Life Sciences Commons^™

Regenera+.Uy: Designing A Co-Innovation Process To Apply The Principles Of Regenerative Livestock Production, Oscar Blumetto, M. Bustamante, A. Castagna, D. Caresani, G. Ciappesoni, R. Baptista, I. De Barbieri

IGC Proceedings (1977-2023)

Consumers around the world are beginning to demand products whose production systems have environmental guarantees. Among them, those derived from regenerative agriculture have a growing demand in many markets. A comprehensive environmental assessment was carried out in 9 case studies of mixed livestock production farms (cattle and sheep) in Uruguay as a basis for the development of a system redesign process following the principles of regenerative agriculture. The results show that emission intensity was 16.0, 10.5, and 49.2 kg CO2 eq kg-1 of beef, sheep meat, and greasy wool, respectively. Also, a simulation exercise shows a significative reduction of emission …

Ecosystem Benefits Of Invasive Annual Grass Removal, S. L. Clark

IGC Proceedings (1977-2023)

Invasive winter annual grasses (IAGs) are altering rangeland ecosystems across millions of hectares in the western US. These winter annuals outcompete native plants for soil moisture and nutrients, leading to devastating impacts on ecosystem functions. The IAG seedbank is short-lived and often does not persist beyond 3 years. Past tools for IAG control have only provided short-term control or caused injury to the native plant community, making it difficult for researchers to assess the ecosystem benefits of IAG removal. A newer herbicide option, indaziflam, provides IAG control for three or more years. Indaziflam’s extended soil residual control and tolerance of …

Below Ground Benefits Of Cactus Opuntia Stricta Under Rangeland Conditions In Laikipia, Kenya, K. T. Oduor, Jose C. B. Dubeux, W. O. Owino, M. Ruiz-Moreno, L. M. D. Queiroz, I. L. Bretas

IGC Proceedings (1977-2023)

Cactus Opuntia stricta primarily invades arid and semi-arid lands (ASALs), which form more than 80% of Kenya’s landmass. The ability of the plant to tolerate poor soils and accumulate biomass under low precipitation has resulted in studies into its potential use by pastoral communities for biofuel and livestock feed. However, few studies have assessed the below-ground benefits associated with cactus under rangeland conditions. In this study, we evaluated the root contributions of the invasives cactus Opuntia stricta under rangeland conditions in Laikipia, Kenya. The experiment was laid out in a randomized complete block design with ten (10) replicates, each measuring …

Integrating Plant Secondary Metabolites And Foraging Behavior To Enhance Animal Health In Ruminant Production Systems, J. J. Villalba, J. W. Macadam, S. Van Vliet, F. D. Provenza

IGC Proceedings (1977-2023)

Legumes and forbs contain bioactives or plant secondary compounds (PSC) with potential to enhance animal health through their antibiotic, antioxidant and immunomodulatory properties that are evident even at small dietary concentrations. In turn, ruminants can regulate their ingestion of PSC through behavioral mechanisms that allow for the efficient achievement of homeostasis. High concentrations of PSC lead to food avoidance, whereas lower content of PSC in the diet achieved through regulatory mechanisms of ingestion could promote medicinal and/or prophylactic effects in the animal and concomitant health benefits to milk and meat products. Under this context, we discuss the restructuring of rangelands …

Ruminant Agriculture: A Tool For Climate Change Mitigation, B. L. Peterson Munks, M. Rellaford, J. Shanahan, S. Urbanowitz, F. Wang, S. Wang, Y. Zhao, E. Bender

IGC Proceedings (1977-2023)

The quest to address and mitigate climate change has been dubbed a “wicked problem” as it involves many interconnected processes requiring a multifaceted, comprehensive approach. Animal agriculture contributes roughly 15% to CO2 equivalent (CO2e) emissions; as a result, a concerted effort is being made to develop and promote more climate-friendly production practices. These practices include species diversification in grasslands, improving grazing rotation, adding nitrogen amendments, and the use of feed additives to reduce enteric fermentation. Successful inter-seeding of legumes and deep-rooted native grasses increases soil organic carbon (SOC) pools in many systems by increasing the biological carbon inputs to the …

Biodiverse Forage Mixtures For Bees And Beef Cattle, J. O. C. Kubesch, S. P. Greiner, G. J. Pent, J. L. Reid, B. F. Tracey

IGC Proceedings (1977-2023)

Introduction: Beef cattle performance in the southeastern US is limited by tall fescue (TF) toxicosis. Native warm season grasses (NWSGs) can provide alternative forage for cattle and reduce TF toxicosis. Pollinator populations, especially bees, also have been declining across North America. Introducing native wildflowers into tall fescue grasslands might improve pollinator populations. An ongoing grazing experiment in central Virginia USA is testing the feasibility of integrating wildflowers and native grasses as a way to generate ecosystem services.

Objectives: This study sought to determine whether including native grasses and wildflowers in tall fescue pasture systems could improve beef heifer performance.

Methods: …

Adaptive Multi-Paddock Grazing Of Cover Crops In Integrated Crop-Livestock Systems In Mediterranean Regions: A Review, G. A. Musto, A. Swanepoel, J. A. Strauss

IGC Proceedings (1977-2023)

Small-grain farming systems in Mediterranean climatic regions are characterized by poor quality soils, high climate variability, and resulting heavy agrochemical reliance. The integration of continuously grazed monocrop pasture phases has improved soil fertility, crop productivity, and mitigated financial risk. However, emerging sustainability issues such as herbicide resistance, inputs costs rising disproportionately to product prices, and increasing climate variability and predictability, drive the need for ongoing innovation in crop-livestock integration. The option of growing multi-species cover crops as a dual-forage and service crop is evaluated within Mediterranean climate contexts. Furthermore, the option of subjecting the cover crops to adaptive multi-paddock (AMP) …

Medium-Term Impacts Of Grassland And Forestry Integration On The Environmental Performance Of A New Zealand Pastoral System, Michael B. Dodd, A. O. Hughes, Grant M. Rennie

IGC Proceedings (1977-2023)

At the IGC in 2008, we presented a paper outlining a project that aimed to improve the economic and environmental performance of a New Zealand hill country pastoral catchment farm system. This project was undertaken by engaging a wide group of sector stakeholders in visioning, modelling, planning and implementing significant land use change within a 296-hectare pastoral farm. In recognition of developing sectoral views of agricultural sustainability, the major changes involved pine afforestation, livestock production intensification, protection of waterways and indigenous bush restoration. The report in 2008 outlined the positive impacts on key farm systems and water quality performance indicators …

Taxonomic Advances Driven By The Genomic Analysis Of Butterflies, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

This study presents new findings based on a large-scale analysis of butterfly genomic sequences. Focusing on species identification through comparative genomics, we define subspecies as populations differentiated to a lesser extent than distinct species ("species in the making"). Additionally, we propose further adjustments to the current butterfly classification. As a result, 3 subgenera, 12 species, and 4 subspecies are described as new. New subgenera are (type species in parenthesis): Hyalaus Grishin, subgen. n. (Papilio epidaus E. Doubleday, 1846) of Eurytides Hübner, [1821] (Papilionidae Latreille, [1802]) and Astria Grishin, subgen. n. (Lycaena astraea Freyer, 1851) of Glaucopsyche Scudder, 1872 …

A Comparison Of Four Methods Of Botanical Analysis In Kentucky Cattle Pastures, Echo Elizabeth Gotsick, S. Ray Smith, Jimmy C. Henning, Christopher D. Teutsch

IGC Proceedings (1977-2023)

Throughout the many decades of grassland and forage research, practitioners have used many different methods to assess botanical composition. While a few of these methods have proven to be accurate and efficient, there has been limited direct comparison between methods. The objective of this study was to determine an accurate and efficient method to determine botanical composition for researchers, practitioners, and students. Six farms with two pastures each were monitored across the state of Kentucky. Sampling started fall 2020 and continued through fall 2022 with measurements taken three times a year using the following measurement techniques: step point, visual estimation, …

Checklist And Key To The Millipede Species Of Georgia, United States, With Notes On Distribution, Lance Andrew, Bruce Snyder

Graduate Research Showcase

Millipedes are an exceptionally diverse class of animals that have an impact on soil structure and nutrient cycling. Despite their abundance, importance, and wide distribution, they are understudied compared to other animal taxa, and biogeographical information is scant. Georgia, though the largest state by land area east of the Mississippi River, has largely been overlooked by regional millipede checklists. Without baseline species distributions and abundances to inform wildlife management decisions, sufficient measures cannot be taken to preserve millipede biodiversity, especially in light of recent changes in climate and land use. Taxonomic resources for millipede identification in North America are also …

The Impact Of Isolation From Other Members Of The Greater Bamboo Lemur (Prolemur Simus) Species On The Behavior Of A Lone Greater Bamboo Lemur In Ranomafana National Park, Marissa N. Mccandless, Alex Casamassima, Sophie Thomas

Undergraduate Research (Journal)

Across Madagascar, many lemur species are declining in number due to deforestation perpetuated by slash and burn agriculture. Ranomafana National Park hosts 12 unique lemur species, one of which has a local population of just a single individual- the Greater Bamboo lemur (Prolemur simus). Being extremely social beings, we theorize that isolation from members of one’s species will change behavioral patterns. To test this hypothesis, we used focal animal sampling to record the behavior of the Greater Bamboo lemur for about 40 hours over a five day period. We compared our results to behavioral data collected of lemurs in a …

Documenting Plant Biodiversity At The Emu-Owned Parsons Center For Arts And Sciences, Emily Edwards

Master's Theses and Doctoral Dissertations

We present the first vascular plant species checklist for the Eastern Michigan-University-owned property called the Parsons Center for Arts and Sciences. A voucher for each plant species has been deposited in the Eastern Michigan College herbarium and collection data is digitized in the Consortium of Midwest Herbaria. A minimum of three images per species are also available on iNaturalist . The Consortium and iNaturalist databases are publicly available and provide georeferenced locations for each plant. One hundred seventy-one plant species (in 137 genera and 61 families) were documented and identified, representing about 15% of plant species and 41% of families …

Measuring Nature’S Contributions To People Provided By Species In The Gulf Of Maine Rocky Intertidal Ecosystem, Madelyn L. Eippert

Honors Theses

Ecosystem services aim to quantify the value of nature provided to humans. However, Ecosystem services are typically measured at the level of the ecosystem as a whole and do not consider interactions between species in an ecosystem. Ultimately, the species in an ecosystem determine the services that are provided. Measuring ecosystem services at the landscape level misses the complex interactions and changing biodiversity of ecosystems. Currently, there is no accepted framework to link ecosystem services to species. In this thesis, I developed a framework to link Nature’s Contributions to People (NCP) to species. NCP includes 18 specific contributions (i.e. 18 …

Assessment Of The Ecological Integrity Of Two Wetland Sites Within Eastern Michigan University’S Fish Lake Environmental Education Center (Fleec), Brianna Rice

Master's Theses and Doctoral Dissertations

Wetland ecosystems function as reservoirs of biodiversity for both terrestrial and aquatic organisms, and are among the most vulnerable ecosystems to degradation. The ecological integrity of two wetlands at Eastern Michigan University’s Fish Lake Environmental Education Center, a bog and one vernal pool, was assessed. Plant species richness was used to conduct Floristic Quality Assessments (FQA) using the coefficient of conservatism and wetland indicator status for each species. The Michigan Rapid Assessment Method (MiRAM) was conducted as a more comprehensive assessment of each ecosystem. The bog had an FQA of 31.6 and a MiRAM: 81/100, representing high-quality wetland conditions. The …

Myxomycetes Of Subantarctic Macquarie Island, Steven L. Stephenson

Biological Sciences Faculty Publications and Presentations

An expedition to subantarctic Macquarie Island was carried out during the period of late January to early May of 1995 with the objective of documenting myxomycete biodiversity. Collecting on the island yielded 412 field collections, with another 14 collections were obtained with the use of the moist chamber culture technique. A total of twenty-six species representing 13 genera was recorded. This is the largest set of data yet available on the myxomycetes associated with any high-latitude area of the Southern Hemisphere. Prior to the expedition, only a single species was known from Macquarie Island. The purpose of this paper is …

A Case Of One Step Forward And Two Steps Back? An Examination Of Herbicide-Resistant Weed Management Using A Simple Agroecosystem Dynamics Model, Srinadh Kodali, Chris Flores-Lopez, Isabelle Lobdell, Branson Kim, James C. Russell, Lane Michna, Benjamin L. Turner

Mechanical & Aerospace Engineering Faculty Publications

Global herbicide-resistant weed populations continue rising due to selection pressures exerted by herbicides. Despite this, herbicides continue to be farmers’ preferred weed-control method due to cost and efficiency relative to physical or biological methods. However, weeds developing resistance to herbicides not only challenges crop production but also threatens ecosystem services by disrupting biodiversity, reducing soil health, and impacting water quality. Our objective was to develop a simulation model that captures the feedback between weed population dynamics, agricultural management, profitability, and farmer decision-making processes that interact in unique ways to reinforce herbicide resistance in weeds. After calibration to observed data and …

Urban Nature Indexes Tool Offers Comprehensive And Flexible Approach To Monitoring Urban Ecological Performance, Jennifer Rae Pierce, Laura Costadone, Lelani Mannetti, Joeri Morpurgo, Charlyn Elaine Green, Michael D. Halder, Pablo Arturo Lopez Guijosa, Abner L. Bogan, Russell Galt, Jonathan Hughes

ODU Articles

We present the Urban Nature Indexes (UNI), a comprehensive tool that measures urban ecological performance under one standard framework linked to global commitments. The UNI was developed by interdisciplinary experts and evaluated by practitioners from diverse cities to capture each city’s ecological footprint from local to global scale. The UNI comprises six themes (consumption drivers, human pressures, habitat status, species status, nature’s contributions to people, and governance responses) that encompass measurable impacts on climate change, biodiversity loss, ecosystem services, pollution, consumption, water management, and equity within one comprehensive system. Cities then adapt the UNI to their context and capacity by …

A Review Of Herpetofaunal Distributions In Arkansas With Special Emphasis On Contributions From Citizen Science: Part I – Snakes, R. Jacobs, N. Ortiz, J. Jackson, J.D. Willson, K.G. Roberts, R. Kannan

Journal of the Arkansas Academy of Science

We present a comprehensive updated review of the distributions of the 38 species of snakes in Arkansas. We compare historical and current distributions with citizen science data uploaded and verified in iNaturalist, a leading biodiversity monitoring online citizen science database. The Arkansas Herpetological Atlas, a website maintaining species occurrence records, is also used and compared. We highlight the role played by iNaturalist in enhancing our knowledge of snake distributions in Arkansas. 10,885 verified and vetted Research Grade (RG) observations of Arkansas snakes have been recorded in iNaturalist, expanding the known distributions of 36 of the 38 species. This is the …

Pcb Remediation In Transitional Floodplain Forests Along The Housatonic River, Soleil Laurin

Scripps Senior Theses

Human development affects natural environments in more ways than climate change, from the introduction of nonnative species and deforestation to pollution and urbanization. This is a case study examining the effects of PCB remediation on transitional floodplain forest along the Housatonic River in Western Massachusetts. The Housatonic River had previously been contaminated with PCBs and portions had been remediated. This study aims to determine the effects this remediation had on transitional floodplain forests, as well as provide a preliminary biodiversity assessment for sites that are planned to be remediated of PCBs by the Environmental Protection Agency. The study was carried …

Bibliography, Charles H. Smith

Faculty/Staff Personal Papers

Bibliography of publications by Charles H. Smith.

Deep Transfer Learning-Based Bird Species Classification Using Mel Spectrogram Images, Mrinal Kanti Baowaly, Bisnu Chandra Sarkar, Md.Abul Ala Walid, Md. Martuza Ahamad, Bikash Chandra Singh, Eduardo Silva Alvarado, Imran Ashraf, Md. Abdus Samad

School of Cybersecurity Faculty Publications

The classification of bird species is of significant importance in the field of ornithology, as it plays an important role in assessing and monitoring environmental dynamics, including habitat modifications, migratory behaviors, levels of pollution, and disease occurrences. Traditional methods of bird classification, such as visual identification, were time-intensive and required a high level of expertise. However, audio-based bird species classification is a promising approach that can be used to automate bird species identification. This study aims to establish an audio-based bird species classification system for 264 Eastern African bird species employing modified deep transfer learning. In particular, the pre-trained EfficientNet …

Use Of Thermal Microhabitats By Herpetofauna In A Fragmented Rainforest Landscape In Colombia, Catalina Valderrama

Masters Theses

No abstract provided.

Half Of Atlantic Reef-Building Corals At Elevated Risk Of Extinction Due To Climate Change And Other Threats, Luis Gutierrez, Beth Polidoro, David Obura, Francoise Cabada-Blanco, Christi Linardich, Emma Pettersson, Paul Pearce-Kelly, Krista Kemppinen, Juan Jose Alvarado, Lorenzo Alvarez-Filip, Anastazia Banaszak, Pilar Casado De Amezua, James Crabbe, Aldo Croquer, Joshua Feingold, Elizabeth Goergen, Stefano Goffredo, Bert Hoeksema, Danwei Huang, Emma Kennedy, Diego Kersting, Marcelo Kitahara, Petar Kružić, Margaret Miller, Flavia Nunes, Juan Pablo Quimbayo, Andrea Rivera-Sosa, Rosa Rodríguez-Martínez, Nadia Santodomingo, Michael Sweet, Mark Vermeij, Estrella Villamizar, Greta Aeby, Khatija Alliji, Daniel Bayley, Elena Couce, Benjamin Cowburn, C. Isabel Nuñez Lendo, Sean Porter, Kaveh Samimi-Namin, Tom Shlesinger, Bryan Wilson

Biological Sciences Faculty Publications

Atlantic reef-building corals and coral reefs continue to experience extensive decline due to increased stressors related to climate change, disease, pollution, and numerous anthropogenic threats. To understand the impact of ocean warming and reef loss on the estimated extinction risk of shallow water Atlantic reef-building scleractinians and milleporids, all 85 valid species were reassessed under the IUCN Red List Categories and Criteria, updating the previous Red List assessment of Atlantic corals published in 2008. For the present assessment, individual species declines were estimated based on the modeled coral cover loss (1989–2019) and projected onset of annual severe bleaching events (2020–2050) …

Abalones At Risk: A Global Red List Assessment Of Haliotis In A Changing Climate, Howard Peters, Gina M. Ralph, Laura Rogers-Bennett

Biological Sciences Faculty Publications

There is increasing awareness that marine invertebrates such as abalones are at risk from the combined stressors of fishing and climate change. Abalones are an important marine fishery resource and of cultural importance to Indigenous and non-Indigenous people. A highly priced marine delicacy, they are inherently vulnerable: individuals are slow-growing and long-lived and successful reproduction requires dense assemblages. However, their global conservation status is poorly understood. Using IUCN Red List methodology, we assessed the extinction risk to all 54 species of abalone (genus Haliotis). Of the 21 fished commercially for human consumption either now and/or in the past, 15 …

Widespread Crab Burrows Enhance Greenhouse Gas Emissions From Coastal Blue Carbon Ecosystems, Kai Xiao, Yuchen Wu, Feng Pan, Yingrong Huang, Hebo Peng, Meiqing Lu, Yan Zhang, Hailong Li, Yan Zheng, Chunmiao Zheng, Yan Liu, Nengwan Chen, Leilei Xiao, Guangxuan Han, Yasong Li, Pei Xin, Ruili Li, Bochao Xu, Faming Wang, Joseph J. Tamborski, Alicia M. Wilson, Daniel M. Alongi, Isaac R. Santos

OES Faculty Publications

Fiddler crabs, as coastal ecosystem engineers, play a crucial role in enhancing biodiversity and accelerating the flow of material and energy. Here we show how widespread crab burrows modify the carbon sequestration capacity of different habitats across a large climatic gradient. The process of crab burrowing results in the reallocation of sediment organic carbon and humus. Crab burrows can increase more greenhouse gases emissions compared to the sediment matrix (CO2: by 17-30%; CH4: by 49-141%). Straightforward calculations indicate that these increased emissions could offset 35-134% of sediment carbon burial in these two ecosystems. This research highlights the complex interactions between …

Escarpments Within Mediterranean Seagrass Posidonia Oceanica Meadows Increase Habitat Heterogeneity And Structural Complexity Enhancing Fish Diversity And Biomass, Enric Gomis, Enric Ballesteros, Irene Bernabeu, Karina Inostroza, Miguel A. Mateo, Oscar Serrano

Research outputs 2022 to 2026

Seagrass meadows provide important ecosystem services including carbon sequestration, coastal protection from erosion, and sustained biodiversity and fisheries thereby improving the wellbeing and livelihoods of coastal communities. The erosion of millenary deposits of intertwined roots and rhizomes of Posidonia results in the formation of three-dimensional structures named escarpments that constitute a biogenic reef habitat. However, the natural history of seagrass escarpments including their formation processes and their role as habitat for reef fauna and flora remains poorly understood. This research located and characterized Posidonia oceanica escarpments in Menorca (Balearic Islands) and compared structural complexity and fish assemblages among seagrass escarpments, …

Revision Of The Elongatus And Pecki Species Groups Of Anillinus Casey, 1918 (Coleoptera: Carabidae: Trechinae: Anillini), With Four New Species And Notes On Anillinus Turneri Jeannel, 1963, Curt W. Harden, Michael S. Caterino

Insecta Mundi

The small, eyeless beetles of the genus Anillinus Casey (Coleoptera: Carabidae: Trechinae: Anillini) comprise a diverse, ubiquitous, but poorly known component of insect biodiversity in the southeastern United States. Their limited dispersal capabilities make them ideal subjects for biogeography, but taxonomic problems and undescribed species diversity hamper such studies. In this paper, we redescribe four enigmatic species, Anillinus docwatsoni Sokolov and Carlton, Anillinus elongatus Jeannel, Anillinus pecki Giachino, and Anillinus turneri Jeannel, and consider their relationships. The elongatus species group is revised, with descriptions of four newly discovered species, Anillinus arenicollis Harden and Caterino, new species, Anillinus montrex Harden …

Abundance And Habitat Associations Of Bivalves In Mosquito Lagoon, A Preliminary Survey, Mariam Sonbol

Honors Undergraduate Theses

This study investigates the understudied abundance and habitat associations of bivalves in Mosquito Lagoon. Seagrass habitats were found to support the highest diversity of mollusks in earlier surveys (Mikkelsen et al., 1995). Twelve sites, including seagrass-vegetated, unvegetated, and seagrass-restored areas, were sampled in March and May 2024. Habitat characteristics, such as sediment composition and seagrass cover, were analyzed alongside bivalve populations. Across all sites, 6 genera were identified among 44 individuals. Overall abundance and diversity of bivalves collected were low in all sites, and most individuals were juveniles. Sediment characteristics influenced differences in diversity across site types, with restored sites …

Trends And Patterns Of Plant Conservation Research In Borneo: A Review, Rizmoon Nurul Zulkarnaen, Sabri Mohd. Ali, Daniele Cicuzza

ASEAN Journal on Science and Technology for Development

Borneo hosts exceptional plant diversity, including numerous endemic species, but faces significant threats from rapid habitat loss driven by deforestation and land-use changes. This study aimed to analyze research trends and forecast future directions through a bibliometric analysis of Scopus data spanning from 1914 to 2023. The bibliometric analysis included publication outputs, citation patterns, thematic mapping, and keyword co-occurrence. We used VOSviewer to visualize bibliometric networks and the Bibliometrix package in R to perform advanced bibliometric analysis and interactive data exploration. The analysis revealed a continuous rise in publications (998 documents), with the Journal of Ecology identified as the most …