Life Sciences Commons^™

Floristic Composition, Diversity And Structure Of The Kimboza Forest In Morogoro Region, Tanzania, David S. Kacholi

Journal of Humanities and Social Sciences

Kimboza forest reserve in Morogoro region, is an important biodiversity hotspot among the Eastern Arc forests of Tanzania. High population pressure and encroachment threatens its conservation values. This is based on a study which aimed at investigating the composition, diversity, and structure of the tree community in the forest. All trees with DBH ≥ 10cm were inventoried from 0.72ha in a total of 18 plots of 20m × 20m placed randomly from the forest edge to the interior. Most important families and species were determined using familial importance value (FIV) and species importance value (IVI) indices, respectively. Diversity was analyzed …

La Diversidad De Los Análisis De Diversidad La Diversidad De Los Analisis De Diversidad [The Diversity Of Diversity Analyses], Victor D. Carmona-Galindo, Tizziana V. Carmona

Biology Faculty Works

There is a lack of consistency with respect to the use of the terms like species richness, diversity and biodiversity, which extends to the analysis of diversity indices and the merit of using diversity indices in the evaluation (comparison and contrast) of biological communities. The purpose of this article is to provide working definitions for these terms and cite examples from the primary literature that demonstrate the utility of estimating richness, evaluating proportional abundance patterns, as well as comparing indices of diversity and similarity to study patterns of biological organization at different ecological scales. Additionally, we provide a manual in …

The Crayfish Identity Crisis: A Morphological And Genetic Assessment Of Biodiversity, Matthew R. Carpenter, Dr. Keith A. Crandall

Journal of Undergraduate Research

Among the most endangered animal groups of North America is the freshwater crayfish. Their survival has been hindered by rapid growth in the human population, water pollution, and habitat degradation. The American Fisheries Society has estimated that 50% of freshwater crayfishes are in need of conservation measures (Taylor et al. 1996). However, only 1% is currently protected under the Endangered Species Act of 1973. Because crayfish are at the center of invaluable research as top predators, nutrient recyclers, and bio-indicators of our water quality, it is important that conservation measures are taken.

A Multi-Scale Analysis Of The Effects Of Local- And Landscape-Level Variables On Nuthatch Occupancy And Distribution, Jesse Wood

Earth and Environmental Sciences Presentations

The objectives of this study are to conduct a multi-scale analysis of the effects of habitat variables on Brownheaded Nuthatch (S. pusilla) occupancy and spatial distribution in the greater Greenville area of South Carolina. By understanding the local- and landscape-drivers of an ecologically sensitive species, we can build a predictive model of species occurrence and contribute to regional conservation efforts of both habitat and biodiversity.

The Effects Of Invasive Plants On Biodiversity Across Spatial Scales, Kristin Irene Powell

All Theses and Dissertations (ETDs)

Although introduced plant species are often considered to be one of the most notable anthropogenic threats to biodiversity, their influence on biodiversity remains controversial. Some studies have shown large declines in biodiversity in plant-invaded areas, whereas others have noted that plant invasions are rarely implicated as the cause of species extinctions. This dissertation aims to synthesize this seemingly conflicting literature on the effects of invasive plants on biodiversity. The overarching hypothesis in this research is that the effect of invasive plant species on biodiversity is scale-dependent, and the discrepancy among studies can be explained by a difference in the scales …

Four Decades Of Andean Timberline Migration And Implications For Biodiversity Loss With Climate Change, David A. Lutz, Rebecca L. Powell, Miles R. Silman

Dartmouth Scholarship

Rapid 21st-century climate change may lead to large population decreases and extinction in tropical montane cloud forest species in the Andes. While prior research has focused on species migrations per se, ecotones may respond to different environmental factors than species. Even if species can migrate in response to climate change, if ecotones do not they can function as hard barriers to species migrations, making ecotone migrations central to understanding species persistence under scenarios of climate change. We examined a 42-year span of aerial photographs and high resolution satellite imagery to calculate migration rates of timberline–the grassland-forest ecotone–inside and outside of …

Redbuds Similar Around The World, W. John Hayden

Biology Faculty Publications

Like music, one of the hallmarks of biodiversity is theme and variation. Redbuds—species of the genus Cercis— from around the world illustrate this analogy well. Because all redbud species conform to a certain morphological theme, anyone familiar with one particular species of redbud should be able to recognize without hesitation any other redbud species as a member of the genus Cercis. In brief, the redbud theme consists of broad, basally-lobed, leaves with pulvinar petiole thickenings, and pea-like red-purple (rarely white) flowers that may arise on small twigs or main trunks. In fact, these plants are so distinctive, it would …

A Comprehensive And Integrative Reconstruction Of Evolutionary History For Anomura (Crustacea: Decapoda)., Heather D Bracken-Grissom, Maren E Cannon, Patricia Cabezas, Rodney M Feldmann, Carrie E Schweitzer, Shane T Ahyong, Darryl L Felder, Rafael Lemaitre, Keith A Crandall

Computational Biology Institute

BACKGROUND: The infraorder Anomura has long captivated the attention of evolutionary biologists due to its impressive morphological diversity and ecological adaptations. To date, 2500 extant species have been described but phylogenetic relationships at high taxonomic levels remain unresolved. Here, we reconstruct the evolutionary history-phylogeny, divergence times, character evolution and diversification-of this speciose clade. For this purpose, we sequenced two mitochondrial (16S and 12S) and three nuclear (H3, 18S and 28S) markers for 19 of the 20 extant families, using traditional Sanger and next-generation 454 sequencing methods. Molecular data were combined with 156 morphological characters in order to estimate the largest …

Does Presence Of A Mid-Ocean Ridge Enhance Biomass And Biodiversity?, Imants G. Priede, Odd Aksel Bergstad, Peter I. Miller, M. Vecchione, Andrey Gebruk, Tone Falkenhaug, David S. M. Billett, Jessica Craig, Andrew C. Dale, Mark A. Shields, Gavin H. Tilstone, Tracey Sutton, Andrew J. Gooday, Mark E. Inall, Daniel O. B. Jones, Victor Martinez-Vicente, Gui Menezes, Tomasz Niedzielski, Thorsteinn Sigurdsson, Nina Rothe, Antonina Rogacheva, Claudia H. S. Alt, Timothy Brand, Richard Abell, Andrew S. Brierley, Nicola J. Cousins, Deborah Crockard, A. Rus Hoelzel, Age Hoines, Tom B. Letessier, Jane F. Read, Tracy Shimmield, Martin J. Cox, John K. Galbraith, John D. M. Gordon, Tammy Horton, Francis Neat, Pascal Lorance

Marine & Environmental Sciences Faculty Articles

In contrast to generally sparse biological communities in open-ocean settings, seamounts and ridges are perceived as areas of elevated productivity and biodiversity capable of supporting commercial fisheries. We investigated the origin of this apparent biological enhancement over a segment of the North Mid-Atlantic Ridge (MAR) using sonar, corers, trawls, traps, and a remotely operated vehicle to survey habitat, biomass, and biodiversity. Satellite remote sensing provided information on flow patterns, thermal fronts, and primary production, while sediment traps measured export flux during 2007–2010. The MAR, 3,704,404 km² in area, accounts for 44.7% lower bathyal habitat (800–3500 m depth) in the …

Brown Algal Diversity In Bermuda Revealed Using Molecular Tools, Alyssa L. Rogers

Senior Honors Projects

For nearly 60 years there has been very little investigation of the marine algal flora in Bermuda, which is an ideal location for a biodiversity assessment due to its size and location. Residing approximately 1000km off the coast of North Carolina, Bermuda is influenced by the cool water from the north during winter and by the warm water eddies that spin off the Gulf Stream for the much of the other seasons. The Bermuda Seaweed Project aims to extensively survey the marine algal flora in Bermuda and generate morphological and molecular data for all three major groups of macroalgae present. …

Integrating, Developing, And Testing Methods To Generate More Cohesive Approaches To Biogeographic Inference, Mallory Elizabeth Eckstut

UNLV Theses, Dissertations, Professional Papers, and Capstones

As a fundamental component of the developing discipline of conservation biogeography, broadscale analyses of biotic assembly and disassembly across multiple temporal and spatial scales provide an enhanced understanding of how geologic transformations and climate oscillations have shaped extant patterns of biodiversity. As with any scientific field, there are limitations in the case of biogeographic historical reconstructions. Historical reconstructions are only as robust as the theoretical underpinnings of the methods of reconstruction (including data collection, quality, analysis, and interpretation). Nevertheless, historical reconstructions of species distributions can help inform our understanding of how species respond to environmental change.

My dissertation takes a …

Investigations Of Phytoplankton Diversity In Chesapeake Bay, Todd Arthur Egerton

Biological Sciences Theses & Dissertations

Characterizing the diversity of a community in relation to environmental conditions and ecosystem functions are core concepts in ecology. While decades of research have led to a growing comprehension of diversity in many ecosystems, our understanding in aquatic habitats and microbial organisms remains relatively limited. Phytoplankton represent a diverse and important group that contribute approximately half of global primary productivity and are intrinsically connected to changing environmental conditions, especially in systems as dynamic as estuaries. To better understand the ecological processes governing phytoplankton composition and diversity, spatial and temporal patterns of environmental parameters and their relation to the algal community …

Opposing Mechanisms Drive Richness Patterns Of Core And Transient Bird Species, Jessica R. Coyle, Allen H. Hurlbert, Ethan P. White

Biology Faculty Publications

Studies of biodiversity typically assume that all species are equivalent. However, some species in a community maintain viable populations in the study area, while others occur only occasionally as transient individuals. Here we show that North American bird communities can reliably be divided into core and transient species groups and that the richness of each group is driven by different processes. The richness of core species is influenced primarily by local environmental conditions, while the richness of transient species is influenced primarily by the heterogeneity of the surrounding landscape. This demonstrates that the well-known effects of the local environment and …

Estimated Losses Of Plant Biodiversity Across The U.S. From Historical N Deposition From 1985—2010., Christopher M. Clark, Philip E. Morefield, Frank S. Gilliam, Linda H. Pardo

Biological Sciences Faculty Research

Although nitrogen (N) deposition is a significant threat to herbaceous plant biodiversity worldwide, it is not a new stressor for many developed regions. Only recently has it become possible to estimate historical impacts nationally for the United States. We used 26 years (1985–2010) of deposition data, with ecosystem-specific functional responses from local field experiments and a national critical loads (CL) database, to generate scenario-based estimates of herbaceous species loss. Here we show that, in scenarios using the low end of the CL range, N deposition exceeded critical loads over 0.38, 6.5, 13.1, 88.6, and 222.1 million ha for the Mediterranean …

Diversity Of Stem Borer Parasitoids And Their Associated Wild Host Plants In South Africa And Mozambique, H. J. Moolman, J. Van Den Berg, D. Conlong, D. Cugala, S. J. Siebert, B. P. Le Ru

All Peer-Reviewed Publications

The diversity of lepidopterous stem borers, their parasitoids and their associated wild host plants was studied in South Africa between 2006 and 2009 and in Mozambique between 2005 and 2010. In South Africa, 20 species of parasitoids were recovered from 17 stem borer species collected on 16 wild host plant species. From Mozambique, 14 parasitoid species were recorded from 16 stem borer species collected on 14 wild host plant species. The highest diversity of parasitoids was recorded on stem borers that attacked the host plants Phragmites australis (7 spp.) and Panicum maximum (6 spp.), in South Africa and Mozambique, respectively. …

Three Pyronemataceous Macrofungi Genera New To Turkish Mycota, Ilgaz Akata, Abdullah Kaya

Turkish Journal of Botany

Three pyronemataceous macrofungi genera, Acervus Kanouse, Neottiella (Cooke) Sacc., and Rhodoscypha Dissing & Sivertsen, are recorded for the first time from Turkey, based on the collection of Acervus epispartius (Berk. & Broome) Pfister, Neottiella rutilans (Fr.) Dennis, and Rhodoscypha ovilla (Peck) Dissing & Sivertsen. Short descriptions of the taxa are provided together with photographs related to macro- and micromorphologies.

Soil-Plant Relations In The Annual Gypsophila (Caryopyhllaceae) Taxa Of Turkey, Mustafa Korkmaz, Hasan Özçeli̇k

Turkish Journal of Botany

The soil properties of the annual Gypsophila L. taxa of Turkey and their effects on plant morphology were investigated. The taxa studied were Gypsophila heteropoda Freyn & Sint., G. parva Barkoudah, G. elegans M.Bieb., G. bitlisensis Barkoudah, G. viscosa Murray, G. antari Post & Beauverd, G. muralis L., G. tubulosa (Jaub. & Spach) Boiss., G. confertifolia Hub.-Mor., and G. pilosa Hudson. The soils of the plant taxa were medium textured, sand or sandy-loam, saltless or a little salty, neutral, limy, rich in potassium and with very little phosphorous, and with medium levels of nitrogen and organic matter. G. antari, which …

The Lichen Flora Of Gunib Plateau, Inner-Mountain Dagestan (North-East Caucasus, Russia), Gennadii Urbanavichus, Aziz Ismailov

Turkish Journal of Botany

As a result of lichenological exploration of the Gunib plateau in the Republic of Dagestan (North-East Caucasus, Russia), we report 402 species of lichenised, 37 lichenicolous, and 7 nonlichenised fungi representing 151 genera. Nineteen species are recorded for the first time for Russia: Abrothallus chrysanthus J.Steiner, Abrothallus microspermus Tul., Caloplaca albopruinosa (Arnold) H.Olivier, Candelariella plumbea Poelt & Vezda, Candelariella rhodax Poelt & Vezda, Cladonia firma (Nyl.) Nyl., Halospora deminuta (Arnold) Tomas. & Cif., Halospora discrepans (J.Lahm ex Arnold) Hafellner, Lichenostigma epipolina Nav.-Ros., Calat. & Hafellner, Milospium graphideorum (Nyl.) D.Hawksw., Mycomicrothelia atlantica D.Hawksw. & Coppins, Parabagliettoa cyanea (A.Massal.) Gueidan & Cl.Roux, …

Contributions To Lichen Diversity Of Turkey From The Sarısu Area (Kocaeli), Gülşah Çobanoğlu, Bi̇rkan Açikgöz, Laurentiu Baloniu

Turkish Journal of Botany

A total of 85 lichen taxa from the Sarısu area of the district of Kandıra in Kocaeli Province were listed. Three new records for the biota of Turkey, Coenogonium pineti (Ach.) Lücking & Lumbsch, Lecania cuprea (A.Massal.) Van den Boom & Coppins, and Opegrapha calcarea Turner ex Sm., have been identified within the context of this study along with 81 new taxa for the province of Kocaeli.

Habitat Availability And Heterogeneity And The Indo-Pacific Warm Pool As Predictors Of Marine Species Richness In The Tropical Indo-Pacific, Jonnell C. Sanciangco, Kent E. Carpenter, Peter J. Etnoyer, Fabio Moretzsohn

Biological Sciences Faculty Publications

Range overlap patterns were observed in a dataset of 10,446 expert-derived marine species distribution maps, including 8,295 coastal fishes, 1,212 invertebrates (crustaceans and molluscs), 820 reef-building corals, 50 seagrasses, and 69 mangroves. Distributions of tropical Indo-Pacific shore fishes revealed a concentration of species richness in the northern apex and central region of the Coral Triangle epicenter of marine biodiversity. This pattern was supported by distributions of invertebrates and habitat-forming primary producers. Habitat availability, heterogeneity, and sea surface temperatures were highly correlated with species richness across spatial grains ranging from 23,000 to 5,100,000 km(2) with and without correction for autocorrelation. The …

Evaluating The Effects Of Common-Pool Resource Institutions And Market Forces On Species Richness And Forest Cover In Ecuadorian Indigenous Kichwa Communities, Johan A. Oldekop, Anthony J. Bebbington, Karl Hennermann, Julia Mcmorrow, David A. Springate, Bolier Torres, Nathan K. Truelove, Niklas Tysklind, Santiago Villamarín, Richard F. Preziosi

Geography

We compare conservation outcomes between a protected area (PA) and four indigenous common-property regimes (CPRs) under differing degrees of market integration in the Ecuadorian Amazon. We first assess how market forces and common-pool resource institutions governing processes of forest conversion affect biodiversity and forest cover, and whether institutions mitigate the effect of market forces. We then analyze how biodiversity and forest cover differ between a PA, and communities with different market access. Finally, we link biodiversity and forest cover changes within communities to differences in land-use practices. While we show similar levels of forest cover and biodiversity between the PA …

Conus: First Comprehensive Conservation Red List Assessment Of A Marine Gastropod Mollusc Genus, Howard Peters, Bethan C. O'Leary, Julie P. Hawkins, Kent E. Carpenter, Callum M. Roberts

Biological Sciences Faculty Publications

Marine molluscs represent an estimated 23% of all extant marine taxa, but research into their conservation status has so far failed to reflect this importance, with minimal inclusion on the authoritative Red List of the International Union for the Conservation of Nature (IUCN). We assessed the status of all 632 valid species of the tropical marine gastropod mollusc, Conus (cone snails), using Red List standards and procedures to lay the groundwork for future decadal monitoring, one of the first fully comprehensive global assessments of a marine taxon. Three-quarters (75.6%) of species were not currently considered at risk of extinction owing …

Applying The Principles Of Spatial Modelling To The Management Of Biodiversity In The Fragmented Landscapes Of South-Western Australia, Shaun Molloy

Theses: Doctorates and Masters

Biodiversity conservation throughout the world is challenged by the impacts of a changing climate on fragmented landscapes. To mitigate these threats, conservation managers require models which can demonstrate the consequences of both negative impacts and management actions. This need can be addressed through spatial modelling applications. Unfortunately, throughout much of the world, spatial modelling is forgone, being seen as requiring skills and resources beyond the means of many conservation planners and managers. This thesis seeks to address this dilemma by delivering criteria for a successful modelling application and by providing case studies which demonstrate how appropriate modelling can be undertaken …

The Influence Of Vertical And Horizontal Habitat Structure On Nationwide Patterns Of Avian Biodiversity, Patrick D. Culbert, Volker C. Radeloff, Curtis H. Flather, Josef M. Kellndorfer, Chadwick D. Rittenhouse, Anna M. Pidgeon

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

With limited resources for habitat conservation, the accurate identification of high-value avian habitat is crucial. Habitat structure affects avian biodiversity but is difficult to quantify over broad extents. Our goal was to identify which measures of vertical and horizontal habitat structure are most strongly related to patterns of avian biodiversity across the conterminous United States and to determine whether new measures of vertical structure are complementary to existing, primarily horizontal, measures. For 2,546 North American Breeding Bird Survey routes across the conterminous United States, we calculated canopy height and biomass from the National Biomass and Carbon Dataset (NBCD) as measures …

Arthropod Abundance And Diversity In Street Trees Of South Texas, Usa, Alexis Racelis, Ann T. Vacek, Carol Goolsby, John Brush, John A. Goolsby

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

In urban areas, street trees provide a variety of ecological services, including biodiversity conservation. In this study we examined arthropod diversity on native and non-native street trees sampled during the fall of 2010 and spring of 2011 in McAllen, Texas, one of the most rapidly growing urban areas in the country. Eighty-eight street trees were sampled by removing arthropods from the lower canopy foliage using a hand held vacuum. Arthropods were collected into nylon bags, identified to order, and counted by morphospecies. Overall, street trees supported a significant and diverse population of arthropods: a total of 1,971 arthropods were collected, …

The Nagoya Protocol And Synthetic Biology Research: A Look At The Potential Impacts, Margo A. Bagley, Arti K. Rai

Faculty Scholarship

This report, prepared for the Synthetic Biology Project at the Woodrow Wilson International Center for Scholars, analyzes the 2010 Nagoya Protocol to the Convention on Biological Diversity and how it may affect U.S. researchers working in the field of synthetic biology. The objective of the Protocol is to provide a transparent framework for the acquisition and sharing of genetic resources on fair and equitable terms that facilitate the conservation of biological diversity and associated traditional knowledge. The report finds significant uncertainty surrounding the temporal scope of the Agreement as well as the types of genetic material that will be covered …

Forest Regeneration On The Osa Peninsula, Costa Rica, Manette E. Sandor

Master's Theses

Woody species diversity of secondary forest has the potential to converge with that found in old growth forest. This study is the first to examine multiple aspects of species and reproductive trait diversity, and their relationship to each other, across a successional chronosequence. Species richness and species diversity increases with increasing age of forest. Diaspore size and diversity as well as fruit size generally increased with increasing age of forest, but fruit size diversity did not. Abundance of animal-dispersed species increased whereas wind-dispersed species decreased in abundance over succession. Insect-pollinated individuals were most abundant overall. Diaspore diversity, pollination diversity, and …

Marine Fungi Of U.S. Gulf Of Mexico Barrier Island Beaches: Biodiversity And Sampling Strategy, Allison Kathleen Walker

Dissertations

Marine fungi are an important but often overlooked component of marine ecosystems. Primarily saprotrophic, they are vital to coastal nutrient cycling processes and food webs. However, basic marine fungal distribution data are lacking in many parts of the world, as is knowledge of the sampling intensity required to characterize the biodiversity of these communities. The roles of substrate, season and latitude in shaping intertidal ascomycete community structure were examined for the U.S. Gulf of Mexico, and the role of sampling frequency on species richness estimates was also addressed. Best sampling practices were developed and 750 collections of beach detritus, sand …

Discovery Of Novel Dsrna Viral Sequences By In Silico Cloning And Implications For Viral Diversity, Host Range And Evolution, Huiquan Liu, Yanping Fu, Jiatao Xie, Jiasen Cheng, Said A. Ghabrial, Guoqing Li, Xianhong Yi, Daohong Jiang

Plant Pathology Faculty Publications

Genome sequence of viruses can contribute greatly to the study of viral evolution, diversity and the interaction between viruses and hosts. Traditional molecular cloning methods for obtaining RNA viral genomes are time-consuming and often difficult because many viruses occur in extremely low titers. DsRNA viruses in the families, Partitiviridae, Totiviridae, Endornaviridae, Chrysoviridae, and other related unclassified dsRNA viruses are generally associated with symptomless or persistent infections of their hosts. These characteristics indicate that samples or materials derived from eukaryotic organisms used to construct cDNA libraries and EST sequencing might carry these viruses, which were not easily detected by the researchers. …

Transcendental Thermodynamics, Richard E. Morel, George Fleck

Kahn Institute Projects

Thermodynamics is often viewed as a narrow, introspective discipline, trapped by its origins in the 18th and 19th centuries. By dramatic contrast, we show that the Fourth Law of Thermodynamics provides explanations and interpretations of all natural events, extending across artificial boundaries of tradition- al academic disciplines. The Fourth Law of Thermodynamics states that far-from-equilibrium systems increase entropy at the maximum rate available to them. This broadly inclusive paradigm applies to systems from molecules, to organisms, to the biosphere. The Fourth Law is the Law of Evolution. All systems that communicate with their environment exhibit self-organization and self-optimization, enabling the …