Life Sciences Commons^™

Relative Contribution Of Neutral And Deterministic Processes In Shaping Fruit-Feeding Butterfly Assemblages In Afrotropical Forests, Kwaku Aduse-Poku, Freerk Molleman, William Oduro, Samuel K. Oppong, David J. Lohman, Rampal S. Etienne

Publications and Research

The unified neutral theory of biodiversity and biogeography has gained the status of a quantitative null model for explaining patterns in ecological (meta)communities. The theory assumes that individuals of trophically similar species are functionally equivalent. We empirically evaluate the relative contribution of neutral and deterministic processes in shaping fruit-feeding butterfly assemblages in three tropical forests in Africa, using both direct (confronting the neutral model with species abundance data) and indirect approaches (testing the predictions of neutral theory using data other than species abundance distributions). Abundance data were obtained by sampling butterflies using banana baited traps set at the forest canopy …

Estimating Wildlife Biodiversity Of Pine Plantation Edges Of Contrasting Rotational Stages: A Case Study, Joshua Perry Harris

Electronic Theses and Dissertations

ESTIMATING WILDLIFE BIODIVERSITY OF PINE PLANTATION EDGES OF CONTRASTING ROTATIONAL STAGES: A CASE STUDY

By: Joshua Harris, Dr. Daniel Scognamillo, Dr. Gary Kronrad, and Dr. Jeremy Stovall

Abstract

Wildlife biodiversity was estimated amongst three loblolly pine (Pinus taeda) intra-plantation edge types of contrasting rotational phases in a two-year case study. Three structurally varied rotational phases that occur throughout plantation rotations combine to make three different edges: A= pre-thinned - post-thinned, B= pre-thinned - pre-clearcut, and C= post-thinned - pre-clearcut. For two summer seasons (May-August 2015-2016), invertebrates, birds, medium mammals, and small mammals were sampled in each edge type. …

Reef Fish Biodiversity In The Florida Keys National Marine Sanctuary, Megan E. Hepner

USF Tampa Graduate Theses and Dissertations

The biological diversity of reef-fish in the Florida Keys National Marine Sanctuary (FKNMS) from 1999 – 2016 was evaluated in terms of abundance, biomass, species richness, evenness, Shannon diversity, Simpson diversity, and functional diversity, using observations collected by multiple agencies and institutions under the Reef Visual Census (RVC) program. To compare the different diversity indices species richness, Shannon diversity, Simpson diversity, and functional diversity were converted into effective number of species. I examined the seven indices by no-take marine zones, in seven benthic habitat strata, and across the three-distinct geographic subregions in the Florida Keys domain (Upper, Middle, and Lower …

The Parasite Extinction Assessment & Red List: An Open-Source, Online Biodiversity Database For Neglected Symbionts, Colin J. Carlson, Oliver C. Muellerklein, Anna J. Phillips, Kevin R. Burgio, Giovanni Castaldo, Carrie A. Cizauskas, Graeme S. Cumming, Tad Dallas, Jorge Doña, Nyeema Harris, Roger Jovani, Zhongqi Miao, Heather Proctor, Hyun Seok Yoon, Wayne M. Getz

Faculty Publications

Parasite conservation is a rapidly growing field at the intersection of ecology, epidemiology, parasitology, and public health. The overwhelming diversity of parasitic life on earth, and recent work showing that parasites and other symbionts face severe extinction risk, necessitates infrastructure for parasite conservation assessments. Here, we describe the release of the Parasite Extinction Assessment & Red List (PEARL) version 1.0, an open-access database of conservation assessments and distributional data for almost 500 macroparasitic invertebrates. The current approach to vulnerability assessment is based on range shifts and loss from climate change, and will be expanded as additional data (e.g., host-parasite associations …

Assessing The Vegetative Diversity Of An East Texas Golf Course Using Principles Of Landscape Ecology, Brian P. Oswald, Penny G. Lanham, Hans M. Williams, David Kulhavy

Faculty Publications

The objectives of this study was to determine the vegetative diversity and the effects of the edge between fairways (introduced patches) and out-of-bounds areas (remnant patches) to determine if such management activities influence plant diversity. This study was conducted at the Pineywoods Country Club in the Pineywoods Region of East Texas near Nacogdoches, TX, USA by assessing the spatial distribution of these matrices and patches and their influence on edge effect composition and structure in the matrix; and, if species diversity and composition differed between these edges and interior of the matrices. Nested plots were placed along transects and canopy …

Rethinking Urban Green Infrastructure As A Means To Promote Avian Conservation, Allen Lau

Master's Projects and Capstones

There is an under-recognized potential for cities to use urban green infrastructure to contribute to avian biodiversity conservation. At the global scale, climate change and growing urbanization are primary global drivers leading to decline and homogenization in world bird populations. Birds are fundamental and intricate species in ecosystems, and even in urban areas, act as indicator and regulator species contributing to healthy ecosystem function. While many cities have recognized the economic and social benefits associated with green spaces, such as the vast benefits ecosystem services provide to the urban dweller, the use of green spaces to concurrently contribute to avian …

Phytoplasma Infection Of A Tropical Root Crop Triggers Bottom-Up Cascades By Favoring Generalist Over Specialist Herbivores, Kris A. G. Wyckhuys, Ignazio Graziosi, Dharani Dhar Burra, Abigail Jan Walter

Entomology Faculty Publications

Global interest on plant-microbe-insect interactions is rapidly growing, revealing the multiple ways in which microorganisms mediate plant-herbivore interactions. Phytopathogens regularly alter whole repertoires of plant phenotypic traits, and bring about shifts in key chemical or morphological characteristics of plant hosts. Pathogens can also cause cascading effects on higher trophic levels, and eventually shape entire plant-associated arthropod communities. We tested the hypothesis that a Candidatus Phytoplasma causing cassava witches’ broom (CWB) on cassava (Manihot esculenta Grantz) is altering species composition of invasive herbivores and their associated parasitic hymenopterans. We conducted observational studies in cassava fields in eastern Cambodia to assess …

Phylogenetically Clumped Species Composition Of Marine Green Algae (Chlorophyta) In The Temperate Zone, Hungyen Chen, Satoshi Nagai

Journal of Marine Science and Technology–Taiwan

Global patterns of diversity in marine algae have been reported at the genus level but rarely at the species level. In this study, we investigate the global distribution of species diversity for marine green algae and evaluate the effect of water temperature upon the species composition. We calculated and mapped the species richness and phylogenetic diversity of green algae in 5° x 5° latitude-longitude cells. We then compared and grouped the different spatial patterns of phylogenetic species composition of green algae around the world. Finally, we fitted a locally weighted scatterplot smoothing (LOWESS) curve to the sea surface temperature (SST) …

A Global Biogeographic Classification Of The Mesopelagic Zone, Tracey Sutton, Malcolm R. Clark, Daniel C. Dunn, Patrick N. Halpin, Alex D. Rogers, John Guinotte, Steven J. Bograd, Martin V. Angel, Jose Angel A. Perez, Karen Wishner, Richard L. Haedrich, Dhugal Lindsay, Jeffrey C. Drazen, Alexander Vereshchaka, Uwe Piatkowski, Telmo Morato, Katarzyna Blachowiak-Samolyk, Bruce H. Robison, Kristina Gjerde, Annelies Pierrot-Bults, Patricio Bernal, Gabriel Reygondeau, Mikko Heino

Marine & Environmental Sciences Faculty Articles

We have developed a global biogeographic classification of the mesopelagic zone to reflect the regional scales over which the ocean interior varies in terms of biodiversity and function. An integrated approach was necessary, as global gaps in information and variable sampling methods preclude strictly statistical approaches. A panel combining expertise in oceanography, geospatial mapping, and deep-sea biology convened to collate expert opinion on the distributional patterns of pelagic fauna relative to environmental proxies (temperature, salinity, and dissolved oxygen at mesopelagic depths). An iterative Delphi Method integrating additional biological and physical data was used to classify biogeographic ecoregions and to identify …

Reconciling The Challenge Of Aphanic Species Within Marine Conservation, Kerri L. Bolow

HCNSO Student Capstones

Aphanic species are those within a taxonomic complex that may not be readily distinguishable from other sympatric species. The existence of these species is becoming apparent at an increasing rate through the use of technological tools like molecular genetic analyses. A lack of clarity on the definitions of terms used to describe similar species, how these species are identified, and how prevalent they are can confound identification, description, and management of these organisms. This review collects and defines the terms used to describe these hidden species and suggests the use of the term aphanic for situations where additional information (and …

Negative Density Dependence Mediates Biodiversity–Productivity Relationships Across Scales, Joseph A. Lamanna, R Travis Belote, Laura A. Burkle, Christopher P. Catano, Jonathan A. Myers

Biology Faculty Research

Regional species diversity generally increases with primary productivity whereas local diversity–productivity relationships are highly variable. This scale-dependence of the biodiversity–productivity relationship highlights the importance of understanding the mechanisms that govern variation in species composition among local communities, which is known as β-diversity. Hypotheses to explain changes in β-diversity with productivity invoke multiple mechanisms operating at local and regional scales, but the relative importance of these mechanisms is unknown. Here we show that changes in the strength of local density-dependent interactions within and among tree species explain changes in β-diversity across a subcontinental-productivity gradient. Stronger conspecific relative to …

Lichen Conservation In Eastern North America: Population Genomics, Climate Change, And Translocations, Jessica Allen

Dissertations, Theses, and Capstone Projects

Conservation biology is a scientific discipline that draws on methods from diverse fields to address specific conservation concerns and inform conservation actions. This field is overwhelmingly focused on charismatic animals and vascular plants, often ignoring other diverse and ecologically important groups. This trend is slowly changing in some ways; for example, increasing number of fungal species are being added to the IUCN Red-List. However, a strong taxonomic bias still exists. Here I contribute four research chapters to further the conservation of lichens, one group of frequently overlooked organisms. I address specific conservation concerns in eastern North America using modern methods. …

Using Maximum Entropy Species Distribution Modeling For Long-Term Conservation Planning Of Three Federally Listed Bats In North America, Mitchell L. Meyer

Master's Theses or Doctor of Nursing Practice

We are currently in a sixth mass extinction event in which the extinction rate is higher than it has ever been. This mass extinction event is caused by human influence on the environment. Biodiversity is worth conserving because of its many uses to humans. Bats are a diverse group of mammals that humans rely on for pest control services. The gray bat, northern long-eared bat, and Indiana bat are on the Threatened and Endangered Species List and are in need of conservation. I built species distribution models using occurrence records, climate data, and Maximum entropy (MaxEnt) modeling technique. I predicted …

Law Library Blog (May 2017): Legal Beagle's Blog Archive, Roger Williams University School Of Law

Law Library Newsletters/Blog

No abstract provided.

Vegetation Community Changes In Two National Forests In The Pineywoods, East Texas, Trisha L. Williams

Electronic Theses and Dissertations

Despite extensive research into forest succession, little research has been directed to long-term studies. The fundamental properties of succession remain unclear and further research into terrestrial vegetation and an accounting of drivers in specific ecosystem types is required. This study addresses change in plant communities from five ecosystem types in two east Texas National Forests over a 20-year period. An analysis of 30 sample stands yields results due to various ecosystem drivers of vegetation change and uncovers plant community responses in multiple ecosystem types over this period. This research provided three key results: 1) that vegetation composition change occurs more …

An Attempt To Update A Checklist And Some Other Aspects Of Murree Hills’ Avifauna, Abulhasan Faiz, Fakhar -I- Abbas, Adila Nazli, Fakhra Nazir

Journal of Bioresource Management

Birds are vital component of biodiversity as they are playing a significant role in an ecosystem. Increasing human interference might have affected previously reported diversity of birds. This study was designed to collect information about birds check list data of Murree hills. Area was surveyed at different times of day and different months of season. During visits, pictures of birds were taken and identification as well as preparation of list was carried out. Comparison of new checklist with previous literature was done in order to get revised checklist of existing species.

A Check List Of The Avifauna Of Loi-Bher Wildlife Park Islamabad, Madeeha Manzoor, Sabiha Shamim, Fida Muhammad Khan

Journal of Bioresource Management

Despite its relatively small area, Loi-Bher wild life park is quite diverse with respect to the avifauna. The common bird species found in the area are: bulbuls, pies, pigeons, parakeets, mynas, babblers, warblers, rollers, bee-eaters, doves, crows and pheasants. Over 40 species of Broad-leaved trees, shrubs and woody climbers have been identified in this zone e.g. Acacia modesta, Morus alba, Bauhinia variegata, Punica granatum, Aristida cynnantha, Acacia nilotica, Dalbergia sisso, etc. Human settlements in designated natural areas of the Loi-Bher wild life park constitute the most serious threat to the park resources.

Presence/Absence And Density Data For Epipelagic Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2015a And Lf2015b June 2015 And July 2015, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Larval catch data after the oil spill is being used to improve our understanding of the causes of temporal variability as it relates to the Deep Water Horizon oil spill (DWHOS). Bongo and neuston net tows were conducted at 48 stations in both June and July, 2015 in the northern Gulf of Mexico. Cruise data collected at each site included latitude/longitude, date, time and environmental data (temperature, salinity, dissolved oxygen). The occurrence and density of selected epipelagic (e.g., billfishes, tunas, dolphinfishes, flyingfishes) and deep pelagic (e.g., lanternfishes, bristlemouths, marine hatchetfishes) fish larvae were quantified and are being used to extend …

Vegetative Comunitiy Development Over 30 Years Within Pine Plantations On Reclaimed Mine Land In East Texas., Christy Christian, Brian P. Oswald, Hans M. Williams, Kenneth W. Farrish

Faculty Publications

No abstract provided.

Preliminary Study Of Pan Trapping In Longleaf Pine Flatwoods In Central Florida, Usa, A. B. Orfinger, T. B. Cogen, G. R. Irons, K. V. Kabilan, B. Molligoda, A. L. Moody, J. F. Wisdo, K. F. Phillips

Midsouth Entomologist

It is well documented that pan trap color greatly influences arthropod catch composition. Additionally, it has been demonstrated that pan trapping catch varies with habitat. The goal of this study is to present preliminary data on pan trap yield from an imperiled ecosystem marked by high rates of endemicity, longleaf pine flatwoods. Yellow, blue, and white pan traps were evaluated in a section of longleaf pine flatwoods in June 2017 in central Florida, USA. A total of 360 arthropod specimens representing nine taxonomic orders were recovered, with 117 individuals from yellow traps, 125 from blue, and 118 from white. Contrary …

Niche By Basma Kavanagh, Vivian M. Hansen

The Goose

Review of Basma Kavanagh's Niche.

Do The Shuffle: Changes In Symbiodinium Consortia Throughout Juvenile Coral Development, Hannah G. Reich, Deborah L. Robertson, Gretchen Goodbody-Gringley

Biology

Previous studies of symbiotic associations between scleractinians corals and Symbiodinium have demonstrated that the consortium of symbionts can change in response to environmental conditions. However, less is known about symbiont shuffling during early coral development, particularly in brooding species. This study examined whether Symbiodinium consortia (1) varied in Porites astreoides on shallow (10m) and upper mesophotic (30m) reefs, (2) changed during coral development, and (3) influenced growth of juveniles in different environments. Symbiodinium ITS2 sequences were amplified using universal primers and analyzed using phylotype-specific primers designed for phylotypes A, B, and C. Adults from both depths were found to host …

An On-Campus Botanical Tour To Promote Student Satisfaction And Learning In A University Level Biodiversity Or General Biology Course, Harish H. Ratnayaka

Faculty and Staff Publications

Outdoor, hands-on and experiential learning, as opposed to instruction-based learning in classroom, increases student satisfaction and motivation leading to a deeper understanding of the subject. However, the use of outdoor exercises in undergraduate biology courses is declining due to a variety of constraints. Thus, the goal of this paper is to describe a convenient, no-cost and flexible exercise using an on-campus botanical tour for strengthening specific knowledge areas of major plant groups. Its assessment on conduct and coverage, and student-perceived and actual knowledge gain is also described. Data presented derived from traditional biology undergraduates in sophomore year over nine fall …

Komarekiella Atlantica Gen. Et Sp. Nov. (Nostocaceae, Cyanobacteria): A New Subaerial Taxon From The Atlantic Rainforest And Kauai, Hawaii, Jeffrey R. Johansen, Guilherme Scotta Hentschke, Nicole Pietrasiak, Janaina Rigonato, Marli F. Fiore, Célia Leite Sant’Anna

2017 Faculty Bibliography

Six strains of Cyanobacteria sampled in the Brazilian Atlantic rainforest and one strain from Kauai, Hawaii, were studied using morphological and molecular approaches, including 16S rRNA gene phylogenies and 16S–23S ITS secondary structures, and are herein described as Komarekilla atlantica gen. et sp. nov.. Morphologically they are similar to Nostoc, Desmonostoc, Halotia, and Mojavia and indistinguishable from Chlorogloeopsis. The parsimony and Bayesian phylogenies of the 16S rDNA show that these strains are close to nostocacean strains, in strongly supported clades and separated from all other genera. The secondary structures of the 16S–23S ITS were very consistent between strains of K. …

Herbaceous Vascular Flora Of Forested Seep Wetlands In Winneshiek County, Iowa, Usa, Elizabeth A. Lynch, Anna Burke Weckwerth

Journal of the Iowa Academy of Science: JIAS

Forested seep wetlands dominated by skunk cabbage (Symplocarpus foetidus) occur frequently in the Canoe Creek watershed of the Upper Iowa River, but this type of wetland has not been described systematically in the upper Midwest. The goal of this study is to document the herbaceous plant flora of five seeps. Although individual seeps are small (200-500 m²), they provide habitat for a high number of plant species. Five seeps with total area less than 0.2 ha supported more than 120 native vascular herbaceous taxa, 20 of which have a coefficient of conservatism (C-value) of 7 or …

Political Ecology Of Medicinal Plant Use In Rural Nepal: Globalization, Environmental Degradation, And Cultural Transformation, Emily Dovydaitis

Honors Undergraduate Theses

Prior to the advent of biomedicine, rural communities in Nepal relied on phytochemically active compounds in medicinal plants as their primary source of medicine; however, ethnobotanical practices have shifted over time due to economic, environmental, and sociocultural stimuli. Findings from 2016 fieldwork conducted in Dumrikharka, Nepal and Tutung, Nepal are compared to existing literature to describe the political ecology of medicinal plants in rural Nepal.

Anthropogenic climate change threatens individual plant species and ecosystem biodiversity. Globalized markets unabated by weak conservation programs place increasing demands on medicinal plants. As indigenous plants become overharvested and more difficult to access, Nepalis incorporate …

Evaluation Of Filtration And Dna Extraction Methods For Environmental Dna Biodiversity Assessments Across Multiple Trophic Levels, Anni Djurhuus, Jesse Port, Collin Closek, Kevan Yamahara, Ofelia Romero-Maraccini, Kristine Walz, Dawn Goldsmith, Reiko Michisaki, Mya Breitbart, Alexandria Boehm, Francisco Chavez

Marine Science Faculty Publications

Metabarcoding of marine environmental DNA (eDNA), originating from tissue, cells, or extracellular DNA, offers the opportunity to survey the biological composition of communities across multiple trophic levels from a non-invasive seawater sample. Here we compare results of eDNA metabarcoding of multiple trophic levels from individual seawater samples collected from a kelp forest in Monterey Bay, California in order to establish methods for future cross-trophic level eDNA analysis. Triplicate 1 L water samples were filtered using five different 47 mm diameter membrane filters (PVDF, PES, GFF, PCTE, and NC) and DNA was extracted from triplicates of each filter-type using three widely-used …

Interactive Effects Of Cover Crops, Invertebrate Communities And Soil Health In Corn Production Systems, Claire Lacanne

Electronic Theses and Dissertations

The adoption of regenerative farming practices is gaining traction, but the costs and benefits are not often considered on a systems level. Encouraging biodiversity and soil health is the goal of many agricultural practices used in regenerative farming; regenerative systems employ practices which abide by the two main principles of increasing biodiversity and decreasing disturbance, with the goal of encouraging ecosystem functioning to minimize inputs and maximize the productivity of a farm. I examined the management of corn (Zea mays) fields across four states in the Upper Midwest region of the United States. Regenerative systems in this study …

Survey Results: Complexities And Overlaps In Existing Citizen Science Mosquito Projects, Yujia He, Elizabeth Tyson

Patterson School of Diplomacy and International Commerce Faculty Publications

Currently, multiple projects worldwide engage the public in the scientific process of learning about mosquito biodiversity or monitoring mosquitoes that carry diseases like Dengue, Chikungunya, Zika and Malaria. These projects are executed at different invasion-stages and different scenarios of epidemiological risk based on their country of origin. Through surveying 12 international research teams, this brief report illuminates the differences and the overlaps in the protocols and tools used by existing citizen science mosquito monitoring projects. The analysis covers project goals, requirements and support for participants, policy impact, digital tools and data privacy.

The Effects Of Disturbance And Species Specific Interactions On Diversity In An Agent Based Forest Simulation, Matthew E. Mills

Theses and Dissertations

In ecology literature, there is much data which suggests that conspecific negative density dependence (CNDD) and abiotic disturbances increase biodiversity in forests. This thesis elucidates the notion that not only do these two forces increase diversity, but they may also interact with one another in order to achieve higher levels of biodiversity. Abiotic disturbances, like fires and hurricanes, can indirectly impact conspecific effects because when these forces remove individuals from the landscape, the role of the conspecific effects will change. The interaction of these two factors in biodiversity are explored in an agent based forest simulation through a resource surface. …