Life Sciences Commons^™

Gmr36a10, Anuradha Venkatakrishnan Chimata, Oorvashi Roy Puli, Amit Singh

DVE Enhancer Sequences Utilized in GMR Line

dve enhancer 49373

• ID - GMR36A10
• Location - 2R: 18116788, 18120701
• Base pairs - 3913

Gmr39h01, Anuradha Venkatakrishnan Chimata, Oorvashi Roy Puli, Amit Singh

DVE Enhancer Sequences Utilized in GMR Line

dve enhancer 50066

• ID - GMR39H01
• Location - 2R: 18153797, 18156108
• Base pairs - 2311

Gmr42e10, Anuradha Venkatakrishnan Chimata, Oorvashi Roy Puli, Amit Singh

DVE Enhancer Sequences Utilized in GMR Line

dve enhancer

• ID - GMR42E10
• Location - 2R: 18133506, 18137474
• Base pairs - 3968

Gmr41c04, Anuradha Venkatakrishnan Chimata, Oorvashi Roy Puli, Amit Singh

DVE Enhancer Sequences Utilized in GMR Line

dve enhancer

• ID - GMR41C04
• Location -2R: 18143594, 18147064
• Base pairs - 3470

Gmr42h01, Anuradha Venkatakrishnan Chimata, Oorvashi Roy Puli, Amit Singh

DVE Enhancer Sequences Utilized in GMR Line

dve enhancer 48150

• ID - GMR42H01
• Location - 2R: 18158419, 18162751
• Base pairs - 4332

Evaluating The Effects Of Bisphenols F And S With Respect To Bisphenol A On Primordial Germ Cell Migration In Zebrafish (Danio Rerio) Embryos Using Immunofluorescence Microscopy, Siti Sarah Safura, George Roba, Edward A. Freeman

Undergraduate External Publications

Primordial Germ Cell (PGC) migration occurs in early embryonic development and is highly conserved across taxa. PGC migration occurs within the first 24 hours post fertilization (hpf) in zebrafish, making the organism an efficient model for observing the migration pathway. Proper PGC migration is necessary for normal gonad development and, in some species, sex determination. Disruption of this process leads to defects in gonad formation and abnormal sex determination and differentiation. Studies show that endocrine-disrupting chemicals such as bisphenol A (BPA) disrupt PGC migration in zebrafish. BPA is an estrogenic compound that has been linked to a variety of human …

Bifurcation Analysis For Prey-Predator Model With Holling Type Iii Functional Response Incorporating Prey Refuge, Lazaar Oussama, Mustapha Serhani

Applications and Applied Mathematics: An International Journal (AAM)

In this paper, we carried out the bifurcation analysis for a Lotka-Volterra prey-predator model with Holling type III functional response incorporating prey refuge protecting a constant proportion of the preys. We study the local bifurcation considering the refuge constant as a parameter. From the center manifold equation, we establish a transcritical bifurcation for the boundary equilibrium. In addition, we prove the occurrence of Hopf bifurcation for the homogeneous equilibrium. Moreover, we give the radius and period of the unique limit cycle for our system

Effects Of Soil Amendments On The Germination And Health Of Panicum Virgatum L. Grown On Soils Polluted By Copper Mining Activities, Brandon Caltrider

Conspectus Borealis

No abstract provided.

The Histoplasma Capsulatum Ddr48 Gene Is Required For Survival Within Macrophages And Resistance To Oxidative Stress And Antifungal Drugs, Logan Blancett

Dissertations

Histoplasma capsulatum(Hc)is a systemic, dimorphic fungal pathogen that affects upwards of 500,000 individuals in the United States annually. Hc grows as a multicellular mold at environmental temperatures; whereas, upon inhalation into a human or other mammalian host, it transforms into a unicellular, pathogenic yeast. The research presented in this dissertation is focused on characterizing the DNA damage-responsive gene HcDDR48. HcDDR48was originally isolated via a subtractive DNA library enriched for transcripts enriched in the mold-phase of Hcgrowth. Upon further analysis we found that HcDDR48is not just expressed in the mold morphotype, but both growth programs …

The Antimicrobial Activity And Cellular Targets Of Plant Derived Aldehydes And Degradable Pro-Antimicrobial Networks In Pseudomonas Aeruginosa, Yetunde Adewunmi

Dissertations

Essential oils (EOs) are plant-derived products that have been long exploited for their antimicrobial activities in medicine, agriculture, and food preservation. EOs represent a promising alternative to conventional antibiotics due to the broad-range antimicrobial activity, low toxicity to human commensal bacteria, and the capacity to kill microorganisms without promoting resistance. Despite the progress in the understanding of the biological activity of EOs, many aspects of their mode of action remain inconclusive. The overarching aim of this work was to address these gaps by studying molecular interactions between antimicrobial plant aldehydes and the opportunistic human pathogen Pseudomonas aeruginosa. We initiated …

On The Weighted Pseudo Almost Periodic Solutions Of Nicholson’S Blowflies Equation, Ramazan Yazgan, Cemil Tunç

Applications and Applied Mathematics: An International Journal (AAM)

This study is concerned with the existence, uniqueness and global exponential stability of weighted pseudo almost periodic solutions of a generalized Nicholson’s blowflies equation with mixed delays. Using some differential inequalities and a fixed point theorem, sufficient conditions were obtained for the existence, uniqueness of at the least a weighted pseudo almost periodic solutions and global exponential stability of this solution. The results of this study are new and complementary to the previous ones can be found in the literature. At the end of the study an example is given to show the accuracy of our results.

Telophase Correction Refines Division Orientation In Stratified Epithelia, K. J. Lough, K. M. Byrd, C. P. Descovich, D. C. Spitzer, A. J. Bergman, Gerard M.J. Beaudoin Iii, L. F. Reichardt, S. E. Williams

Biology Faculty Research

During organogenesis, precise control of spindle orientation balances proliferation and differentiation. In the developing murine epidermis, planar and perpendicular divisions yield symmetric and asymmetric fate outcomes, respectively. Classically, division axis specification involves centrosome migration and spindle rotation, events occurring early in mitosis. Here, we identify a novel orientation mechanism which corrects erroneous anaphase orientations during telophase. The directionality of reorientation correlates with the maintenance or loss of basal contact by the apical daughter. While the scaffolding protein LGN is known to determine initial spindle positioning, we show that LGN also functions during telophase to reorient oblique divisions toward perpendicular. The …

Evolution - #7: Speciation Jigsaw, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

This is a lesson intended to be complementary to the selection simulation. Whereas the simulation was used to develop a conceptual understanding of selection, the readings done here are used to allow students to see the application of their conceptualized understanding to researched examples of selection and speciation.

Gmr35a04, Anuradha Venkatakrishnan Chimata, Oorvashi Roy Puli, Amit Singh

DVE Enhancer Sequences Utilized in GMR Line

dve enhancer

• ID - GMR35A04
• Location - 2R: 18125755, 18128365
• Base pairs - 2610

Gmr41h07, Anuradha Venkatakrishnan Chimata, Oorvashi Roy Puli, Amit Singh

DVE Enhancer Sequences Utilized in GMR Line

dve enhancer 46241

• ID - GMR41H07
• Location - 2R: 18150920, 18154671
• Base pairs - 3751

Gmr41f05, Anuradha Venkatakrishnan Chimata, Oorvashi Roy Puli, Amit Singh

DVE Enhancer Sequences Utilized in GMR Line

dve enhancer 50133

• ID - GMR41F05
• Location - 2R: 18139042, 18142672
• Base pairs - 3630

Gmr40c05, Anuradha Venkatakrishnan Chimata, Oorvashi Roy Puli, Amit Singh

DVE Enhancer Sequences Utilized in GMR Line

dve enhancer 45682

• ID - GMR40C05
• Location - 2R: 18141630, 18144381
• Base pairs - 2751

Dynamics In A Respiratory Control Model With Two Delays, Saroj P. Pradhan, Ferenc Hartung, Janos Turi

Applications and Applied Mathematics: An International Journal (AAM)

In this paper we study ventilation patterns in a set of parameter dependent nonlinear delay equations with two transport delays modeling the human respiratory control system with peripheral and central control loops. We present a convergent numerical scheme suitable to perform simulations when all disturbances and system parameters are known, then we consider the numerical identifiability of various system parameters based on ventilation data. We are especially interested in the identification of the transport delays in the control loops because these parameters are not measurable directly, but they have a strong influence on system stability/instability.

Evaluation Of Antibacterial Activities For Three Commonly Used Antibiotics Produced By Different Manufactures On Female Urinary Tract Infection Uropathogens In Kalar City., Mohammed H. Fatah

Polytechnic Journal

Health professional staff often claims information about trying to differentiate the used antibiotics based on the manufacturers that produce the drug, which may lead to a differentiation in the prescribing of the antibiotics by a physician. Numerous antibiotics produced by different manufactures, under different brands names are available in pharmacies for urinary tract infection (UTI) treatment; this study proceeds to find out and evaluates antibacterial activities of three most used antibiotics, produced by different antibiotic producers on uropathogens in Kalar city. Kirby–Bauer disk diffusion method is employed to assess antibacterial effectiveness of Amikacin (Ak), Levoflaxocilin (Lv) and Nitrofuratoin (Nr) against …

The Prevalence And Relationship Between Helicobacter Pylori Infection And Obesity In The Kurdish Population, Zjwan Housein, Goran Qader Othman, Hawro Dlawar Ismael, Beriwan Abdulqadir Ali

Polytechnic Journal

Background: Globally obesity is a common health condition. A great number of investigators have been studying the association between Helicobacter pylori (H. pylori) infection and obesity. It’s also known that H. pylori causes inflammation within the mucosa of the stomach which is known as gastritis. However, due to the arguable data in the literature, the relationship between H. Pylori and obesity remains debatable and there is no comprehensive proof for the association. Objective: To study the Prevalence and Relationship between Helicobacter pylori infection and Obesity. Methods: In this study 200 subjects were contributed, including 100 positive patients tested with H.pylori …

Performance Evaluation And Water Quality Index Analysis For Qandil Water Treatment Plant, Shuokr Q. Aziz, Imad Omar

Polytechnic Journal

Water treatment plant (WTP) is essential for supplying water with the accepted quality to the consumer. There is a necessity to evaluate the performance of WTP for proper treatment of raw water. The present study aimed to evaluate the performance of Qandil WTP units, Erbil City, Iraq. For assessment the WTP units, water samples were collected from raw water, after clarification, after filtration, and storage tank. Removal efficiencies for the clarifiers, filtration unit, storage tank, and the whole WTP were calculated and presented. Obtained removal efficiencies for the sedimentation unit, filtration unit, after disinfection, and the entire Qandil WTP were …

Heavy Metal Dissolution Mechanisms From Electrical Industrial Sludge, Viraj Gunarathne, Anushka Upamali Rajapaksha, Meththika Vithanage, Nadeesh Adassooriya, Asitha Cooray, Sudantha Liyanage, Bandunee Athapattu, Nishanta Rajakaruna, Avanthi Deshani Igalavithana, Deyi Hou, Daniel S. Alessi, Yong Sik Ok

Biological Sciences

In this paper, we investigate the release of heavy metals from sludge produced from an electrical industry using both organic and inorganic acids. Single and sequential extractions were conducted to assess heavy metals in different phases of the sludge. Metal release from sludge was investigated in the presence of three inorganic acids (nitric, sulfuric, and phosphoric) and three organic acids (acetic, malic, and citric) at concentrations ranging from 0.1 to 2.0 mol L−1. Sequential extraction indicated the presence of Cu primarily in the carbonate fraction, Pb in the residual fraction, and Ni in the FeMn oxide fraction. The cumulative release …

Multidrug Resistance Regulators Mara, Soxs, Rob, And Rama Repress Flagellar Gene Expression And Motility In Salmonella Enterica Serovar Typhimurium, Srinivas Thota, Lon Chubiz

Biology Department Faculty Works

Production of flagella is costly and subject to global multilayered regulation, which is reflected in the hierarchical control of flagellar production in many bacterial species. For Salmonella enterica serovar Typhimurium and its relatives, global regulation of flagellar production primarily occurs through the control of flhDC transcription and mRNA translation. In this study, the roles of the homologous multidrug resistance regulators MarA, SoxS, Rob, and RamA (constituting the mar-sox-rob regulon in S. Typhimurium) in regulating flagellar gene expression were explored. Each of these regulators was found to inhibit flagellar gene expression, production of flagella, and motility. To different degrees, repression via …

Immunogenetic Response Of The Bananaquit In The Face Of Malarial Parasites, Jennifer Antonides, Samarth Mathur, Mekala Sundaram, Robert Ricklefs, J. Dewoody

Biology Department Faculty Works

Background: In the arms race between hosts and parasites, genes involved in the immune response are targets for natural selection. Toll-Like Receptor (TLR) genes play a role in parasite detection as part of the innate immune system whereas Major Histocompatibility Complex (MHC) genes encode proteins that display antigens as part of the vertebrate adaptive immune system. Thus, both gene families are under selection pressure from pathogens. The bananaquit (Coereba flaveola) is a passerine bird that is a common host of avian malarial parasites (Plasmodium sp. and Haemoproteus sp.). We assessed molecular variation of TLR and MHC genes in a wild …

Dual Activities Of Plant Cgmp-Dependent Protein Kinase And Its Roles In Gibberellin Signaling And Salt Stress., Qingwen Shen, Xinqiao Zhan, Pei Yang, Jing Li, Jie Chen, Bing Tang, Xuemin Wang, Xuemin Wang, Yueyun Hong

Biology Department Faculty Works

Cyclic GMP (cGMP) is an important regulator in eukaryotes, and cGMP-dependent protein kinase (PKG) plays a key role in perceiving cellular cGMP in diverse physiological processes in animals. However, the molecular identity, property, and function of PKG in plants remain elusive. In this study, we have identified PKG from plants and characterized its role in mediating the gibberellin (GA) response in rice (Oryza sativa). PKGs from plants are structurally unique with an additional type 2C protein phosphatase domain. Rice PKG possesses both protein kinase and phosphatase activities, and cGMP stimulates its kinase activity but inhibits its phosphatase activity. One of …

Cultivate Winter 2019/2020, Utah State University

Cultivate Magazine

Bi-annual magazine for the College of Agriculture and Applied Sciences.

Migration Tactics Of A Long-Distance Migratory Songbird From Across A Continental Breeding Range, Rosalind Renfrew, Dan Kim, Noah G. Perlut, Michael D. Cadman

Environmental Studies Faculty Publications

Migration strategies in the avian world are often compared at the species level and evaluated relative to general ecology and constraints such as molting and breeding timetables. The advancement of tracking technology provides an opportunity to explore variation in more specific migration tactics within species and their populations as it relates to demographic and environmental factors throughout the annual cycle. We compare migration timing among 4 populations of Bobolink (Dolichonyx oryzivorus) from across the breeding range using data from light-level geolocators. The date of departure from the breeding grounds and the duration of southbound migration differed among breeding …

Effects Of A 12-Week Vigorous Interval Training Intervention On Pro-Inflammatory Markers In Post-Operative Bariatric And Obese Participants, Brittany Rood

Masters Theses, 2010-2019

Increase prevalence of cardiovascular and other chronic diseases linked to inflammation has led to research on pro-inflammatory cytokines, like tumor necrosis factor - alpha (TNF-α) and lipoprotein-associated phospholipase A₂ (Lp-PLA₂), in attempt to define the relationship between chronic disease, inflammation, and obesity. PURPOSE: Examine the effect of twelve weeks of vigorous intensity interval training on pro-inflammatory markers in post-operative bariatric and obese participants. METHODS: 9 post-operative bariatric individuals [1 man, 8 women; Body mass index (BMI) = 34.23 ± 2.54 kg/m²], 12 obese individuals [5 men, 7 women; BMI=35.77 ± 1.67 kg/m^{2 …}

The Effect Of An Acute Bout Of Exercise On Postprandial Metabolic Responses In Younger And Older Adults, Hannah Frick

Masters Theses, 2010-2019

Over 370,000 Americans, primarily between the ages of 60 and 79, die annually as a result of cardiovascular disease caused by physical inactivity and a diet that is calorically dense and high in fat. Current findings in young and middle-aged adults suggest that acute exercise with energy expenditure in excess of 500 kcals, may attenuate the deleterious health effects caused by consuming the typical American meal. Purpose:The purpose of this study was to examine the effects of acute exercise and aging on postprandial lipemia (PPL) and postprandial glycemia (PPG). We hypothesized that aerobic exercise performed prior to the consumption …

Groundwater Chemistry And Salinity Processes In The Myalup Region, Adam M. Lillicrap, Richard J. George Dr

Resource management technical reports

The Myalup region, which incorporates the Myalup Irrigated Agriculture Precinct (MIAP), is located about 100 kilometres south of Perth between the southern end of Lake Clifton and the northern tip of the Leschenault Inlet. It covers 17 800 hectares, with about 2100ha being irrigated. The precinct produces mainly carrots, onions, potatoes and leafy vegetables. In 2016–17, the total value of agricultural production for the MIAP, including on-farm processing and packaging, was more than $120 million.

Irrigation water is mainly from the surficial Myalup aquifer, with limited abstraction from the underlying Leederville aquifer. Average annual rainfall is about 800 millimetres, but …