Life Sciences Commons^™

Seed Ecology Of Microlaena Stipoides In Grazing Systems Of South-Eastern Australia, Meredith L. Mitchell, James M. Virgona, Joe Jacobs, David R. Kemp

IGC Proceedings (1977-2023)

Microlaena stipoides var. stipoides (Labill.) R.Br. (Microlaena) is a tufted C3 native Australian perennial grass with a short rhizome that can form dense lawns. Microlaena has a wide geographic distribution throughout southern Australia, particularly in the temperate, high-rainfall tableland areas (> 550 mm AAR) of south-eastern and western Australia where is considered to be important for the grazing industries because of its extended growing season in higher rainfall areas, persistence over many years and persistence through drought. Although Microlaena has an important role in the stability of grazed native pastures, little is known about this grass in grazed communities. This …

Technical Challenges In Evaluating Southern China’S Forage Germplasm Resources, Changjun Bai, Guodao Liu, Yu Zhang, Daogeng Yu

IGC Proceedings (1977-2023)

The present status of the collection, conservation and utilisation of the pasture germplasm in tropical and subtropical zones in China is reviewed. The Tropical Pasture Research Centre (TPRC) of Chinese Academy of Tropical Agricultural Sciences (CATAS) has been engaged in this research since the 1940s. A low temperature gene bank, an in vitro plant library and a nursery station have been established. In total, 5890 indigenous fodder materials belonging to 478 species, 161 genera and 12 families have been surveyed and collected in South China; 1130 exotic materials belonging to 87 species, 42 genera of grasses and legumes have been …

World Interest In Diverse Native Plant Stands, Michael P. Schellenberg, Bili Biligetu, Eric G. Lamb, Jenalee M. Mischkolz

IGC Proceedings (1977-2023)

The objective of this paper was to provide a brief overview of native plant use and development including examples of native plant research being conducted in Canada. There is increasing interest in native plants in various countries. Currently, native plants are used in reclamation, biomass biofuel production, forage seeding, habitat restoration, and water and soil conservation efforts. Many countries have active programs for native plant preservation and new germplasm development, but seed cost, seed quality, and ease of establishment are still challenges for large-scale use. Many improved native plant germplasms have been released in recent years. In some countries, legislation …

The Values Of Warm-Season Native Perennial Grasses Grown For Pasture Or Biofuel In The Southern Great Plains, Usa, James K. Rogers, Bryan Nichols, Jon T. Biermacher, Jagadeesh Mosali

IGC Proceedings (1977-2023)

The Renewable Fuel Standard under the Energy Independence and Security Act of 2007 mandated the production of 136 billion liters of cellulosic biofuel by 2022. Switchgrass (Panicum virgatum) has been identified as a primary feedstock because it is a perennial, produces high yields and is adapted to a wide environmental range. Development of the cellulosic biofuel industry has been slow. A reason for this slow development is lack of available feedstock driven by lack of a developed market. Rather than considering switchgrass only as a dedicated biofuel feedstock, we examined its potential both for grazing and biofuel feedstock. …

New Statistical Method Identifies Cytokines That Distinguish Stool Microbiomes., Dake Yang, Jethro Johnson, Xin Zhou, Elena Deych, Berkley Shands, Blake Hanson, Erica Sodergren, George M. Weinstock, William D Shannon

Faculty Research 2019

Regressing an outcome or dependent variable onto a set of input or independent variables allows the analyst to measure associations between the two so that changes in the outcome can be described by and predicted by changes in the inputs. While there are many ways of doing this in classical statistics, where the dependent variable has certain properties (e.g., a scalar, survival time, count), little progress on regression where the dependent variable are microbiome taxa counts has been made that do not impose extremely strict conditions on the data. In this paper, we propose and apply a new regression model …

Food Availability Modulates Temperature-Dependent Effects On Growth, Reproduction, And Survival In Daphnia Magna, Gustavo S. Betini, Xueqi Wang, Tal Avgar, Matthew M. Guzzo, John M. Fryxell

Wildland Resources Faculty Publications

Reduced body size and accelerated life cycle due to warming are considered major ecological responses to climate change with fitness costs at the individual level. Surprisingly, we know little about how relevant ecological factors can alter these life history trade‐offs and their consequences for individual fitness. Here, we show that food modulates temperature‐dependent effects on body size in the water flea Daphnia magna and interacts with temperature to affect life history parameters. We exposed 412 individuals to a factorial manipulation of food abundance and temperature, tracked each reproductive event, and took daily measurements of body size from each individual. High …

Interactions With Humans Shape Coyote Responses To Hazing, Julie K. Young, Edd Hammill, Stewart W. Breck

Wildland Resources Faculty Publications

Medium and large carnivores coexist with people in urban areas globally, occasionally resulting in negative interactions that prompt questions about how to reduce human-wildlife conflict. Hazing, i.e., scaring wildlife, is frequently promoted as an important non-lethal means for urbanites to reduce conflict but there is limited scientific evidence for its efficacy. We used a population of captive coyotes (Canis latrans) to simulate urban human-coyote interactions and subsequent effects of hazing on coyote behavior. Past experiences with humans significantly affected the number of times a coyote approached a human to necessitate hazing. Coyotes that had been hand fed by …

Effect Of Hospital Volume On Outcomes Of Total Hip Arthroplasty: A Systematic Review And Meta-Analysis, Syed Hamza Mufarrih, Muhammad Owais Abdul Ghani, Russell S. Martins, Nada Qaisar Qureshi, Sayyeda Aleena Mufarrih, Azeem Tariq Malik, Shahryar Noordin

Department of Biological & Biomedical Sciences

Background: A shift in the healthcare system towards the centralization of common yet costly surgeries, such as total hip arthroplasty (THA), to high-volume centers of excellence, is an attempt to control the economic burden while simultaneously enhancing patient outcomes. The "volume-outcome" relationship suggests that hospitals performing more treatment of a given type exhibit better outcomes than hospitals performing fewer. This theory has surfaced as an important factor in determining patient outcomes following THA. We performed a systematic review with meta-analyses to review the available evidence on the impact of hospital volume on outcomes of THA.
Materials and methods: We conducted …

Singv – The Convective-Scale Numerical Weather Prediction System For Singapore, Huang Xiang-Yu, Barker Dale, Webster Stuart, Dipankar Anurag, Lock Adrian, Mittermaier Marion, Sun Xiangming, North, Darvell Rob, Boyd Douglas, Lo Jeff, Liu Jianyu, Macpherson Bruce, Heng Peter, Maycock Adam, Pitcher Laura, Tubbs Robert, Mcmillan Martin, Zhang Sijin, Hagelin Susanna, Porson Aurore, Song Guiting, Beckett Becky, Cheong Wee Kiong, Semple Allison, Gordon Chris

ASEAN Journal on Science and Technology for Development

Extreme rainfall is one of the primary meteorological hazards in Singapore, as well as elsewhere in the deep tropics, and it can lead to significant local flooding. Since 2013, the Meteorological Service Singapore (MSS) and the United Kingdom Met Office (UKMO) have been collaborating to develop a convective-scale Numerical Weather Prediction (NWP) system, called SINGV. Its primary aim is to provide improved weather forecasts for Singapore and the surrounding region, with a focus on improved short-range prediction of localized heavy rainfall. This paper provides an overview of the SINGV development, the latest NWP capabilities at MSS and some key results …

Temporary Shelter Simulation Towards Effectiveness Value Of Ottv And Thermal Comfort, Ayu Dyah Puspa, Prayitno Budi, Hariyadi Agus

ASEAN Journal on Science and Technology for Development

Indonesia is prone to a variety of natural disasters, one of which is earthquakes. Earthquakes are detrimental to human life, causing among other things a loss of shelter. As such, victims of earthquakes need basic assistance in the form of shelter, which the Indonesian government provides in the transition phase of emergency responses. Several innovations in the provision of temporary shelter have arisen in terms of packaging and fast unloading. This research aimed to examine the effective value of OTTV energy (overall thermal transfer value), differences in room temperature, and thermal comfort in existing temporary shelters. OTTV values and thermal …

Analyzing The Characteristics Of Domestic Wastes In Belik River, The Special Region Of Yogyakarta, Indonesia, Suprayogi Slamet, Marfai Muh Aris, Cahyadi Ahmad, Latifah Reviana, Fatchurohman Hendy

ASEAN Journal on Science and Technology for Development

The multiplying number of population in the City of Yogyakarta has resulted in a larger volume of wastes in the region. People living on the riverbanks are unfortunately in the habit of discarding domestic waste directly to the river channel, worsening the already polluted water. This study was intended to analyze the characteristics of the municipal wastewater contaminating Belik River. During the water quality test, a rapid investigation method and laboratory analysis were employed. The sampling in the field was based on river segments and travel time of river water. Based on the laboratory test results, the concentrations of phosphate, …

Association Of Serum Γ-Tocopherol Levels With Mortality: The Multiethnic Cohort Study, Weiwen Chai, Gertraud Maskarinec, Adrian A. Franke, Kristine R. Monroeuniversity Of Southern California, Song-Yi Park, Laurence N. Kolonel, Lynne R. Wilkens, Loïc Le Marchand, Robert V. Cooney

Department of Nutrition and Health Sciences: Faculty Publications

Background/Objectives—γ-Tocopherol has unique properties that protect against nitrogen oxide-mediated cellular damage. To elucidate the potential role of γ-tocopherol in the aging process, we examined the associations of serum γ-tocopherol levels with all-cause and cause-specific mortality.

Subjects/Methods—Among participants in the biorepository subcohort of the Multiethnic Cohort Study, pre-cancer diagnostic serum γ-tocopherol levels were measured in a subset of 3904 men and 4461 women. Of these, 22.7% of men and 13.5% of women died during a mean follow- up time of 9.6±2.6 years. Hazard ratios (HRs) and 95% confidence intervals (95%CIs) for mortality associated with γ-tocopherol were estimated by Cox proportional hazards …

Fenton Oxidation Using Easily Recoverable Catalyst Of Magnetite (Fe3o4) As An Efficient Approach To Treatment Of Rhodamine B Dyeing Effluent In Traditional Fabrics Industry, Prasetyo Imam, Akbar Febry, Prabandari Anindya Widi, Ariyanto Teguh

ASEAN Journal on Science and Technology for Development

A direct release of dye wastewater to a water environment without pre-treatment could cause negative impacts. To solve them, an effective method for degrading wastewater contaminants is needed. In this research, the Fenton reaction using Fe3O4 catalyst for removal of wastewater contaminants taken from a traditional fabrics industry was studied. For this purpose, reaction temperature was varied in the range of 27–90°C. Furthermore, catalyst concentration was also varied in the range of 2–6 g/L solution. The results showed that increasing both temperature and catalyst concentration will increase the performance of the Fenton reaction in degrading wastewater contaminants. The contaminant degradation …

Pi‑Plat: A High‑Resolution Image‑Based 3d Reconstruction Method To Estimate Growth Dynamics Of Rice Inflorescence Traits, Jaspreet Sandhu, Feiyu Zhu, Puneet Paul, Tian Gao, Balpreet K. Dhatt, Yufeng Ge, Paul E. Staswick, Hongfeng Yu, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Background: Recent advances in image-based plant phenotyping have improved our capability to study vegetative stage growth dynamics. However, more complex agronomic traits such as inflorescence architecture (IA), which predominantly contributes to grain crop yield are more challenging to quantify and hence are relatively less explored. Previous efforts to estimate inflorescence-related traits using image-based phenotyping have been limited to destructive end-point measurements. Development of non-destructive inflorescence phenotyping platforms could accelerate the discovery of the phenotypic variation with respect to inflorescence dynamics and mapping of the underlying genes regulating critical yield components.

Results: The major objective of this study is to evaluate …

Xenopus Interferon Complex: Inscribing The Amphibiotic Adaption And Species-Specific Pathogenic Pressure In Vertebrate Evolution?, Yun Tian, Jordan Jennings, Yuanying Gong, Yongming Sang

Agricultural and Environmental Sciences Faculty Research

Several recent studies have revealed previously unknown complexity of the amphibian interferon (IFN) system. Being unique in vertebrate animals, amphibians not only conserve and multiply the fish-like intron-containing IFN genes, but also rapidly evolve amniote-like intronless IFN genes in each tested species. We postulate that the amphibian IFN system confers an essential model to study vertebrate immune evolution in molecular and functional diversity to cope with unprecedented pathophysiological requirement during terrestrial adaption. Studies so far have ascribed a potential role of these IFNs in immune regulation against intracellular pathogens, particularly viruses; however, many knowledge gaps remain elusive. Based on recent …

Genetic Perturbations Of Disease Risk Genes In Mice Capture Transcriptomic Signatures Of Late-Onset Alzheimer's Disease., Ravi S Pandey, Leah C. Graham, Asli Uyar, Christoph Preuss, Gareth R Howell, Gregory W. Carter

Faculty Research 2019

BACKGROUND: New genetic and genomic resources have identified multiple genetic risk factors for late-onset Alzheimer's disease (LOAD) and characterized this common dementia at the molecular level. Experimental studies in model organisms can validate these associations and elucidate the links between specific genetic factors and transcriptomic signatures. Animal models based on LOAD-associated genes can potentially connect common genetic variation with LOAD transcriptomes, thereby providing novel insights into basic biological mechanisms underlying the disease.

METHODS: We performed RNA-Seq on whole brain samples from a panel of six-month-old female mice, each carrying one of the following mutations: homozygous deletions of Apoe and Clu; …

Cognitively Normal Women With Alzheimer’S Disease Proteinopathy Show Relative Preservation Of Memory But Not Of Hippocampal Volume, Jessica Z.K. Caldwell, Jeffrey L. Cummings, Sarah J. Banks, Sebastian Palmqvist, Oskar Hansson

School of Medicine Faculty Research

Background: We examined interactive effects of sex, diagnosis, and cerebrospinal fluid (CSF) amyloid beta/phosphorylated tau ratio (Aβ/P-tau) on verbal memory and hippocampal volumes. Methods: We assessed 682 participants (350 women) from BioFINDER (250 cognitively normal [CN]; and 432 symptomatic: 186 subjective cognitive decline [SCD], 246 mild cognitive impairment [MCI]). General linear models evaluated effects of Alzheimer’s disease (AD) proteinopathy (CSF Aß/p-tau ratio), diagnosis, and sex on verbal memory (ADAS-cog 10-word recall), semantic fluency (animal naming fluency), visuospatial skills (cube copy), processing speed/attention functions (Symbol Digit Modalities Test and Trail Making Part A), and hippocampal volumes. Results: Amyloid-positive (Aβ/P-tau+) CN women …

Grasses Endemic To The Conterminous United States, James P. Smith Jr

Botanical Studies

No abstract provided.

The Use Of Functional Traits To Identify Grasses And Fodder Shrubs For Domestication To Suit A Changing Climate, Meredith L. Mitchell, R. D. B. Whalley, Hayley C. Norman

IGC Proceedings (1977-2023)

There is uncertainty about future climatic predictions; however there is little doubt amongst experts that the future will be warmer. Climate change and the associated elevation in atmospheric CO₂ level and temperatures will provide novel challenges and potential opportunities for cultivated plant species. Plant breeding and domestication can contributed to improvements in both yield and quality of grasses and fodder shrubs. A range of key functional traits is required to cope with this changing climate. The main challenges that are discussed are new pests and pathogens; changes in the pattern of nutrient supply and forage quality; challenge associated with …

Development Of New, High Yielding Tropical Grass Varieties For Increasing Productivity Of Semi-Arid Grasslands In India, Ajoy K. Roy, D. R. Malaviya, P. Kaushal, Sunil Kumar, S. Ahmed

IGC Proceedings (1977-2023)

Indian agriculture has traditionally been a mixed farming system since ancient times with integration of arable crops and livestock. It provides employment and livelihood to 70% of the rural population. Livestock are predominantly cattle and small ruminants that graze extensively on rangelands/pasturelands and common property resources (CPRs). CPRs occupy approximately 54 million ha area including permanent pastures in the alpine and temperate parts as well as seasonal grazing lands and wastelands. The productivity and carrying capacity of tropical degraded grasslands is very low, the average carrying capacity being 1.0, 0.7, 0.7 Adult Cattle Unit (ACU)/ha in semi-arid, arid and hill …

Genetic Diversity And Relationships In Cocksfoot By Molecular Markers, Bing Zeng, Fu-Yuan Zuo, Xinquan Zhang, Liang Huan

IGC Proceedings (1977-2023)

Cocksfoot (Dactylis glomerata L.) originated from the Northern Hemisphere, including Eurasia and North Africa. It is widely distributed in temperate climates and has been widely used in the world more than 100 years, especially in North America, Europe and Japan. Genetic variability of cocksfoot had been detected by RAPD (Kölliker et al. 1999), and the correlation between genome size of natural populations of cocksfoot and location altitude has been analyzed by AFLP (Reeves et al. 1999). To date, information on the genetic diversity of cocksfoot at the molecular level is still scarce, This study is the first to …

Methods Of Ryegrass Establishment (Lolium Multiflorum Lam.) Affecting Optimal Sward Height To Maximize The Intake Rate, Delma Fabíola Ferreira Da Silva, Lidiane Fonseca, Carolina Bremm, Anibal De Moraes, Alda L. G. Monteiro, Hélio Mayer, Thiago Marzarotto, Paulo C. De F. Carvalho

IGC Proceedings (1977-2023)

In integrated systems it is common to use the no-tillage method. The adoption of this method improves the system's sustainability (Laurent et al. 2011). It is necessary to understand the effects of the integrated systems on sward structure and its consequences in the grazing process and in animal production. The intake rate of grazing animals is primarily responsible for the animal performance (Coleman 2006), which short-termdepends mainly on sward structure (Laca and Demment 2006). The sward height has great influence on the animal decision on where to take the next bite (Mcgilloway et al. 1999). The hypothesis of …

Timely Autumn Seeding Of Annual Ryegrass Is Essential For High Yield, Jennifer M. Johnson, Edzard Van Santen

IGC Proceedings (1977-2023)

The use of annual ryegrass (Lolium multiflorum Lam.) as a winter cover crop and grazing option in the Southeast Unit-ed States has become a common practice. Recent research evaluating the effects of seeding time on seed yield in Canada determined autumn seeding produces the most desired results relative spring seeding, but indicated that varied autumn seeding rates would further their findings (Coulman et al. 2013). A University of Arkansas study utilized cool season annuals, wheat (Triticum aestivum L.) and annual ryegrass, to evaluate animal performance and seeding date effects. This research indicated that seeding cool-season annuals in …

Global Illumina Sequencing And The Development Of Est-Ssr Markers In Alfalfa, Zhipeng Liu, Yanrong Wang

IGC Proceedings (1977-2023)

RNA-Seq, a massively parallel sequencing method for transcriptome analysis, only analyzes transcribed portions of the genome. Recently, RNA-Seq has provided an opportunity to expand the identification of alfalfa (Medicago sativa) genes. Using Illumina sequencing, 124,025 unique sequences from MSGI 1.0 have been identified from the elongating stem and post-elongation stem internodes of two alfalfa genotypes (Yang et al. 2011). Using 454 sequencing, 54,216 unique sequences were obtained from the roots and shoots of two alfalfa genotypes (Han et al., 2011). In addition, Illumina sequencing of old and young stems of 27 alfalfa genotypes led to the …

Transferring Simple Sequence Repeat Molecular Markers From A Model To Cultivated Lotus Species: Genetic Diversity In An Association Mapping Population Of Lotus Tenuis, Luis Inostroza, Hernán Acuña

IGC Proceedings (1977-2023)

Lotus tenuis is a diploid (2n=12), out-crossing, self-incompatible, perennial species originating from the Mediterranean basin, North Africa, and Asia. On the other hand, Lotus japonicus has been selected as a model species be-cause of its simple genetic conditions (diploid, self-crossing, and short ontogenetic cycle). Lotus japonicus is currently the focus of large multinational genome projects that periodically release outstanding products; these include sequencing of genomic DNA on a large scale, generating molecular markers, and constructing high-density linkage maps (Szczyglowski and Stougaard 2008). Furthermore, comparative genetic studies have demonstrated conserva-tion of genome structure among model and crop species; this suggests that …

New Herbaceous Perennial Legumes In Dryland Mediterranean Agroecosystems: Pasture Persistence And Productivity, Viviana Barahona, Carlos Ovalle, Alejandro Del Pozo, Soledad Espinoza, Fernando Squella, Fernando Fernandez, Macarena Gerding

IGC Proceedings (1977-2023)

One of the strategies to improve pasture and crop productivity in the Mediterranean zone of Chile has been the introduction and use of annual legumes (del Pozo and Ovalle 2009; Ovalle et al. 2010). The growth rate of annual legumes is low during autumn and winter, and the distribution of the biomass production is mainly concentrated in spring when temperatures are moderate and soil water is available. It is hypothesized that perennial deep-rooted legumes can play a key role in improving soil physicochemical characteristics as well as water-use efficiency (Cocks 2001; Dear et al. 2003; Ward 2006). In …

Relationship Between Genetic Origin And Characterization Of Varieties Of Lotus Corniculatus L. In Uruguay, María José Cuitiño, Mónica Rebuffo

IGC Proceedings (1977-2023)

Changes in cropping systems have moved pastures into more restrictive environments, affecting the traditional seed crop harvest of Lotus corniculatus L. in Uruguay. This traditional harvest may have generated landraces (LR) with differences in dry matter and seed production and/or adaptation. The potential seed yield of L. corniculatus and that obtained by farmers is very different (Garcia et al, 1991). Several factors impact on achieving potential seed yield and it is possible that these constraints maybe overcome via breeding. The objective of this study was to identify LR’s with more seed production and/or persist-ence, compared with parental cultivars and …

Characterization Of Landraces Of Lotus Corniculatus L. In Uruguay, Mónica Rebuffo, María José Cuitiño

IGC Proceedings (1977-2023)

Lotus corniculatus, the main cultivated forage legume in Uruguay since the sixties, is well adapted to soils with low P availability and pH where alfalfa has restricted growth. Local landraces are potential sources of valuable genes that could benefit the farming community. Traditionally farmers harvested their own seed through many generations in the southwest (Garcia et al. 1991), where sown pastures were rotated with cereals. These local landraces were conserved in situ in the past, but ley-farming systems have been substituted for continuous soybean cropping in recent years. INIA collected 110 samples for ex situ conservation with proper …

Selection For Improved Saccharification Efficiency In Alfalfa Stems Assessed By Enzyme-Released Glucose, Annick Bertrand, Yves Castonguay, Réal Michaud, Marc-Olivier Duceppe

IGC Proceedings (1977-2023)

Alfalfa (Medicago sativa L.) has a high potential for sustainable bioethanol production, particularly because of its low reliance on N fertilizer (Samac et al. 2006). Genetic improvement for the accumulation of readily fermentable non-structural carbohydrates (NSC) and the saccharification of structural carbohydrate (SC) could significantly increase ethanol conversion rate. Genetic gains for these traits are tributary to the availability of screening techniques for the precise identification of superior genotypes with increased potential for the production of fermentable carbohydrates.

When assessing the genetic variability of parameters linked to cellulosic ethanol production (concentrations of NSC and SC), our results showed …

Three Dimensional (3d) Reconstruction Of Subterranean Clover, Helen G. Daily, Jianming Guo, Xavier R. R. Sirault

IGC Proceedings (1977-2023)

Three dimensional (3D) plant reconstructions, extended to four dimensions with the use of time series and accompanied by visual modelling, is being used for a number of purposes including the estimation of biovolume and as the basis for functional structural plant modelling (FSPM). This has been successfully applied to crop species such as cotton (Paproki et al. 2012). Measuring the growth pattern and arrangement of a pasture sward is a difficult task but can be used as an indirect measure of other variables of interest, such as growth rate, light interception, nutritional quality, herbivore intake, etc. (Laca and …