Life Sciences Commons^™

Sward Structural Characteristics Of Perennial Peanut Genotypes As Affected By Harvest Frequency, Aliedson S. Ferreira, Carlos G. S. Pedreira, Carla M. Marassatto

IGC Proceedings (1977-2023)

Despite the high potential of tropical forage species, herbage production, nutritive value and animal productivity in Brazilian livestock production systems are lower than what can be obtained from both a biological and operational point of view (Pedreira and Mello 2000, Da Silva and Sbrissia 2000). Even with these limitations, the livestock industry is often able to sustain high productivity levels (animal product per hectare) by using good animal genetics and supplementation. Reducing production costs, however, will likely depend on the identification and incorporation of a high-quality forage resource, in terms of both improving diet quality of grazing animals and sustaining …

Morphophysiological Adaptations Of Brachiaria Humidicola Cultivars Under Grazing, Rodrigo A. Barbosa, Pedro N. C. Amaral, André F. Sbrissia, Thiago T. Camara

IGC Proceedings (1977-2023)

Pastures of Brachiaria humidicola are broadly used in Brazil, especially in soils with low fertility and poor drain-age (Valle et al. 2010). Currently, 3 cultivars are commercially available: Tully, Llanero and BRS Tupi (available since 2012). Despite the extensive use of this species, research has focused primarily on aspects related to herbage and animal production, while only a few studies aimed at understanding morphological adaptations of the plants when subjected to grazing and contrasting environmental conditions.

Therefore, the aim of this work was to evaluate some morphological traits of 2 B. humidicola cultivars when continuously stocked during 2 seasons …

Review Of Megacormus Karsch, 1881, With Description Of A New Species (Scorpiones: Euscorpiidae), František Kovařík

Euscorpius

Megacormus franckei sp. n. from Mexico is described and compared with all other species of the genus. Additional information is provided on the morphology, taxonomy and localities of genus Megacormus, mainly through color photographs of live and preserved specimens of all Megacormus species, as well as their habitats. Included is a key for all six known species of the genus Megacormus

Colorants In Cheese Manufacture: Production, Chemistry, Interactions, And Regulation, Prateek Sharma, Annalisa Segat, Alan L. Kelly, Jeremiah J. Sheehan

Nutrition, Dietetics, and Food Sciences Faculty Publications

Colored Cheddar cheeses are prepared by adding an aqueous annatto extract (norbixin) to cheese milk; however, a considerable proportion (∼20%) of such colorant is transferred to whey, which can limit the end use applications of whey products. Different geographical regions have adopted various strategies for handling whey derived from colored cheeses production. For example, in the United States, whey products are treated with oxidizing agents such as hydrogen peroxide and benzoyl peroxide to obtain white and colorless spray‐dried products; however, chemical bleaching of whey is prohibited in Europe and China. Fundamental studies have focused on understanding the interactions between colorants …

Robust Cullin-Ring Ligase Function Is Established By A Multiplicity Of Poly-Ubiquitylation Pathways, Spencer Hill, Kurt Reichermeier, Daniel C. Scott, Lorena Samentar, Jasmin Coulombe-Huntington, Luisa Izzi, Xiaojing Tang, Rebeca Ibarra, Thierry Bertomeu, Annie Moridian, Michael J. Sweredoski, Nora Caberoy, Brenda A. Schulman, Frank Sicheri, Mike Tyers, Gary Kleiger

Life Sciences Faculty Research

The cullin-RING ligases (CRLs) form the major family of E3 ubiquitin ligases. The prototypic CRLs in yeast, called SCF enzymes, employ a single E2 enzyme, Cdc34, to build poly-ubiquitin chains required for degradation. In contrast, six different human E2 and E3 enzyme activities, including Cdc34 orthologs UBE2R1 and UBE2R2, appear to mediate SCF-catalyzed substrate polyubiquitylation in vitro. The combinatorial interplay of these enzymes raises questions about genetic buffering of SCFs in human cells and challenges the dogma that E3s alone determine substrate specificity. To enable the quantitative comparisons of SCF-dependent ubiquitylation reactions with physiological enzyme concentrations, mass spectrometry was employed …

Snowpack Properties Vary In Response To Burn Severity Gradients In Montane Forests, Jordan Maxwell, Samuel B. St. Clair

Aspen Bibliography

Wildfires are altering ecosystems globally as they change in frequency, size, and severity. As wildfires change vegetation structure, they also alter moisture inputs and energy fluxes which influence snowpack and hydrology. In unburned forests, snow has been shown to accumulate more in small clearings or in stands with low to moderate forest densities. Here we investigate whether peak snowpack varies with burn severity or percent overstory tree mortality post-fire in a mid-latitude, subalpine forest. We found that peak snowpack across the burn severity gradients increased 15% in snow-water equivalence (SWE) and 17% in depth for every 20% increase in overstory …

Metagenomic Analysis Of Dental Calculus In Ancient Egyptian Baboons, Claudio Ottoni, Meriam Guellil, Andrew T. Ozga, Anne C. Stone, Oliver Kersten, Barbara Bramanti, Stephanie Porcier, Wim Van Neer

Biology Faculty Articles

Dental calculus, or mineralized plaque, represents a record of ancient biomolecules and food residues. Recently, ancient metagenomics made it possible to unlock the wealth of microbial and dietary information of dental calculus to reconstruct oral microbiomes and lifestyle of humans from the past. Although most studies have so far focused on ancient humans, dental calculus is known to form in a wide range of animals, potentially informing on how human-animal interactions changed the animals’ oral ecology. Here, we characterise the oral microbiome of six ancient Egyptian baboons held in captivity during the late Pharaonic era (9^th–6^th centuries …

Antimicrobial Peptide Identification Using Multi-Scale Convolutional Network, Xin Su, Jing Xu, Yanbin Yin, Xiongwen Quan, Han Zhang

Department of Food Science and Technology: Faculty Publications

Background: Antibiotic resistance has become an increasingly serious problem in the past decades. As an alternative choice, antimicrobial peptides (AMPs) have attracted lots of attention. To identify new AMPs, machine learning methods have been commonly used. More recently, some deep learning methods have also been applied to this problem.

Results: In this paper, we designed a deep learning model to identify AMP sequences. We employed the embedding layer and the multi-scale convolutional network in our model. The multi-scale convolutional network, which contains multiple convolutional layers of varying filter lengths, could utilize all latent features captured by the multiple convolutional layers. …

Chloroviruses, James L. Van Etten, Irina V. Agarkova, David D. Dunigan

Nebraska Center for Virology: Faculty Publications

Chloroviruses are large dsDNA, plaque-forming viruses that infect certain chlorella-like green algae; the algae are normally mutualistic endosymbionts of protists and metazoans and are often referred to as zoochlorellae. The viruses are ubiquitous in inland aqueous environments throughout the world and occasionally single types reach titers of thousands of plaque-forming units per ml of native water. The viruses are icosahedral in shape with a spike structure located at one of the vertices. They contain an internal membrane that is required for infectivity. The viral genomes are 290 to 370 kb in size, which encode up to 16 tRNAs and 330 …

Radioactivity Assessment Of 40k, 238u And 232th In Surface Soil Samples Of Igbokoda, Southwest Of Nigeria, Olusegun Sowole, Kolawole A. Egunjobi

Tanzania Journal of Science

Natural radionuclides are found in soil and are capable of disintegrating leading to the release of ionizing radiations that can have harmful effects on individuals exposed to them most especially when exceeding the recommended global limits of radiological parameters. Assessment of activity  concentrations of 40K, 238U and 232Th in surface soil samples from different locations  at Igbokoda where crude oil exploration was taking place, at Ondo State in Nigeria, had been determined by gamma spectrometry using NaI (TI) detector coupled with a pre-amplifier base connected to a multiple channel analyzer (MCA) which was used to calculate the radiological indicators. 10 …

The Need Of A Structured Tilapia Breeding Program In Tanzania To Enhance Aquaculture Production: A Review, Redempta A. Kajungiro, Levinus L. Mapenzi, Christer S. Nyinondi, Anna Norman Haldén, Aviti J. Mmochi, Mwita Chacha, Matern S.P. Mtolera, Hieromin A. Lamtane, Dirk Jan De Koning

Tanzania Journal of Science

Breeding programs are crucial for boosting productivity and increase sustainability of aquaculture. Over years, Tanzania has witnessed fluctuation in its capture fisheries production from 320,900 to 375, 535 and back to 362,595 metric tonnes in the years 2000, 2005 and 2016, respectively (URT 2016). The declining trend in fish production has made fish supply in the country unstable and conversely, increased the demand for fishes to about 730,000 metric tonnes in 2017. However, the local aquaculture production has not increased accordingly. Tanzania is importing fish mainly from Asia to meet its increased demand. In 2017, a total of 2,055,721 kg …

Phytoremediation Potential Of Four Heavy Metals In Soil By Chromolaena Odorata (L.) King & Robinson At The Phytotoxicity Screening Benchmarks, Gloria O. Omoregie, Beckley Ikhajiagbe, Geoffery O. Anoliefo

Tanzania Journal of Science

The remediative capacity of Chromolaena odorata with respect to heavy metal induced growth-stress was investigated. This was with a view to providing information on the adaptive mechanisms adopted by the test plant during the phytoremediation of selected heavy metals such as copper, manganese, zinc and cadmium. Stems of C. odorata were planted in soils polluted with  Mn, Zn, Cd, and Cu at the ecological screening benchmark (ESB) of 50 mg/kg (Mn and Zn), 4 mg/kg (Cd) and 100 mg/kg (Cu) of metal per kilogram of soil, in varying concentrations of 0 ESB (control), 1 ESB, 3 ESB and 5 ESB. …

Characterization And Domestication Of Wild Edible Mushrooms From Selected Indigenous Forests In Burundi, Vincent Nteziryayo, Donatha D. Tibuhwa, Prosper Kiyuku, Tatien Masharabu

Tanzania Journal of Science

In Burundi, minimum work has been done to comprehensively identify and commercialize high yielding local mushrooms. The previous studies carried out on mushroom cultivation have focused on exotic strains. This is the first study undertaken on domestication of wild edible mushrooms from Burundi indigenous forests. Nine samples were collected from four protected areas and characterized using phenotypic and molecular markers. Germoplasm isolation through tissue culture techniques, spawn production and cultivation studies were also undertaken. Mushroom samples were identified as Pleurotus citrinopileatus, Lentinus squarrosulus, Hypholoma fasciculare, Laetiporus sulfureus, Macrolepiota dolichaula, Trametes polyzona, Amanita zambiana, Lactarius delicious and Amanita verna. Spawn production …

Antimicrobial Activities Of Endophytic Fungi Secondary Metabolites From Moringa Oleifera (Lam), Zuhura N. Mwanga, Esther F. Mvungi, Donatha D Tibuhwa

Tanzania Journal of Science

This study presents the antimicrobial activities of secondary metabolites of endophytic fungi isolated from a medicinal plant Moringa oleifera growing at the University of Dar es Salaam, Tanzania. Two endophytic fungi were identified, Nigrospora sp. from leaves, and Fusarium sp. from roots and seeds. The disc method was used in testing the antimicrobial activities of the crude extracts of endophytic fungi secondary metabolites against four human pathogens, namely, Bacillus substilis, Staphylococcus aureus, Escherichia coli, and Candida albicans. The results revealed that the crude extracts of endophytes secondary metabolites from leaves showed strong antimicrobial activities against two Gram positive bacteria and …

Modelling And Analysis Of A Holling Type Ii Stage Structured Predator-Prey System In The Presence Of Harvesting, Jacob Lyimo, Nyimvua Shaban, Eunice Mureithi, Thadei Sagamiko

Tanzania Journal of Science

The effect of harvesting and predation on a Holling type II stage-structured predator-prey system with assumption that harvesting and predation happen only to mature preys was investigated. Stability of interior point was analysed using Routh Hurwith Criterion. Numerical simulations were carried out. The results show that harvesting and predation have strong negative impacts on population dynamics of stage structured predator-prey system.

Effects Of Seasons And Zonation On Biochemical Contents Of Two Seagrass Species Along Dar Es Salaam Coast, Tanzania, Wamwi M. Mbaga, Esther F. Mvungi

Tanzania Journal of Science

Accumulation and allocation of biochemicals in plants are affected by various factors. The influence of seasons and vertical zonation on biochemical contents of seagrasses Cymodocea rotundata and Thalassia hemprichii from Mjimwema seagrass meadow along the coast of Dar es Salaam were assessed. Samples were collected in 2016 during wet/rainy (April–May) and dry (June–July) seasons. Concentrations of crude protein, soluble carbohydrates, phosphorus, lipid, and proline were determined using standard methods. Significant higher levels of phosphorus, lipid, protein and proline were observed during the dry season than in wet season (p < 0.05). Likewise, seagrass population occurring at the shore zone expressed higher levels of biochemical contents than those found at the subtidal zones. The highest concentration of protein was recorded in Thalassia hemprichii (5.8 mg/g dw)), while those of lipid and carbohydrates (27.1 and 53.1 mg/g dw, respectively) were recorded in Cymodocea rotundata. The two species studied did not vary significantly in their biochemical concentrations in both seasons. Generally it was observed that the concentrations of studied biochemicals were up-regulated during the dry season and varied depending on the locations where the seagrass grow. Thus, both season and zonation played roles in biochemical accumulation in the seagrasses understudy, however not interactively.

Climate Change Increasing Threats On Non-Conserved Mangroves Forests Of Micheweni, Zanzibar–Tanzania, Haji M. Hamad, Islam S.S. Mchenga, Mariam I. Hamisi

Tanzania Journal of Science

Overutilization of mangroves has been reported as the factor for mangrove declining across the globe. However, currently, the global climate change has been claimed to pose significant threats to the survival of mangroves. This study analysed the impacts of climatic variability (sea level rise, temperature and precipitation) to the mangroves of Micheweni (non reserve) and Ngezi-Vumawimbi (nature forest reserve). Multi-disciplinary approach was employed to collect information on community perceptions. Secondary time series data of up to 30 years for temperature, rainfall and sea level rise were collected and analysed. Inquiry results on how local communities perceived climate change showed that …

Mixed Mode Device-To-Device Communication Scheme For Congestion Reduction And Channel Usage Optimization In 5g Cellular Networks, Chiza M. Christophe, Omar F. Hamad, Libe V. Massawe, Abdi T. Abdalla

Tanzania Journal of Science

Device-to-Device (D2D) communication schemes have gained more attention in cellular networks particularly in normalization process of the upcoming 5G networks. They have been investigated in core network offloading, congestion reduction and channel usage optimization.  The two last cases are among the major constraints in current cellular networks and are the main concerns of this paper. The paper presents a mixed mode D2D communication scheme to decentralize data collection between devices and the base station in order to reduce the number of direct connections at the base station of ultra-dense cells characterized by different levels of channel utilizations or target data …

Assessment Of Tree Species Richness, Diversity, Population Structure And Natural Regeneration In Nongeni Forest Reserve In Morogoro Region, Tanzania, David Sylvester Kacholi

Tanzania Journal of Science

This study examined tree species richness, diversity, population structure and regeneration in Nongeni forest reserve, Morogoro, Tanzania. The study deployed plot sampling technique whereby a total of 20 plots of 0.05 ha each were randomly established in the forest. All species and individuals encountered in each plot were counted, identified and DBH measured. A total of 751 individuals/ha representing 24 species belonging to 11 families were recorded. Family Fabaceae was dominant with 9 species. The Shannon-Wiener, Margalef, Simpson’s and Pielou J index were calculated as 2.667, 3.474, 10.58 and 0.839, respectively. The Diplorhynchus condylocarpon (52.18) was the dominant species in …

Preliminary Palynology Of The Karoo Equivalent Tanga Beds, Coastal Tanzania: Insights On Preservation, Age And Depositional Environments, Stephen Peter Magohe

Tanzania Journal of Science

The major challenge to the current understanding of the stratigraphy of the Tanga Basin is scarcity of biostratigraphy age-control data. A number of palynomorphs retrieved from core samples of the Tanga Beds and analysed for palynology are here presented. These include bisaccate pollen grains belonging to the Alisporites-Falcisporites complex, making about 55% average of the total assemblage. The rest of the assemblage comprises other palynomorphs (pollen and spores) and phytoclasts. The miospores documented from the studied samples have poor to fairly good preservation; the organic residues (non-pollen palynomorphs) are excellently preserved. Based on palynologic evidences, and the presence of fossil …

An Investigation Of The Potentials Of 2-[(2-Hydroxyphenyl) Methylidene] Hydrazine-1-Carbothioamide And Its Mn(Ii) And Zn(Ii) Complexes As Antimicrobial Agents, Umar Sani, Musbahu Yahaya, Dailami S. Adam

Tanzania Journal of Science

Antibiotic resistance as a result of misuse, overuse or abuse of drugs is an issue of serious concern world over. The quest for more active and robust antimicrobial agents remains a scientific challenge and requires multimillion-dollar investment in the area of drug design and development. Here in, we report the synthesis and characterisation of a tridentate thiosemicarbazone (2-[(2-hydroxyphenyl)methylidene]hydrazine-1-carbothioamide) (HL) from salicylaldehyde and thiosemicarbazide. Its complexes with Mn(II) and Zn(II) were prepared following similar technique and characterised by melting point, FT-IR, UV –visible spectrophotometry, and elemental analysis. The Mn(II) complex showed paramagnetism with a magnetic moment value of 5.80 BM while …

Synthesis Of Semiochemicals And Related Fine Chemicals From Cashew Nut Shell Liquid, Godfrey Pius, Quintino A Mgani

Tanzania Journal of Science

This paper reports on syntheses of 3-hydroxybenzaldehyde (1) and tetradecanal (2) from the same renewable starting material (cashew nut shell liquid or CNSL), thus demonstrating the potential of the agro-waste cashew nut shells (CNS) as a source of valuable fine and industrial chemicals. The strategy employed in accomplishing the synthesis started with extraction of CNSL followed by isolation of anacardic acid (4) and decarboxylation to give cardanol (5). Compound 5 was hydrogenated followed by protection of phenolic group to give 3-pentadecylphenyl acetate (7). Benzylic oxidation of compound 7 followed by reduction and dehydration resulted into formation of 3-(pentadec-1-en-1-yl)phenol (9). Ozonolysis …

Generation Of Highly Ordered 3d Vivid Monochromatic Coloured Photonic Crystal Films Using Evaporative Induced Technique, Ikhazuagbe H. Ifijen, Esther U. Ikhuoria

Tanzania Journal of Science

Structural coloured crystal films have attracted immense attention because of numerous applications like optical sensing, anti-counterfeiting and photonic fabrics.  Herein, we successfully generated highly periodic three-dimensional (3D) monochromatic structural crystal films with brown, turquoise, blue and yellow colourations from as-synthesized poly(styrene-methyl methacrylate-acrylic acid) or P(St-MMA-AA) colloidal latex via the evaporative induced self-assembly technique. The colours were controlled through the modulation of their crystal lattice by varying their microspheres diameter from 180 nm, 120 nm, and 260 nm to 150 nm. Scanning electron microscope and atomic force microscope (SEM/AFM) analyses showed that the photonic crystal particles readily assembled into an impeccable …

Antioxidant Activity Of Sesame Seed Lignans In Sunflower And Flaxseed Oils, S. Y. Hadeel, S. A. Khalida, M. K. Walsh

Nutrition, Dietetics, and Food Sciences Faculty Publications

This study investigated the antioxidant activity of crude lignan extracts and purified lignans (sesamin, sesamolin, and sesamol) in sunflower and flaxseed oils. Lignan extracts were prepared from roasted sesame seed oil (LRSO) and unroasted sesame seed oil (LUSO). Additionally, the individual lignans were purified from both oils. The crude extracts and purified lignans were added at concentrations of 0.01, 0.02 and 0.03% to the oils and stored at 25 and 65°C over time and peroxide values and thiobarbituric acid values were measured. Each oil showed an increase in oxidation over time, with the samples stored at 65°C exhibiting accelerated oxidation. …

Vegetative Propagation Of Stylosanthes Scabra, Alexandre C. L. De Mello, Adeneide C. Galdino, José C. B. Dubeux Jr., Mércia V. F. Dos Santos, Mário De A. Lira Jr., Felipe M. Saraiva, Mário De A. Lira, Márcio V. Da Cunha

IGC Proceedings (1977-2023)

One way to multiply genetically desirable plants in a more uniform manner is to use vegetative propagation, such as using plant cuttings. This technique multiplies a single plant into several, in an easy low-cost system (Fachinello et al. 2005), so it is useful in plant breeding. This technique may be enhanced through the use of hormonal regulators, with indolebutyric acid (IBA) being most frequently used, because of its stability in hydroalcoholic solution, low sensitivity to biological degradation and good establishment of adventitious roots (Fachinello et al. 1995). In spite of its large-scale use for fruit production, the technique …

Effects Of Two Intake Levels Of Leucaena Leucocephala On Rumen Function Of Sheep, Marcos Barros-Rodríguez, Javier Solorio-Sánchez, Carlos Sandoval-Castro, Athol V. Klieve, Eduardo Briceño-Poot, Luis Ramírez-Avilés, Rafael Rojas-Herrera

IGC Proceedings (1977-2023)

Ruminant production systems based on grass pastures often produce poor animal performance as expressed by growth or reproductive rates. The nutrient imbalance affecting rumen function is due to their low energy and protein intake. The incorporation of leguminous forages such as Leucaena leucocephala, in the diet of ruminants, can stimulate rumen function by providing protein-rich forage (Barros-Rodriguez et al. 2012). This increases the availability of compounds such as ammonia, amino acids and peptides as well as branched short-chain fatty acids, which are produced as a result of degradation of proteins. These substances promote fibre breakdown by acting as ruminal …

Survey Of Pasture Species And Management, Manure Management, Milk Production And Reproduction On Pasture-Based Dairy Farms In Florida And Georgia, Usa, F. Du, K. D. Gay, M. E. Sowerby, Y. C. Newman, C. R. Staples, R. C. Lacy, A. De Vries

IGC Proceedings (1977-2023)

Traditionally, most dairy farms in the south-eastern United States confine cows to barns or on pasture lots year-round and feed stored forages and concentrated feeds (Fontaneli et al. 2005). Often, much of the feed is purchased, however, the cost of purchased feed and fuel has risen rapidly in the last 5 years (NASS 2009). In addition, a significant amount of capital is tied up in buildings, machinery and manure management systems on the farms. For these reasons, many dairy farmers have shown an interest in or started transitioning to pasture-based dairy systems (Ricks and Hardee 2012). The management practices …

Breeding Strategies For Brachiaria Spp. To Improve Productivity–An Ongoing Project, Geovani F. Alves, Ulisses J. De Figueiredo, Antônio D. Pandolfi Filho, Sanzio C. L. Barrios, Cacilda B. Valle

IGC Proceedings (1977-2023)

Two strategies have been used in the breeding of Brachiaria (syn. Urochloa) to produce new cultivars. The first involves exploring the natural variability existing in nature, which is the selection of ecotypes, mostly apomicts, from the diversity in germplasm banks. This strategy proved efficient originally and the cultivars in use in Brazil were derived in this way, but progress with this strategy is limited in the medium to long term.

Dry Matter Intake By Beef Steers On Piatã Palisadegrass (Brachiaria Brizantha Cv. Brs Piatã) Pasture, Denise B. Montagner, Valéria P. B. Euclides, Teresa C. M. Genro, Nayana N. Nantes

IGC Proceedings (1977-2023)

Beef production in Brazil is primarily based on tropical pastures and 85% of these pastures are Brachiaria brizantha cv. Marandu. Such a monoculture could prove disastrous if some pest or disease emerged. With the goal of further diversifying pastures and contributing to the sustainability of the pasture production system, B. brizantha cv. BRS Piatã was released by the Brazilian Agricultural Research Corporation (Embrapa). Little is known about the characteristics of this cultivar in relation to grazing management and plant-animal interactions. Dry matter (DM) intake by grazing animals is influenced by the structural characteristics of tropical grasses (Stobbs 1973, 1975), and …

Agronomic Evaluation Of 324 Intraspecific Hybrids Of Brachiaria Decumbens In Brazil, Rogério G. Mateus, Sanzio C. L. Barrios, Ulisses J. De Figueiredo, Cacilda B. Valle

IGC Proceedings (1977-2023)

Brachiaria decumbens cv. Basilisk is the most planted pasture grass in the tropics owing to its adaptation to poor and acid soils, typical of the tropics, plus good animal performance. This cultivar was responsible for a radical change of scenario in central Brazil in the early 1970s and is the only cultivar available commercially. Efforts to breed this species have been recent, as the successful somatic chromosome duplication of sexually reproducing diploid plants of B. decumbens was accomplished only in 2009 (Simioni and Valle 2009). Subsequently, intraspecific crosses with natural apomictic tetraploid accessions were carried out. Breeding is needed since …