Life Sciences Commons^™

Respon Tanaman Kelapa Sawit Terhadap Bakteri Pelarut Fosfat Dan Bakteri Penambat Nitrogen Di Pembibitan Awal (Pre Nursery), Intan Ratna Dewi Anjarsari, Mochamad Arief Soleh, Erni Suminar

Jurnal Kultivasi

The objective of this experiment was to study response of oil palm seedlings in prenursery to Phosfat solubilizing bacteria and nitogen fixaxing bacteria. This experiment was conducted at experimental field, Jatinangor, KabupatenSumedang from April until October 2012. Experimental field located at altitude 753 m above sea level with rainfall C type according to the classification of Schmidt and Fergusson. Experimental design was the simple pattern of Randomized Design Group (RDG), consisting of twelve treatment and repeated three times. The treatment were Without inoculation; Azotobacter 20 mL/plant; BPF 20 mL/plant; 10 mL/plant BPF + 10 ml/plant Azotobacter; 10 mL/plant BPF + …

Elucidating The Factors That Modulate The Distribution Of Avian Haemosporida Parasites Across A Community Of Hosts, Matthew Christopher Ikaika Medeiros

Dissertations

Parasites are heterogeneously distributed across host species, host populations, and host individuals within populations. A primary aim of infectious disease ecology seeks to uncover the factors that drive this heterogeneity. At a fundamental level, host infection is determined by exposure and susceptibility to a pathogen. My dissertation explores how evolutionary and ecological forces associated with these fundamental determinates of infection shape variation in parasite host breadth and host infection status. Here, I focus on a community of vector-borne avian Haemosporida parasites among suburban birds of Chicago, IL. These parasites exhibit strong variation in their distribution among available hosts, and provide …

Exploring The Local And Regional Effects Of Plant Diversity On Plant Herbivore Interactions, Diego Salazar

Dissertations

The study of biological diversity and its effects on ecosystem functioning and species interactions has always been a fundamental part of biology. The accelerating loss of species in conjunction with an increasing change in the natural environment has underlined the importance of the role that biodiversity has on the evolutionary and ecological dynamics of natural systems. In this dissertation I explore the effect of local and regional patterns of plant diversity in plant-herbivore interactions. Furthermore, this work goes beyond the classical concepts of taxonomical diversity and investigates the role of phylogenetic and chemical diversity on plant-herbivore interactions. In chapter one …

Genetic Sex Conditions And Redefining Sex, Jayce O'Shields

Student Scholarship

Western culture has a tendency to value binaries and discreet categories that separate its social structure and provide a sense of order and organization. The value placed on binaries and categories may be advantageous in some aspects, but when it starts to infringe upon the legal and medical rights of individuals not easily placed in either binary category, it can become less advantageous.

A baby is usually classified as either male or female shortly after birth, and all future legal, social, and economic actions and rights of that individual are more or less decided according to this classification. A problem …

Vibrio Cholerae As A Predator: Lessons From Evolutionary Principles, Stefan Pukatzki, Daniele Provenzano

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Diarrheal diseases are the second-most common cause of death among children under the age of five worldwide. Cholera alone, caused by the marine bacterium Vibrio cholerae, is responsible for several million cases and over 120,000 deaths annually. When contaminated water is ingested, V. cholerae passes through the gastric acid barrier, penetrates the mucin layer of the small intestine, and adheres to the underlying epithelial lining. V. cholerae multiplies rapidly, secretes cholera toxin, and exits the human host in vast numbers during diarrheal purges. How V. cholerae rapidly reaches such high numbers during each purge is not clearly understood. We propose …

The Response Of Naive Channel Catfish To Chemical Cues Associated With Predation, Marinda Coulter

Theses and Dissertations

The chemosensory abilities of fishes, are important in order to understand how prey can perceive and avoid predators. Predator-naïve Channel catfish were exposed to four extracts over eight sessions (naïve bass water (NBW), bass that were fed catfish water (BFCW), catfish skin extract (CS), and naïve bass water paired with catfish skin extract (CO)) to determine whether they have an innate predator response to potential chemical cues indicating possible predation risk. Movement was quantified as grid squares crossed, directional changes, and tail beats. Response increased during the first minute following stimulus injection and decreased during the second minute. Channel catfish …

Differential Actions Of Orexin Receptors In Brainstem Cholinergic And Monoaminergic Neurons Revealed By Receptor Knockouts: Implications For Orexinergic Signaling In Arousal And Narcolepsy, Kristi Kohlmeier, Christopher Tyler, Mike Kalogiannis, Masaru Ishibashi, Iryna Gumenchuk, Masashi Yanagisawa, Christopher S. Leonard

NYMC Faculty Publications

Orexin neuropeptides influence multiple homeostatic functions and play an essential role in the expression of normal sleep-wake behavior. While their two known receptors (OX1 and OX2) are targets for novel pharmacotherapeutics, the actions mediated by each receptor remain largely unexplored. Using brain slices from mice constitutively lacking either receptor, we used whole-cell and Ca(2+) imaging methods to delineate the cellular actions of each receptor within cholinergic [laterodorsal tegmental nucleus (LDT)] and monoaminergic [dorsal raphe (DR) and locus coeruleus (LC)] brainstem nuclei-where orexins promote arousal and suppress REM sleep. In slices from OX(-/-) 2 mice, orexin-A (300 nM) elicited wild-type responses …

Smokejumper Obituary: Kelly, Michael P. (Mccall 2012), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

The Acute Effects Of Whole-Body Vibration Training On Passive And Dynamic Flexibility In Gymnasts, Caisa Nicole Brooks

Theses and Dissertations

Gymnasts must attain extreme ranges of flexibility to execute performance requirements, thus effective stretching proves vital to advancement in the sport. This study examined the acute effects of whole-body vibration (WBV) on passive and dynamic flexibility in young, female gymnasts. Participants (n = 27, Junior Olympic levels 5-10) served as their own control. Measurements of passive and dynamic flexibility were obtained using the TOPS forward split testing method to examine passive flexibility and dynamic flexibility was measured via split jumps that were analyzed with video and Dartfish software. According to randomized order, all participants completed a stretching protocol either with …

Pharmacokinetics Of Dexamethasone Delivered Via Iontophoresis, Justin Holbrook Rigby

Theses and Dissertations

Study Design: Controlled laboratory study. Objectives: To determine the time course of dexamethasone sodium phosphate (Dex-P) iontophoresis delivery to underlying tissues using microdialysis. Background: The efficacy of iontophoresis at delivering Dex-P through the skin is unknown in humans because of the lack of minimally invasive measurement techniques. Methods: Sixty-four healthy male participants (age = 24.4 ± 3.3 yrs, height = 71.8 ± 2.5 in, weight = 181.8 ± 26.1 lbs) were randomly assigned into one of six groups: 1) 1 mA current, 1 mm probes depth ; 2) 1 mA current, 4 mm probes depth; 3) 2 mA current, 1 …

Mechanisms Of Neuroprotection Against Retinal Ganglion Cell Loss Using An In Vivo Glaucoma Model, Kevin Heinze

Honors Theses

Glaucoma is an incurable ocular disease characterized by apoptotic cell death and degeneration of retinal ganglion cells (RGCs), and is one of the leading causes of blindness worldwide (Quigley and Broman, 2006; Quigley et al., 1995). While current treatments are effective at slowing vision loss, glaucoma’s multifactorial etiology has made it difficult for researchers to identify a target for treatment that will permanently halt RGC degeneration. Previous studies have proposed a glutamate-induced excitotoxic mechanism of RGC death in glaucoma, and neuroprotective agents have been investigated to prevent this effect. One agent, acetylcholine, has been shown to initiate pro-survival signaling cascades …

Obm Thesis Project: Composing An Undergraduate Thesis Manual, William Strong

Honors Theses

The Behavioral Research Supervisory System (BRSS) is a class designed to assist undergraduate and master students in completing a thesis project in a timely manner. Prior to beginning this project, undergraduate students were not utilizing the thesis manual for the class effectively and master students did not have an effective tool to grade the quality of their undergraduate thesis students’ work. Therefore, the ultimate goal of this thesis project is to create a better manual for undergraduate students to reference while working on their thesis projects and to provide a systematic grading system for their graduate student supervisors. A pre-manual …

Rapid Test For Determining The Presence Of Oleic Acid, Serena Chambers

Honors Theses

Food allergies have a large impact on the lives of millions of people worldwide. More recently, the allergic reaction to peanuts and peanut-related products has become a popular issue since the reaction they cause is one of the most severe. Food related allergies claim roughly 250 lives each year in the United States alone, with peanut related allergies accounting for almost 60% percent of those deaths. This research is designed to produce a rapid test effective in determining the presence of oleic acid, an allergen found in peanut oil. Oleic acid makes up over 50% percent of the peanut oil …

Who's Your Daddy? A Study Of Extra-Pair Copulation And Mating Behaviors Of Protonotaria Citrea, Morton Catherine Heidrich

Theses and Dissertations

Mating behavior has a profound impact on reproductive success and the resulting genetic structure of offspring. Extra-pair copulation is a widely observed behavior within avian species. This study explored the genetic effects of mating behaviors of Prothonotary warblers, Protonotaria citrea (Parulidae), using co-dominant microsatellite markers. Prothonotary warblers are migratory songbirds that build nests in cavities, commonly found in wetland habitats. A set of artificial nest boxes were initiated by Dr Robert Reilly in 2002 in Dutch Gap, Chesterfield County Virginia, USA, a tidal tributary off the James River. From this population, 28 nest boxes were surveyed yielding 47 adults and …

Development Of A Heat And Mass Transfer Model To Simulate The Conventional Chilling Of A Beef Carcass, Ross Gilsenan, Niall O'Murchu, Graham Fahey, Joseph Christopher Hannon, Garrett Keane

Other resources

Development of a Heat and Mass Transfer Model to Simulate the Conventional Chilling of a Beef Carcass

Ross Gilsenan¹, Niall O’Murchú¹, Graham Fahey¹, Joe Hannon^1,3, Garrett Keane²

¹School of Mechanical Engineering and Design, DIT

²School of Civil Engineering, DIT

³School of Biosystems Engineering, UCD

A coupled heat and mass transfer model was developed to simulate the chilling of a beef carcass post slaughter. The methodology followed by Mallikarjunan, P., & Mittal, G. (1994) was adopted in this study. The beef carcass was represented by five two dimensional horizontal …

Shifting Environmental Controls On Ch4 Fluxes In A Sub-Boreal Peatland, Thomas G. Pypker, P. A. Moore, John A. Hribljan, Rodney Chimner

Michigan Tech Publications, Part 1

We monitored CO₂ and CH₄ fluxes using eddy covariance from 19 May to 27 September 2011 in a poor fen located in northern Michigan. The objectives of this paper are to: (1) quantify the flux of CH₄ from a sub-boreal peatland, and (2) determine which abiotic and biotic factors were the most correlated to the flux of CH₄ over the measurement period. Net daily CH₄ fluxes increased from 70 mg CH₄ m⁻² d⁻¹ to 220 mg CH₄ m⁻² d⁻¹ from mid May to mid July. After July, CH_{4 …}

Field Effects And Ictal Synchronization: Insights From In Homine Observations, Shennan A. Weiss, Guy Mckhann Jr., Robert Goodman, Ronald G. Emerson, Andrew Trevelyan, Marom Bikson, Catherine A. Schevon

Publications and Research

It has been well established in animal models that electrical fields generated during inter-ictal and ictal discharges are strong enough in intensity to influence action potential firing threshold and synchronization. We discuss recently published data from microelectrode array recordings of human neocortical seizures and speculate about the possible role of field effects in neuronal synchronization. We have identified two distinct seizure territories that cannot be easily distinguished by traditional EEG analysis. The ictal core exhibits synchronized neuronal burst firing, while the surrounding ictal penumbra exhibits asynchronous and relatively sparse neuronal activity. In the ictal core large amplitude rhythmic ictal discharges …

Transformation Of Stimulus Correlations By The Retina, Kristina D. Simmons, Jason Prentice, Gašper Tkačik, Jan Homann, Heather K. Yee, Stephanie E. Palmer, Philip C. Nelson, Vijay Balasubramanian

Publications and Research

Redundancies and correlations in the responses of sensory neurons may seem to waste neural resources, but they can also carry cues about structured stimuli and may help the brain to correct for response errors. To investigate the effect of stimulus structure on redundancy in retina, we measured simultaneous responses from populations of retinal ganglion cells presented with natural and artificial stimuli that varied greatly in correlation structure; these stimuli and recordings are publicly available online. Responding to spatio-temporally structured stimuli such as natural movies, pairs of ganglion cells were modestly more correlated than in response to white noise checkerboards, but …

Impact Of Noise On Molecular Network Inference, Radhakrishnan Nagarajan, Marco Scutari

Biostatistics Faculty Publications

Molecular entities work in concert as a system and mediate phenotypic outcomes and disease states. There has been recent interest in modelling the associations between molecular entities from their observed expression profiles as networks using a battery of algorithms. These networks have proven to be useful abstractions of the underlying pathways and signalling mechanisms. Noise is ubiquitous in molecular data and can have a pronounced effect on the inferred network. Noise can be an outcome of several factors including: inherent stochastic mechanisms at the molecular level, variation in the abundance of molecules, heterogeneity, sensitivity of the biological assay or measurement …

Making Chlamydomonas Reinhardtii A Better Model Organism: Tackling The Inefficiency Of Nuclear Transgene Expression And Improving Methods For The Generation And Characterization Of Insertional Mutant Libraries, Thomas M. Plucinak

Department of Biochemistry: Dissertations, Theses, and Student Research

The green algal species Chlamydomonas reinhardtii possesses many beneficial features that have made it a useful model organism for many decades. Many types of experimentation however are difficult to conduct with this organism due to the relative under-development of genetic tools available for use. Tasks such as transgene expression, overexpression of proteins of interest (POIs) or site specific genomic modification that are routine in other more facile microbial model organisms such as Escherichia coli and yeast are difficult to accomplish in C. reinhardtii. The second chapter of this thesis describes the development of a novel nuclear transgene expression system …

Studies On The Regulation Of Fgf21 Gene Expression By (R)-Α-Lipoic Acid: Mechanistic Insight Into The Lipid Lowering Properties Of A Dithiol Dietary Molecule, Xiaohua Yi

Department of Nutrition and Health Sciences: Dissertations, Theses, and Student Research

Controlling blood lipids is a major public health challenge of our time. The pleiotropic hormone-like polypeptide fibroblast growth factor 21 (FGF21) was recently recognized as a potent modulator of lipid and glucose metabolism and a promising treatment strategy for obesity related metabolic disorders, including dyslipidemia. A cost effective and practical alternative to the administration of recombinant FGF21 is to stimulate endogenous FGF21 production through diet. Our research identified (R)-a-lipoic acid (LA), a naturally occurring enzyme cofactor and dietary molecule found in green leafy vegetable and red meat, as an inducer of FGF21 expression. LA stimulated FGF21 production, demonstrated by a …

Analgesic Tolerance Of Opioid Agonists In Mutant Mu-Opioid Receptors Expressed In Sensory Neurons Following Intrathecal Plasmid Gene Delivery, Guangwen Li, Fei Ma, Yanping Gu, Li-Yen Mae Huang

Physiology Faculty Publications

Background: Phosphorylation sites in the C-terminus of mu-opioid receptors (MORs) are known to play critical roles in the receptor functions. Our understanding of their participation in opioid analgesia is mostly based on studies of opioid effects on mutant receptors expressed in in vitro preparations, including cell lines, isolated neurons and brain slices. The behavioral consequences of the mutation have not been fully explored due to the complexity in studies of mutant receptors in vivo. To facilitate the determination of the contribution of phosphorylation sites in MOR to opioid-induced analgesic behaviors, we expressed mutant and wild-type human MORs (hMORs) in sensory …

"Effects Of A Specific Acetylcholine Receptor Agonist In A Rat Glaucoma Model", Maha Alfaidi

Honors Theses

PURPOSE: This study was designed to investigate the neuroprotective effects of a specific nicotinic ACh agonist, PNU-282987, on the loss of retinal ganglion cells (RGCs) in a rat glaucoma model. A time-dependent study using 2 mM PNU-282987 was performed to determine the neuroprotective effect in the vertebrate retina.

METHODS: Hypertonic saline solution (2M NaCl) was injected into the episcleral vein of the rat’s eye to reduce the numbers of RGCs and mimic the effect of glaucoma. In one set of studies, PNU-282987 was applied to the right eye of each experimental animal as eye drops in combination with the NaCl …

Attributing Meaning To Online Social Network Analysis For Tailored Socio-Behavioral Support Systems, Sahiti Myneni

Dissertations and Theses (Open Access)

Ubiquitous online social networks provide us with a unique opportunity to deliver scalable interventions for the support of lifestyle modifications in order to change behaviors that predispose toward cancer and other diseases. At the same time these networks act as rich data sources to inform our understanding of end-user needs. Traditionally, social network analysis is based on communication frequency among members. In this work, I introduce communication content as a complementary frame for studying these networks.

QuitNet, an online social network developed to provide smoking cessation support is considered for analysis. Qualitative coding, automated content analysis, and network analysis were …

Biotinylation Of The C-Myc Promoter Binding Protein Mbp-1 Decreases C-Myc And Cox-2 Expression In Mammary Carcinoma Mcf-7 Cells, Jie Zhou

Department of Nutrition and Health Sciences: Dissertations, Theses, and Student Research

Biotin feeding in a Balb/c mouse model of breast cancer suggest that the tumor load is ~100% greater in biotin-deficient mice compared with biotin-sufficient controls, and that the increase is associated with metastasis rather than new tumors. The oncogenes c-Myc and COX-2 are implicated in cancer metastasis, and their expressions are repressed by binding of MBP-1 to the promoter. Mass spectrometry studies, designed to discover novel biotin-containing proteins, suggest that lysine residues K10 and K12 in the c-Myc promoter binding protein (MBP-1) contains covalently bound biotin (MBP-1bio). We hypothesized that biotinylation of MBP-1 increases the binding of MBP-1 to the …

The Cost Of Affordable Food, Candice L. Cobuzzi

SURGE

When someone puts a piece of food in front of me, I don’t just see a piece of food.

Instead, I see an innocent cow being cornered by a forklift and slaughtered, its limp, moist tissue hung on a long conveyer belt with hundreds of others.

I see hundreds of chemically-injected chickens packed into a dark barn with no hope of seeing sunlight in their lifetime.

I see immigrants pulled from their houses like criminals, taken away from the lives they’ve spent years building for themselves and their families, working for the same food company that courted them into the …

Metabolic Remodeling And Mitochondrial Dysfunction In Maladaptive Right Ventricular Hypertrophy Secondary To Pulmonary Arterial Hypertension, Jose Gomez-Arroyo

Theses and Dissertations

Right ventricular dysfunction is the most frequent cause of death in patients with pulmonary arterial hypertension. Although abnormal energy substrate use has been implicated in the development of chronic left heart failure, data describing such metabolic remodeling in failing right ventricular tissue remain incomplete. In the present dissertation we sought to characterize metabolic gene expression changes and mitochondrial dysfunction in functional and dysfunctional RV hypertrophy. Two different rat models of RV hypertrophy were studied. The model of right ventricular failure (SU5416/hypoxia) exhibited a significantly decreased gene expression of peroxisome proliferator-activated receptor- coactivator-1α, peroxisome proliferator- activated receptor-α and estrogen-related receptor-α. The …

Oregon Wine Board Meeting Minutes December 3, 2013, Oregon Wine Board

Oregon Wine Board Documents

These meeting minutes list individuals in attendance and missing from the December 3, 2013 Oregon Wine Board (OWB) meeting, held at the Aquariva Restaurant, in Portland, Oregon. Reports were given by the symposium, executive, and finance Committees, and attendees engaged in a lengthy discussion on the strategic review of export activity. The meeting concluded with discussion of the 2013 harvest report. The meeting lasted 2 hours 32 minutes.

U.S. Drought Monitor, December 3, 2013, Michael J. Brewer

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 3, 2013 (12/3/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

Geo 585 Field Methods: Edge Effects [In The Gordon Natural Area], Matthew Long, James Gregory, Timothy Snow

Gordon Natural Area Biodiversity Studies Documents

No abstract provided.