Life Sciences Commons^™

Expanding The Temporal Dimensions Of Developmental Biology: The Role Of Environmental Agents In Establishing Adult-Onset Phenotypes, Scott F. Gilbert

Biology Faculty Works

Developmental biology is expanding into several new areas. One new area of study concerns the production of adult-onset phenotypes by exposure of the fetus or neonate to environmental agents. These agents include maternal nutrients, developmental modulators (endocrine disruptors), and maternal care. In all three cases, a major mechanism for the generation of the altered phenotype is chromatin modification. Nutrient conditions, developmental modulators, and even maternal care appear to alter DNA methylation and other associated changes in chromatin that regulate gene expression. This brings a new, under-appreciated, dimension of gene regulation into developmental biology, and it also demonstrates the poverty of …

A Comparison Of Presettlement And Modern Forest Composition Along An Elevation Gradient In Central New Hampshire, Matthew A. Vadeboncoeur, Steven P. Hamburg, Charles V. Cogbill, Wendy Y. Sugimura

All Materials

Tree species composition is influenced not only by edaphic and climatic factors but also by natural and human-caused disturbances. To understand interactions among these influences, we compared forest species composition data from the time of European settlement with modern data. We derived elevation data for 2529 trees mapped by early land surveys (1770–1850) across a 1000 m elevation gradient in central New Hampshire and compared these with modern data (2004–2009) from the Forest Inventory and Analysis program (123 plots containing 2126 trees) and from permanent plots representing case studies of different land-use histories. Spruce and beech are much less abundant …

Benthic Habitat Characterization For The South Florida Ocean Measurement Facility (Sfomf), David S. Gilliam, Brian K. Walker

Marine & Environmental Sciences Faculty Reports

This report summarizes the distribution and relative abundance of two stony coral species (Acropora cervicornis and Acropora palmata) currently listed as threatened under the US Endangered Species Act (ESA) (Federal Register/Vol. 71, No. 129/Thursday, July 6, 2006 / Rules and Regulations, http://www.gpo.gov/fdsys/pkg/FR-2006-07-06/pdf/06-6017.pdf) and seven additional stony coral species which have been petitioned for listing as endangered or threatened under the ESA (Agaricia lamarcki, Dendrogyra cylindrus, Dichocoenia stokesii, Montastraea annularis, Montastraea faveolata, Montastraea franksi, and Mycetophyllia ferox) (Federal Register/Vol. 75, No. 27/Wednesday, February 10, 2010/Proposed Rules, http://www.nmfs.noaa.gov/pr/pdfs/fr/fr75-6616.pdf). This report also summarizes the abundance and distribution …

Orchard Floor Management, Marc A. Rowley

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Managing fruit orchards involves both the management of the orchard trees, and the orchard floor. Orchard floor management is vital to tree health, yield and fruit quality. Current standard management practices include maintaining a vegetation free tree row and a grass-covered alleyway. This system effectively controls weeds and creates a favorable environment for the fruit trees. However, limitations to standard orchard floor practices are that the grass alleyway provides no nutrient benefit, and current practices do not readily lend themselves to organic management. Alternative in-row and alleyway systems are requisite to creating improved orchard floor management systems.

Three different approaches …

Seasonal Transport Of Suspended Solids And Nutrients Between Bear River And Bear Lake, Cody M. Allen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

I measured inflows and outflows of nutrients and suspended solid through the wetland complex, known as Dingle Marsh, at the Bear River Migratory Bird Refuge between October 2007 and September 2008. My analysis of changes throughout the year will help Dingle Marsh managers adjust the timing and volume of water movement between Bear River and Bear Lake to meet defined refuge goals, such as improving bird or other animal habitat. These results could also be used to protect Bear Lake’s water quality.

Automated samplers took readings of dissolved oxygen, turbidity, pH and water temperature every 30 minutes. These values were …

Genetic Status Of Isolated Populations Of Colorado River Cutthroat Trout (Oncorhynchus Clarkii Pleuriticus) In The North Fork Little Snake River Drainage, Wyoming, Rachel Van Horne

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Over the last century native cutthroat trout populations have declined in the western United States. Habitat fragmentation is one of the main causes for this decline. Human actions such as the construction of roads, weirs, dams, and water diversions intersect streams and prevent the natural movement of fish. In many cases native cutthroat trout are now confined to headwater streams above human-created barriers. These barriers not only fragment the populations but also increase the risk of individual population extinction.

This study established a baseline genetic structure for nine isolated populations of Colorado River cutthroat trout in the North Fork Little …

Homologous Recombination In Nannochloropsis: A Powerful Tool In An Industrially Relevant Alga, Donald P. Weeks

Department of Biochemistry: Faculty Publications

The availability of facile methods for targeted gene knockout and gene replacement based on homologous recombination in bacteria and yeast systems has driven rapid progress in understanding many of the complex metabolic and regulatory networks in prokaryotic and eukaryotic cells. The lack of such tools in other organisms is a major impediment to progress both in fundamental research and in research that is directed toward practical economic and societal outcomes. For example, the current goal to replace fossil fuels with renewable energy sources produced by plants and algae is hampered in both the short term and the long term by …

The Biogeography Of Marbled Godwit (Limosa Fedoa) Populations In North America, Bridget E. Olson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The mission of the U.S. Fish and Wildlife Service (USFWS) is working with others to conserve, protect, and enhance fish, wildlife, plants, and their habitats for the continuing benefit of the American people. Toward fulfillment of that mission, a priority of the USFWS is conservation and management of migratory birds. Effective conservation actions to ensure the continued existence of a species on the landscape cannot be designed without first understanding basic life history characteristics of a species. It is common in the case of migratory birds, that we lack understanding of some of their elemental biological traits.

The Marbled Godwit, …

Effect Of Voluntary Exercise And Diet On The Unfolded Protein Response In The Brain Of Mice, Yu Ho Kim

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The medical costs for many chronic diseases are increasing dramatically and placing a major financial burden on nations and individuals in both developed and developing countries. A number of chronic diseases, such as obesity, type 2 diabetes and some neurodegenerative diseases are all attenuated by a history of physical activity suggesting that they may be interconnected in some way. It has been suggested that cellular stress is a major factor promoting these chronic diseases.

Cellular stress occurs in a specific compartment within the cell, the endoplasmic reticulum, whose normal function is in the synthesis and folding of proteins into the …

Forage News [2011-12], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• Heart of America Grazing Conference
• UK Forage Variety Tests
• Forage Dynamics and Calf Behavior in Two Creep Grazing Systems
• Testing and Feeding Tobacco-Brown Hay and Silage
• World Population Hits Seven Billion
• Farmers Use of Broadband Internet
• High Cattle Prices to Continue, Analysts Say

A Method For Representing Contextualized Information (Merci) To Improve Situational Awareness Among Electronic Message Brokering System Dashboard Users, Arunkumar Srinivasan

Dissertations and Theses (Open Access)

Electronic health information brokering systems are of interest to public health informatics because they emphasize how data can be effectively shared and utilized across healthcare institutions and among providers so as to improve the quality of care, increase efficiency, and reduce costs (Lumpkin, 2002). In the domain of public health (PH) specifically, where complete and timely reporting of data is critical for all epidemiological and disease surveillance activities (Langmuir, 1976), it is imperative to ensure proper functioning of the electronic information exchange infrastructure. Receiving multiple types of data, in various formats from numerous sources, and triaging them to the appropriate …

Efficacy Of Genetically Modified Bt Toxins Against Insects With Different Genetic Mechanisms Of Resistance, Bruce E. Tabashnik, Fangneng P. Huang, Mukti N. Ghimire, B. Rogers Leonard, Blair D. Siegfried, Murugesan Rangasamy, Yajun Yang, Yidong Wu, Linda J. Gahan, David G. Heckel, Alejandro Bravo, Mario Soberón

Department of Entomology: Faculty Publications

Transgenic crops that produce Bacillus thuringiensis (Bt) toxins are grown widely for pest control, but insect adaptation can reduce their efficacy. The genetically modified Bt toxins Cry1AbMod and Cry1AcMod were designed to counter insect resistance to native Bt toxins Cry1Ab and Cry1Ac. Previous results suggested that the modified toxins would be effective only if resistance was linked with mutations in genes encoding toxin-binding cadherin proteins. Here we report evidence from five major crop pests refuting this hypothesis. Relative to native toxins, the potency of modified toxins was > 350-fold higher against resistant strains of Plutella xylostella and Ostrinia nubilalis …

Smith’S Longspur In Knox County, Nebraska, Mark A. Brogie

Nebraska Bird Review

Smith's Longspur (Calcarius pictus) is considered to be an uncommon casual spring migrant and is limited in spring to the southeast comer of Nebraska (Sharpe et al. 2001). This note provides the only known record for Smith's Longspur for spring in northeast Nebraska.

Subscription And Organization Information [December 2011]

Nebraska Bird Review

The Nebraska Bird Review is published quarterly by the Nebraska Ornithologists' Union, Inc., as its official journal, and is sent to members not in arrears of dues. Annual subscription rates (on a calendar-year basis only): $15 in the United States, $18 in Canada, and $30 in all other countries, payable in advance. Single copies are $4 each, postpaid, in the United States, $5 in Canada, and $8 elsewhere. Send orders for back issues to Anita Breckbill, NOU Librarian, c/o Music Library, WMB 30, University of Nebraska, Lincoln, NE 68588-0101.

Memberships in the NOU (on a calendar-year basis only): Active Household …

First Discovery Of A Four-Egg Clutch For Mountain Plover (Charadrius Montanus) In Nebraska, Bartholomew L. Bly, Travis Wooten

Nebraska Bird Review

On 27 May 2010, the first documented Mountain Plover nest in Nebraska to contain a clutch of four eggs was documented in a fallow strip of a dryland crop field in southern Kimball County. Mountain Plover typically have a clutch size of 3 eggs, though clutches with 1 and 2 eggs are observed in approximately 15% of nesting attempts (Knopf and Wunder 2006). Clutches with 4 eggs are rare and have been reported to occur in less than 1% of the population (Knopf and Wunder 2006). Five 4-egg clutches have been reported in Colorado and one in Montana (see Knopf …

Index To Volume 79

Nebraska Bird Review

Ahlschwede, Carla 71

Allen, Edward 83

Allison, Scott 32

Alsop, FJ 36

American Ornithologists' Union 109–110

Anderson, BW 36

Arkansas Audubon Society 36

Avocet, American 55, 68, 73, 89, 125

Genetic Structure Of Grass Carp Populations In The Missouri And Mississippi River Basins, Usa, Bobbi M. Adams, Katie N. Bertrand, Michael L. Brown, Donald Auger

The Prairie Naturalist

We provided an early characterization of the genetic structure of the grass carp (Ctenopharyngodon idella) population as it expands its distribution in both the Missouri and Mississippi River basins. Further, we provided initial comparisons of allelic richness at 17 polymorphic microsatellite markers between 56 grass carp from the USA, and six from the Yangtze River in China. The number of alleles per locus ranged from two to eight and size ranges of alleles for fish collected from the invaded and native ranges were similar (P ≤ 0.001; 107–226 bp) to those previously reported in the literature. Distance-based clustering …

Notes On The Distribution Of Eastern Woodrats And Hispid Cotton Rats In South-Central Nebraska, Heather D. Wills, Keith Geluso, Eric J. Smits, Joseph T. Springer, Wesley E. Newton

The Prairie Naturalist

The eastern woodrat (Neotoma floridana) and hispid cotton rat (Sigmodon hispidus) reach distributional limits in southern Nebraska (Jones 1964, Farney 1975). In the last half-century, both species have expanded their distributional ranges in the region (Kugler and Geluso 2009, Wright et al. 2010). Herein, we report new localities of occurrence for both species that extend known distributional boundaries in south-central Nebraska beyond those reported by Kugler and Geluso (2009) and Wright et al. (2010).

Associated with other studies, we captured small mammals in Sherman live-traps in south-central Nebraska. Voucher specimens were deposited in collections at the …

Comparison Of Fish Communities In Recently Constructed Side-Channel Chutes With The Main Stem Missouri River, Kasey Whiteman, Vincent H. Travnichek, Darrick L. Garner, Brandon Eder, Kirk Steffensen

The Prairie Naturalist

Two United States Army Corp of Engineers- (USACE) funded projects were conducted from 2006 to 2008 along the Missouri River to monitor fish communities in recently constructed side-channel chutes and to monitor pallid sturgeon (Scaphirhynchus albus) and the associated fish assemblage in the main stem Missouri River. Data from both monitoring projects were compared to evaluate fish assemblages among four mitigated habitats (e.g., constructed side-channel chutes) and the main-stem Missouri River. Chutes had a greater overall number of species (n = 59) and higher species richness (Margalef’s index = 5.81), but richness was not different (F1, 4 = …

Patterns Of Age-0 Gizzard Shad Abundance And Food Habits In A Nebraska Irrigation Reservoir, Christopher L. Sullivan, Casey W. Schoenebeck, Keith D. Koupal, W. Wyatt Hoback, Brian C. Peterson

The Prairie Naturalist

Gizzard shad (Dorosoma cepedianum) are prolific spawners that can influence reservoir communities. Larval gizzard shad may compete with larval recreational fish for zooplankton resources. Therefore, it is necessary to determine larval gizzard shad dynamics and food habits to better understand their potential for competition with larval recreational fish. Our study examined age-0 gizzard shad abundance in Harlan County Reservoir during late spring/summer from 2002–2010 and food habits and prey electivity of age-0 gizzard shad during late spring/summer 2008 and 2009. The annual peak age-0 gizzard shad density 3 from 2002–2010 ranged from 50 to 380/100 m , which …

Northern Harrier Hatches Mallard Nest, Jeffery W. Stackhouse, Benjamin A. Geaumont

The Prairie Naturalist

The northern harrier (Circus cyaneus) is a widespread raptor commonly found nesting throughout the Northern Great Plains. Northern harriers forage primarily on small mammals and passerines with the males providing the majority of prey to nestlings until 14–28 days of age (Redpath et al. 2006, Vukovich and Ritchison 2006). Although the genus Circus is known to predate eggs from nest of many nesting birds (Hiraldo et al. 1975, Donaszar et al. 1996, Opermanis et al. 2000), few have been recorded commandeering nests of different species (Laine 1928, Fleskes 1992). In June 2010, we observed a northern harrier that …

Late Seasonal Captures Of The Plains Pocket Mouse (Perognathus Flavescens) In Iowa, Hans W. Otto, Jeremy A. White

The Prairie Naturalist

The plains pocket mouse, Perognathus flavescens, is a nocturnal granivore that inhabits friable soils in sparsely vegetated areas (Monk and Jones 1996). In the United States, the distribution of the plains pocket mouse extends from Arizona, New Mexico, and Texas through the Great Plains to North Dakota and Minnesota (Hall 1981). This species reaches its easternmost limits in Iowa, where it has been documented from a limited number of grassland sites in eastern, central, and western parts of the state (Bowles 1975, Wilson et al. 1996). Due to loss of grassland habitat, the plains pocket mouse is currently listed …

Effects Of Nitrogen Deposition And Empirical Nitrogen Critical Loads For Ecoregions Of The United States, Linda H. Pardo, Mark E. Fenn, Christine L. Goodale, Linda H. Geiser, Charles T. Driscoll, Edith B. Allen, Jill S. Baron, Roland Bobbink, William D. Bowman, Christopher M. Clark, Bridget Emmett, Frank S. Gilliam, Tara L. Greaver, Sharon J. Hall, Erik A. Lilleskov, Lingli Liu, Jason A. Lynch, Knute J. Nadelhoffer, Steven S. Perakis, Molly J. Robin-Abbott, John L. Stoddard, Kathleen C. Weathers, Robin L. Dennis

Biological Sciences Faculty Research

Human activity in the last century has led to a significant increase in nitrogen (N) emissions and atmospheric deposition. This N deposition has reached a level that has caused or is likely to cause alterations to the structure and function of many ecosystems across the United States. One approach for quantifying the deposition of pollution that would be harmful to ecosystems is the determination of critical loads. A critical load is defined as the input of a pollutant below which no detrimental ecological effects occur over the long-term according to present knowledge. The objectives of this project were to synthesize …

Fall 2011 Bird Banding At Wildcat Hills Nature Center, Colin Woolley

Nebraska Bird Review

Rocky Mountain Bird Observatory has been operating a fall migration bird banding station at the Wildcat Hills Nature Center in Scotts Bluff Co. since 2007. In 2011, during our fifth year of banding, we captured a few new species, had new high totals for other species, and had a record number new high total of recaptures. Weather permitting, we banded on weekdays from August 31 through October 10 for five hours per day beginning soon after sunrise. We caught and banded 735 individual birds of 32 species. We banded two new species for the station in 2011: one Red-eyed Vireo …

The Effects Of Playing Exergames On Energy Expenditure, Demetrice Kirkwood

Masters Theses & Specialist Projects

The purpose of this study was to assess the performance, ratings of perceived exertion, metabolic responses, and energy expenditure as individuals participated in interactive video game play. There were 14 participants that participated in the study, whose age was 20.1 ± 1.64 years of age. Participants completed a maximal aerobic test to exhaustion (VO2max test), and then 30 minute testing session on both the Kinect Adventures (K) and Wii Fit Plus game. Data were analyzed using a dependent t-test and one-way ANOVA. Significance was accepted at P ≤ 0.05. Energy expenditure and RPE were significant in both exergames interactive game …

Observations Of Brachygnathia Superior (Underbite) In Wild Ruminates In Western Montana, Usa, J. A. Hoy, G. T. Haas, R. D. Hoy, Pamela Hallock

Marine Science Faculty Publications

Since spring of 1995 developmental malformations have been observed on many species of vertebrates. The most frequently observed of a range of skeletal anomalies is brachygnathia superior, also called mandibular prognathia, resulting from underdevelopment in length and width of the premaxillary bone forward of the upper premolars on ruminant species. To quantify these observations, facial anatomy was examined for bone and dental malformations on 1061 white-tailed deer (Odocoileus virginianus) that were accident-killed or died of natural causes between January 1996 and December 2010 in northern Ravalli County in the Bitterroot Valley of west-central, Montana, USA. Observations of brachygnathia …

Hexapod Herald - Vol. 23, No. 6, December 2011

Hexapod Herald and Other Entomology Department Newsletters

Welcome

Congratulations

Grants

Meet and Off Campus Student

This N' That

Faculty News

Student News

Blast from the Past

Travel

Heterogeneous Rates Of Molecular Evolution Among Cryptic Species Of The Ciliate Morphospecies Chilodonella Uncinata, Laura A. Katz, Jennifer Deberardinis, Meaghan S. Hall, Alexandra M. Kovner, Micah Dunthorn, Spencer V. Muse

Biological Sciences: Faculty Publications

While molecular analyses have provided insight into the phylogeny of ciliates, the few studies assessing intraspecific variation have largely relied on just a single locus [e.g., nuclear small subunit rDNA (nSSUrDNA) or mitochondrial cytochrome oxidase I]. In this study, we characterize the diversity of several nuclear protein-coding genes plus both nSSU-rDNA and mitochondrial small subunit rDNA (mtSSU-rDNA) of five isolates of the ciliate morphospecies Chilodonella uncinata. Although these isolates have nearly identical nSSU-rDNA sequences, they differ by up to 8.0% in mtSSU-rDNA. Comparative analyses of all loci, including b-tubulin paralogs, indicate a lack of recombination between strains, demonstrating that the …

Restoring Salt Marsh And Functions To Newly Acquired Shoreline In North Mill Pond, Portsmouth, David M. Burdick

PREP Reports & Publications

A berm of construction debris used to fill salt marsh and steepen the shoreline along North Mill Pond many decades ago was removed in 2010 after the land was deeded to the City. Removal of the berm reestablished regular tidal flooding to over 2,400 ft2 of tidal marsh. From 2009 to 2011, the fifth grade classes at New Franklin School learned about the project and planted mussels, shrubs and marsh plants at the site. Plant survival was excellent in the low marsh (94%) and good in the high marsh (77%). By September 2011 (Year Two) plant cover increased to 42% …

Living With Emerging Contaminants: Proteomics Of 4-Nonylphenol Exposed Arrow Goby (Clevelandia Ios), Sarah Emily Johnson

Master's Theses

Alkylphenol ethoxylates (APEs) are widely used in industrial and household products as surfactants. APEs degrade into more toxic ethoxylates, such as 4-nonylphenol (NP), which has been shown to be an endocrine disruptor and enhance the growth of tumor cells. Nonylphenol is wider spread in Pacific estuaries than originally thought. Organisms in Morro Bay, California contain some of the highest concentrations of NP reported, while containing few other contaminants. As a benthic mud-dwelling fish, the arrow goby (Clevelandia ios) may be exposed to high levels of NP due to high contaminant sequestration rates in anaerobic mud. While ecotoxicology suggests …