a relationship exists between use of online homework and student achievement in undergraduate biology courses. Previous studies have examined other STEM courses, but few have considered biology. The purpose of the study was to determine whether homework grades in online homework systems can predict student achievement in introductory undergraduate biology courses. This study utilized a correlational analysis by multiple regression using archival data to determine whether final course grades in undergraduate biology courses can be predicted by grades on online homework, time spent on online homework, gender, …

Sex Determination By Morphological Measurements Of Young Rockhopper Penguins (Eudyptes Chrysocome) During The Crèche Phase, Virginia Morandini, Miguel Ferrer, Lynelle Perry, Marc Bechard

Raptor Research Center Publications and Presentations

To provide an easy and reliable work tool to identify the sex of Rockhopper Penguin (Eudyptes chrysocome) chicks, we weighed and measured 95 nestlings in the crèche phase during 24-31 January 2017 on the Falkland Islands, Argentina. Sex was subsequently determined using DNA analyses of blood from the same individuals. Significant differences were found in bill length (exposed culmen), bill depth and width, flipper length, and diagonal tarsus, but stepwise discriminant analysis showed bill length to be the best predictor for sex determination. Our model correctly classified 82.7% of males and 90.2% of females (overall correct classification 86.2%). …

Midguts, Microbes, And Mosquitoes: An Analysis Of The Microbiomes Of Aedes Aegypti And Aedes Albopictus, Flor Alicia Martinez

Theses and Dissertations

Experiment 1: Mosquito microbiomes are influenced by the environment and diets of mosquitoes. There is great variability within and among mosquito populations with few microbe inhabitants being well established among mosquitoes of similar species and environments. By understanding the potential variation in midgut microbiomes in lab and wild populations, we may assess the effect that microbiomes have on vector competency.

Experiment 2: Mosquito midgut microbes are essential for development and may influence the vector competency. Native and non-native strains of the midgut inhabitant, Cedecea, were introduced to laboratory colonies of Aedes aegypti and Aedes albopictus mosquitoes to help elucidate …

Molecular Fossils From Phytoplankton Reveal Secular Pco2 Trend Over The Phanerozoic, Caitlyn R. Witkowski, Johan W. H. Weijers, Brian S. Blais, Stefan Schouten, Jaap S. Sinninghe Damsté

Science and Technology Department Faculty Journal Articles

Past changes in the atmospheric concentration of carbon dioxide (PCO2) have had a major impact on earth system dynamics; yet, reconstructing secular trends of past PCO2 remains a prevalent challenge in paleoclimate studies. The current long-term PCO2reconstructions rely largely on the compilation of many different proxies, often with discrepancies among proxies, particularly for periods older than 100 million years (Ma). Here, we reconstructed Phanerozoic PCO2 from a single proxy: the stable carbon isotopic fractionation associated with photosynthesis (Ɛp) that increases as PCO2 increases. This concept has been widely applied to alkenones, but here, we …

Ms In Cytopathology, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Microbiomes, Biofilms And Bacterial Communities Cmb 420x, Michael Cerbo

Library Impact Statements

No abstract provided.

Communicating Science Through Data Visualization Bio 230g, Michael Cerbo

Library Impact Statements

No abstract provided.

Techniques In Medicinal Chemistry And Molecular Biology Bps 451, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Environmental Health And Saafety For Scientists Bps 357x, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Seminar In Biological Sciences Bio 266x, Michael Cerbo

Library Impact Statements

No abstract provided.

Effects Of Evolution On Laboratory Sublines Of Myxococcus Xanthus Dk1622, Mackenzie Ryan, Francesca Scribano, Kimberly Murphy

Celebration of Learning

Microbes have served as effective models for studying evolution because of their ability to be easily replicated, stored, and manipulated. Myxococcus xanthus is a soil bacterium that has served as a model organism in many laboratories. The unique social and motile behaviors exhibited by this bacterium make it ideal for phenotypic assays. A wild-type strain of M. xanthus, DK1622, has been distributed to laboratories across the United States and therefore we now have DK1622 sublines. The genomes of a number of these sublines have been sequenced and their social and motile phenotypes have been analyzed. When nine of these sublines …

Lifelines Fall 2018, Southern Adventist University

Lifelines - Biology Department Newsletter

The Fall 2018 issue of Lifelines features articles on the pre-medical academic summer camp, task force work at Madison Academy, an alumni spotlight, the new Nature and Revelation podcast, and the arrival of MCAT test prep.

Illuminating Endocrine Evolution: The Power And Potential Of Large-Scale Comparative Analyses, Maren N. Vitousek, Michele A. Johnson, Jerry F. Husak

Biology Faculty Research

Hormones are central mediators of genotype–phenotype and organism–environment interactions. Despite these important functions, the role of selection in shaping hormonal mediators of phenotype remains poorly understood. Thanks to decades of work by endocrinologists, circulating hormone levels have been measured in a diversity of organisms. Variation in other endocrine traits and mediators (e.g., receptor expression and binding globulins), and the hormonal response to standardized challenges (e.g., restraint, pharmacological challenges) are also increasingly measured in both captive and free-living populations. Large-scale comparative analyses of the multitude of available endocrine data represent a particularly promising approach to addressing the function and evolution of …

Principles Of Biology I & Ii (Ghc), Kimberly Subacz, Jacqueline Belwood, Karin Bennedsen, Lisa Branson, Tom Harnden, Sharryse Henderson, Mark Knauss

Biological Sciences Grants Collections

This Grants Collection for Principles of Biology I & II was created under a Round Eleven ALG Textbook Transformation Grant.

Affordable Learning Georgia Grants Collections are intended to provide faculty with the frameworks to quickly implement or revise the same materials as a Textbook Transformation Grants team, along with the aims and lessons learned from project teams during the implementation process.

Documents are in .pdf format, with a separate .docx (Word) version available for download. Each collection contains the following materials:

• Linked Syllabus
• Initial Proposal
• Final Report

Marine Biodiversity: A Larval Perspective Bio 425g, Michael Cerbo

Library Impact Statements

No abstract provided.

Parisitology Bio 231x, Michael Cerbo

Library Impact Statements

No abstract provided.

Pesticides And The Environment Ent 411/511, Michael Cerbo

Library Impact Statements

No abstract provided.

General Biology 1 Lab Manual (Bio1101l), Jeremy Seto

Open Educational Resources

No abstract provided.

Zero Textbook Cost Syllabus For Env 1004 (Fundamentals Of Ecology-Lab), Jennifer Zhu

Open Educational Resources

Fundamentals of Ecological Research is a hands-on course designed to teach students the basic concepts and methodologies used in the field of ecology. The significance of ecological research to current environmental issues, both local and global, will be stressed throughout the course.

By the end of this course, you should be able discuss the complex linkages among biotic and abiotic factors that impact natural communities, explain how these factors may be measured, and predict impacts of change.

Zero Textbook Cost Syllabus For Env 1003 (Fundamentals Of Ecology-Lecture), Mukesh Gautam

Open Educational Resources

Fundamentals of Ecology explores ecological characteristics and ecosystem processes through an evolutionary context. The course will demonstrate the interdisciplinary nature of the field of ecology by highlighting its significance to current environmental issues and the interconnectedness of the environment around us.

Zero Textbook Cost Syllabus For Env 1004 (Fundamentals Of Ecology-Lab), Mukesh Gautam

Open Educational Resources

Fundamentals of Ecological Research is a hands-on course designed to teach students the basic concepts and methodologies used in the field of ecology. The significance of ecological research to current environmental issues, both local and global, will be stressed throughout the course.

Zero Textbook Cost Syllabus For Env 1004 (Fundamentals Of Ecology-Lab), Rebecca Kulp

Open Educational Resources

This course introduces students to basic concepts and tools used in ecological research through hands-on activities, complementing and expanding materials from ENV 1003. Field trips to educational sites are required.