Life Sciences Commons^™

Hydropower To The People: Implications Of A Comparative Macroinvertebrate Study On Either Side Of The Central Hidroeléctrica Topo In Tungurahua, Ecuador, Grace Mazur

Independent Study Project (ISP) Collection

This study uses macroinvertebrates as bioindicators to assess the water quality upstream and downstream of a hydroelectric project in Ecuador’s eastern cloud forest. Ecuador has increasingly turned to hydropower to supply its energy needs as pressure mounts to turn away from fossil fuels. This transition has been realized on the Río Topo, located in the province of Tungurahua. This study aims to determine how the Central Hidroeléctrica Topo (CHT), a diversion hydroelectric project (HEP) constructed on the Río Topo in the 2010s, has affected the water quality of the river. Samples were taken of benthic (bottom-dwelling) macroinvertebrates in the Río …

Regeneration Strategies And Forest Resilience To Changing Fire Regimes: Insights From A Goldilocks Model, Tanjona Ramiadantsoa, Zak Ratajczak, Monica G. Turner

Aspen Bibliography

Disturbances are ubiquitous in ecological systems, and species have evolved a range of strategies to resist or rebound following disturbance. Understanding how the presence and complementarity of regeneration traits will affect community responses to disturbance is increasingly urgent as disturbance regimes shift beyond their historical ranges of variability. We define "disturbance niche" as a species' fitness across a range of disturbance sizes and frequencies that can reflect the fundamental or realized niche, that is, whether the species occurs alone or with other species. We developed a model of intermediate complexity (i.e., a Goldilocks model) to infer the disturbance niche. We …

Is Biodiversity Declining In The Traditional Haymeadows Of Skye And Lochalsh, Scotland?, G. E. D. Tiley, D. G. L. Jones

IGC Proceedings (1977-2023)

Species-rich haymeadows have developed on crofts in the Isle of Skye and Lochalsh Districts of north-west Scotland as a result of a century or more of traditional land use. This has involved long rotations of late cutting for hay with aftermath grazing by cattle and short breaks for cropping. The traditional haymeadows are increasingly coming under threat from changes taking place in the countryside. A survey of the main haymeadows still remaining in Skye and Lochalsh was carried out during 2003 to assess the current botanical composition, management and conservation value, and to compare with earlier surveys.

Eating Biodiversity: Investigating The Links Between Grassland Biodiversity And Quality Food Production, A. Hopkins, H. Buller, C. Morris, J. D. Wood

IGC Proceedings (1977-2023)

Modern food production systems are generally detrimental to biodiversity, and the widespread loss of species-diverse grassland as a consequence of intensive farming methods is well documented. Since the 1980s, a range of policy measures and financial incentives for farmers have been introduced in Europe to halt (and in some cases, reverse) this trend, primarily to meet environmental objectives of species and habitat conservation and landscape protection. Biodiversity, where associated with agricultural production, has largely been regarded as a positive 'externality' to the process of food production; a ‘product’ which benefits wider society without necessarily conferring an agricultural benefit to the …

Grazing, Biodiversity And Pastoral Vegetation In The South Sudanien Area Of Burkina Faso, E. Botoni-Liehoun, P. Daget

IGC Proceedings (1977-2023)

Grazing impact on plant diversity is dominated by two contradictory views. In some studies, it has been found to lead to an increase in diversity and in other studies to a decrease associated with dominance of a few species (Nösberger et al., 1998, Hiernaux, 1998). In an Isoberlinia doka forest ecosystem, considered as the climax vegetation in the South Sudanien area of Burkina Faso, a study was carried out to assess the impact of grazing on the diversity of herbaceous species. The Isoberlinia doka forest is one type of South Sudanien savanna. The woody stratum is open and allowed …

Species Richness Affects Grassland Yield And Yield Stability Across Seasons, Sites And Years, David J. Barker, Reuben M. Sulc, M. R. Burgess, T. L. Bultemeier

IGC Proceedings (1977-2023)

The benefits of biodiversity (specifically species richness) are proposed to include both greater yield and greater stability of yield in a variable environment (Sanderson et al., 2004). Experimental evidence showing yield benefits is inconsistent (White et al., 2004). There is relatively little experimental data showing the effects of species richness on yield stability. The objective of this study was to measure the yield from mixtures with up to 12 species, and to measure the variability of yield between 2 sites, between spring and summer, and in 2 successive years.

Riparian Management In Intensive Grazing Systems For Improved Biodiversity And Environmental Quality: Productive Grazing, Healthy Rivers, S. R. Aarons, M. Jones-Lennon, P. Papas, N. Ainsworth, F. Ede, J. Davies

IGC Proceedings (1977-2023)

Within high rainfall intensive grazing systems of southern Victoria, riparian zones are often degraded due to vegetation clearing, stock access and inappropriate farm management. Streams in these landscapes often have poor water quality and reduced biodiversity due to degraded terrestrial and aquatic ecosystems. Improved management of riparian zones depends on developing tools and practices for integration into productive grazing systems. This paper describes the approaches used and the tools developed in the ‘Productive Grazing, Healthy Rivers: Improving riparian and in-stream biodiversity’ project.

Contributions Of The United States Department Of Agriculture Natural Resources Conservation Service To Conserving Grasslands On Private Lands In The United States, L. Peter Heard

IGC Proceedings (1977-2023)

The future of biodiversity in the USA is tied inseparably to activities taking place on private lands. Agriculture is by far the most important user of these lands, with about 50% or 900M acres managed as private cropland, grassland or rangeland. Decisions made by America’s farmers and ranchers directly affect grasslands and their impact on food supply, biodiversity, soil protection and water quality. Agricultural programs and policies in the USA have had a large influence on the choices available to farmers and ranchers in land management. Since the 1930s, USDA’s Natural Resource Conservation Service (NRCS) has been working with farmers, …

Unveiling The Nexus: The Interdependence Of Animal Welfare, Environment & Sustainable Development, World Federation For Animals (Wfa)

Nexus – UNEP – Animal Welfare, Environment, Sustainable Development

On 2 March 2022, the UN Environment Assembly (UNEA) adopted the Animal Welfare - Environment - Sustainable Development Nexus Resolution. In this resolution, UNEA acknowledged that "animal welfare can contribute to addressing environmental challenges". UNEA further acknowledged animal welfare's contribution to "promoting the One Health approach and achieving the Sustainable Development Goals." To understand these links, UNEA requested the UN Environment Programme (UNEP) to analyse and produce a report for the next convening of UNEA on the nexus between animal welfare, the environment, and sustainable development. "Unveiling the Nexus: The interdependence of animal welfare, environment & sustainable development" illuminates the …

Diverse Forage Mixtures Effect On Herbage Yield, Sward Composition, And Dairy Cattle Performance, M. A. Sanderson, K. Soder, N. Brzezinski, S. Goslee, H. Skinner, M. Wachendorf, F. Taube, L. Muller

IGC Proceedings (1977-2023)

Managing complex mixtures of plants to take advantage of spatial and temporal variability in land and climate may be one ecological approach to increase productivity of pastures. We tested the hypothesis that complex mixtures of forage species would yield more herbage and reduce weed competition compared with a simple grass-legume mixture in grazed pastures.

Additional Taxonomic Refinements Suggested By Genomic Analysis Of Butterflies, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Paul A. Opler, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Comparative analyses of genomic data reveal further insights into the phylogeny and taxonomic classification of butterflies presented here. As a result, 2 new subgenera and 2 new species of Hesperiidae are described: Borna Grishin, subgen. n. (type species Godmania borincona Watson, 1937) and Lilla Grishin, subgen. n. (type species Choranthus lilliae Bell, 1931) of Choranthus Scudder, 1872, Cecropterus (Murgaria) markwalkeri Grishin, sp. n. (type locality in Mexico: Sonora), and Hedone yunga Grishin, sp. n. (type locality in Bolivia: Yungas, La Paz). The lectotype is designated for Aethilla toxeus Plötz, 1882. The type locality of Dion uza (Hewitson, 1877) is likely …

Ancyronyx Jhoanae Sp. Nov. (Coleoptera: Elmidae), A New Spider Riffle Beetle Species From Luzon, Philippines, And New Records For A. Tamaraw Freitag, 2013, Christalle Beatriz N. Seno, Hendrik Freitag

Biology Faculty Publications

Ancyronyx jhoanae sp. nov., a new species of genus Ancyronyx Erichson, 1847 from Luzon is described using an integrative taxonomic approach. Illustrations of habitus and diagnostic characters are provided. Molecular analysis of a fragment of the COI 5’-end was employed to support the morphological species concept. Differences from closely related species based on molecular and morphological data are discussed. First records of A. tamaraw Freitag, 2013 from Luzon are reported.

Grasslands1 For Production And The Environment, David R. Kemp, David L. Michalk

IGC Proceedings (1977-2023)

1. To manage grasslands for production and enhanced environmental values requires a redefinition of the frameworks within which management decisions are made, and a tailoring of practices to suit the ways that farmers operate.
2. Improving the perenniality and permanence of grasslands usually leads to better environmental and production outcomes.
3. There is a case for a more conservative approach to utilising grasslands in order to sustain the functioning of local ecosystems and to improve water quality, nutrient and energy cycling and biodiversity.
4. A landscape rather than paddock focus is more appropriate for meeting current grassland management objectives. Grasslands can be triaged to …

Grassland In Ireland And The Uk, Myles Rath, S. Peel

IGC Proceedings (1977-2023)

1. Grassland is the dominant land use option in Ireland and the UK, and is characterised by a long growing season.
2. Dynamic, interactive systems of grassland management have been developed which combine high grass dry matter intakes with good sward quality. In the better grassland areas milk yields in excess of 7000 kg/cow are attainable with low levels of concentrate supplementation. In the times to come, measures to protect the environment will constrain stocking rates, and fertiliser and manure use on intensive grassland enterprises.
3. A high proportion of beef and sheep farms participate in voluntary, EU-funded agri- environmental schemes that promote …

Diversity And Variation In Nutritive Value Of Plants Growing On 2 Saline Sites In Southwestern Australia, H. C. Norman, R. A. Dynes, D. G. Masters

IGC Proceedings (1977-2023)

In south-western Australia 10% or 1.8 million ha of the farmed area is affected by dryland salinity and a further 6 million ha are at risk of salinity (NLWRA, 2001). Animal production from saltbush (Atriplex spp.)-based pasture systems represents the most likely large-scale opportunity for productive use of saline land in the short to medium term. Feeding saltbush-based pastures as a maintenance feed during the prolonged autumn feed gap typical in Mediterranean-type climates maximises their economic value. The aim of this study was to explore the diversity and nutritive value of plants that typically persist in saltbush-based saltland pastures.

Do Regional Dna Barcode Databases Lead To More Efficient Specimen Identification?, Michael Kerr, Steven D. Leavitt

Library/Life Sciences Undergraduate Poster Competition 2023

DNA barcoding is a method for identifying specimens from specific regions of DNA. 1 Metabarcoding focuses on large, multi specimen scales. 2 These approaches rely on DNA databases for sequence identification, 2 but these databases often lack data from many species, 3 especially from poorly studied groups such as fungi 4 and lichens, which can lead to failure in specimen identification.

Thirteen New Species Of Butterflies (Lepidoptera: Hesperiidae) From Texas, Jing Zhang, Qian Cong, Nick V. Grishin

Insecta Mundi

Analyses of whole genomic shotgun datasets, COI barcodes, morphology, and historical literature suggest that the following 13 butterfly species from the family Hesperiidae (Lepidoptera: Papilionoidea) in Texas, USA are distinct from their closest named relatives and therefore are described as new (type localities are given in parenthesis): Spicauda atelis Grishin, new species (Hidalgo Co., Mission), Urbanus (Urbanus) rickardi Grishin, new species (Hidalgo Co., nr. Madero), Urbanus (Urbanus) oplerorum Grishin, new spe­cies (Hidalgo Co., Mission/Madero), Telegonus tsongae Grishin, new species (Starr Co., Roma), Autochton caballo Grishin, new species (Hidalgo Co., 6 mi W of Hidalgo), Epargyreus fractigutta …

Hitting The Sweet Spot: Optimizing Camera Trapping Effort For Estimating Biodiversity In Coastal Environments, Ella Dipetto, Oleksii Dubovyk, Chi Wei, Angela Brierly, Eric Walters, Alex Teodorescu, Jillian Murphy

College of Sciences Posters

Wildlife trail cameras, or “camera traps”, have become an effective tool in ecological research and conservation management across a variety of ecosystems to monitor a wide range of taxa. Camera trapping allows for extended survey time in traditionally hard-to-survey environments and has greatly increased our ability to detect cryptic species. One question ecologists commonly face is how much sampling effort is required to accurately estimate community composition. Despite the abundant literature that uses camera trapping techniques, few studies have occurred in coastal saltmarsh ecosystems. These ecosystems are being lost at a rapid rate from land conversion, pollution, and other anthropogenic …

It Turned Into A Bioblitz: Urban Data Collection For Building Scientific Literacy And Environmental Connection, Kelly O'Donnell, Lisa Brundage

Publications and Research

In 2013, Macaulay Honors College redesigned its required science curriculum to focus on scientific literacy skills rather than content. Central to this shift was inclusion of a data collection event, a BioBlitz, to provide students with the basis for their own semester-long research projects. Students are teamed with naturalists in an urban green space to find as many species as they can in 24 h and to contribute to a global biodiversity database via the app iNaturalist. We have learned two important lessons: (1) developing an interdisciplinary curriculum with a high degree of experiential learning is more successful when both …

Conservation Easements: A Tool For Preserving Wildlife Habitat On Private Lands, Robin M. Rotman, Sarah A. Brown, Michael A. Powell, Sonja A. Wilhelm Stanis

Faculty Publications

Conservation easements are an essential tool for conserving private lands, and they have great potential for enhancing wildlife habitat and biodiversity. Private land conservation in the United States is likely to increase in the coming years, in light of Executive Order No. 14,008, issued by President Joseph Biden on January 27, 2021, which set a goal of conserving at least 30% of U.S. lands and waters by 2030 (Executive Office of the President 2021). There is, therefore, a need to evaluate the effect of conservation easements on wildlife habitat and biodiversity and to make recommendations for further enhancing the effectiveness …

Biodiversity Of Philippine Marine Fishes: A Dna Barcode Reference Library Based On Voucher Specimens, Katherine E. Bemis, Matthew G. Girard, Mudjekeewis D. Santos, Kent E. Carpenter, Jonathan R. Deeds, Diane E. Pitassy, Nicko Amor L. Flores, Elizabeth S. Hunter, Amy C. Driskell, Kenneth S. Macdonald Iii, Lee A. Weigt, Jeffrey T. Williams

Biological Sciences Faculty Publications

Accurate identification of fishes is essential for understanding their biology and to ensure food safety for consumers. DNA barcoding is an important tool because it can verify identifications of both whole and processed fishes that have had key morphological characters removed (e.g., filets, fish meal); however, DNA reference libraries are incomplete, and public repositories for sequence data contain incorrectly identified sequences. During a nine-year sampling program in the Philippines, a global biodiversity hotspot for marine fishes, we developed a verified reference library of cytochrome c oxidase subunit I (COI) sequences for 2,525 specimens representing 984 species. Specimens were primarily purchased …

Comparison Of Groundwater Chemistry And Associated Biodiversity Of Sulfidic Karst Habitats In Southcentral Kentucky, Kendall Wheeler

Mahurin Honors College Capstone Experience/Thesis Projects

In most ecosystems, primary production is conducted by plants or photosynthetic microbes; however, extremophilic sulfur-oxidizing bacteria can use hydrogen sulfide gas (H2S) as an electron donor to produce metabolic energy in a type of metabolism called chemoautotrophy. These ecosystems are a prominent feature of some karst landscapes, and two have been observed in the Mammoth Cave system, Sulphur River in Parker Cave and Marianne’s Pass in Mammoth Cave National Park respectively.

Sulfidic water is ubiquitous in southcentral Kentucky and is strongly associated with hydrocarbon deposits. This oil boom of the 1880s in this region predates most environmental regulation and records …

Csi Botany: Dna Barcode “Fingerprints” Identify Cryptic Urban Flora, Luis R. Vega

Theses and Dissertations

As short genomic markers, DNA barcodes can play a role in conservation by identifying cryptic species and hybrids when morphological approaches fall short. Here we present our application of barcodes to the identities of two wetland taxa as part of an ongoing floristic inventory of Van Cortlandt Park (VCP), Bronx, NY. Previous barcode data by Marriott et al. (2018) identified the VCP lake water lily as the exotic Nymphaea alba, rather than the native N. odorata as historically described. In addition, cattails in the park were historically identified as the native Typha latifolia and the exotic T. angustifolia …

A Biodiversity Survey Of The Soil Crusts Of The Geographically Isolated San Nicholas Island, California, Usa And Description Of Species In Three Genera (Atlanticothix, Pycnacronema, Konicacronema) Previously Restricted To Brazil Using A Polyphasic Approach To Cyanobacterial Taxonomy, Brian Jusko

Masters Theses

San Nicholas Island, California, USA is a geographically-isolated island that experiences a semiarid climate and exhibits significant topographic and geologic diversity. Access to the island is restricted to the public and, as a result, only one previous study has been done on the algal biodiversity of its biological soil crusts. The previous study used morphology as the sole basis of species identification, and it was the aim of this study to corroborate and expand upon the results by including molecular data. Using 16S rRNA and 16S–23S ITS sequences and phylogenetic analyses, a diverse set of taxa were identified and are …

Harnessing Citizen Science And Collections Data For Invasive Plant Surveillance, Adin L. Ring

Library Map Prize

Our main source of information about the distribution of invasive plants in the United States comes from occurrence records in three categories: biological collections (physical plant specimens in museums), citizen science (opportunistic observations by untrained civilians), and invasion monitoring (structured observation by government or non-profit agencies). This study compiles a set of 3.1 million occurrence records of 3,578 introduced plant species in the continental United States, and infers spatial, temporal, and taxonomic biases by comparing the three categories of data. We find that citizen science contributes the largest bulk of records, and does better capturing visually conspicuous plants and very …

Are Biodiverse Communities More Resistant To Invasion? A Case Study With Marine Fouling Communities, Taylor Robert Bruntil

Cal Poly Humboldt theses and projects

The theory of biotic resistance predicts that more diverse communities should be less susceptible to invasion by novel species, but given the opposing results of multiple observational and experimental studies in marine systems, it is unclear how changes in environmental conditions can affect invasion success in communities that differ in diversity. I used marine fouling communities to test how the diversity of the species present in an initial community (hereafter termed “resident species”) affected the establishment and growth of all species not present in the initial communities (hereafter termed “novel species”) at two locations at the Eureka Public Marina, in …

Fish Community Responses To Environmental And Anthropogenic Conditions In West Virginia, Katherine A. Adase

Graduate Theses, Dissertations, and Problem Reports (ETD)

While Appalachia is among the oldest region in the world, Central West Virginia watersheds have been impacted by anthropogenic stressors, including extractive mining and timber harvest industries, as well as urban development and agriculture, damns, fracking, mining, and land cover use. This study aims to understand how natural environmental and human altered gradients impact affect diversity of fish communities in streams and rivers throughout Central Appalachia. The first chapter aims to provide insights into the impact of the 2016 low head dam removals on taxonomic and functional fish communities in the West Fork River, West Virginia and the potential benefits …

Comparison Of Botanical Composition Methods And Change Over Time In Kentucky Pastures, Echo Elizabeth Gotsick

Theses and Dissertations--Plant and Soil Sciences

Botanical composition of pastures has been measured with numerous methods over the last century, but there have been limited direct comparisons between methods. The objective of this study was to compare botanical composition methods, to determine the most accurate and efficient method, and to access pasture composition change over time. Six farms with two pastures each were monitored across the state of Kentucky. Sampling occurred fall 2020 through fall 2022, three times a year using the following methods: step point, visual estimation, occupancy grid, and point quadrat (used as a reference method). The occupancy grid showed the highest similarity to …

A Multi-Taxon Analysis Of European Red Lists Reveal Major Threats To Biodiversity, Axel Hochkirch, Melanie Bilz, Catarina C. Ferreira, Anja Danielczak, David Allen, Ana Nieto, Carlo Rondinini, Kate Harding, Craig Hilton-Taylor, Caroline M. Pollock, Mary Seddon, Jean-Christophe Vié, Keith N. A. Alexander, Emily Beech, Manuel Biscoito, Yoan Braud, Ian J. Burfield, Filippo Maria Buzzetti, Marta Cálix, Kent E. Carpenter, Ning Labbish Chao, Dragan Chobanov, Maarten J. M. Christenhusz, Bruce B. Collette, Mia T. Comeros-Raynal, Neil Cox, Matthew Craig, Annabelle Cuttelod, William R. T. Darwall, Benoit Dodelin, Nicholas K. Dulvy, Eve Englefield, Michael F. Fay, Nicholas Fettes, Jörg Freyhof, Silvia García, Mariana García Criado, Michael Harvey, Nick Hodgetts, Christina Ieronymidou, Vincent J. Kalkman, Shelagh P. Kell, James Kemp, Sonia Khela, Richard V. Lansdown, Julia M. Lawson, Danna J. Leaman, Joana Magos Brehm, Nigel Maxted, Rebecca M. Miller, Eike Neubert, Baudewijn Odé, David Pollard, Riley Pollom, Rob Pople, Juan José Presa Asensio, Gina M. Ralph, Hassan Rankou, Malin Rivers, Stuart P. M. Roberts, Barry Russell, Alexander Sennikov, Fabien Soldati, Anna Staneva, Emilie Stump, Andy Symes, Dmitry Telnov, Helen Temple, Andrew Terry, Anastasiya Timoshyna, Chris Van Swaay, Henry Väre, Rachel H. L. Walls, Luc Willemse, Brett Wilson, Jemma Window, Emma G. E. Wright, Thomas Zuna-Kratky

Biological Sciences Faculty Publications

Biodiversity loss is a major global challenge and minimizing extinction rates is the goal of several multilateral environmental agreements. Policy decisions require comprehensive, spatially explicit information on species’ distributions and threats. We present an analysis of the conservation status of 14,669 European terrestrial, freshwater and marine species (ca. 10% of the continental fauna and flora), including all vertebrates and selected groups of invertebrates and plants. Our results reveal that 19% of European species are threatened with extinction, with higher extinction risks for plants (27%) and invertebrates (24%) compared to vertebrates (18%). These numbers exceed recent IPBES (Intergovernmental Platform on Biodiversity …

Cutaneous Microbiome Of Red Fox (Vulpes Vulpes) Infected With Sarcoptic Mange (Sarcoptes Scabiei), Jacqueline C. Robidoux

Honors Theses and Capstones

Sarcoptic mange is a parasitic skin disease that affects countless mammals worldwide, including red foxes (Vulpes vulpes). The symptoms, such as hair loss, crusting, and the number of mites, vary between individual foxes. Sarcoptic mange damages the skin barrier, which in turn disrupts the biodiversity of bacteria in the microbiome. It is unknown what the biodiversity of bacteria is at each stage of the disease. This experiment will compare the microbiomes of different samples with and without mange; in hopes to reveal a connection between the different severities of sarcoptic mange and the biodiversity of bacteria and fungi …