Life Sciences Commons^™

Estimating Maize Grain Yield From Crop Biophysical Parameters Using Remote Sensing, Noemi Guindin-Garcia

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The overall objective of this investigation was to develop a robust technique to predict maize (Zea mays L.) grain yield that could be applied at a regional level using remote sensing with or without a simple crop growth simulation model. This study evaluated capabilities and limitations of the Moderate Resolution Imaging Spectroradiometer (MODIS) Vegetation Index 250-m and MODIS surface reflectance 500-m products to track and retrieve information over maize fields. Results demonstrated the feasibility of using MODIS data to estimate maize green leaf area index (LAI_g). Estimates of maize LAI_g obtained from Wide Dynamic Range Vegetation …

Micropropagation And Acclimatization Of 'Norton' Grapevine (Vitis Aestivalis), Brant B. Bigger

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Propagation of the Vitis aestivalis cultivar 'Norton‘ (syn='Cynthiana‘) through traditional woody cuttings has been difficult. Rooting of woody cuttings has been a major hindrance in propagating this cultivar and providing enough plants to meet grower needs. In vitro propagation offers another method of increasing plant material. Cultures were established and maintained on Murashige and Skoog (MS) medium supplemented with 4 M 6-benzyladenine (BA) and thiamine at 0.5 mg•L^-1 and solidified with Difco-Bacto agar at 7.5 g•L^-1. The objectives of this study were to determine optimal methods for in vitro production and ex vitro establishment of 'Norton‘ plantlets. …

Evaluation Of Novel Input Output Traits In Sorghum Through Biotechnology, Tejinder K. Mall

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Sorghum [Sorghum bicolor (L.) Moench] is the fifth most important cereal crop world-wide as well as an important source of feed, fiber and biofuel. It is a C4 plant and is well adapted to environments subject to high temperature and water limitation. Despite these agronomic qualities, it suffers from limitations of sensitivity to low temperature and the grain has drawbacks in relation to functionality and digestibility. The objectives of this study are: 1. To promote seed germination at low temperature and to enhance the seedling cold tolerance. 2. To enhance the grain digestibility and functionality. In an attempt to …

Tracing Water Sources Of Terrestrial Animal Populations With Stable Isotopes: Laboratory Tests With Crickets And Spiders, Kevin E. Mccluney, John L. Sabo

Biological Sciences Faculty Publications

Fluxes of carbon, nitrogen, and water between ecosystem components and organisms have great impacts across levels of biological organization. Although much progress has been made in tracing carbon and nitrogen, difficulty remains in tracing water sources from the ecosystem to animals and among animals (the ‘‘water web’’). Naturally occurring, nonradioactive isotopes of hydrogen and oxygen in water provide a potential method for tracing water sources. However, using this approach for terrestrial animals is complicated by a change in water isotopes within the body due to differences in activity of heavy and light isotopes during cuticular and transpiratory water losses. Here …

Cinq Essais Sur Le Développement Durable, Sophie Oliver

World Languages and Cultures

My senior project is a combination of my major of Modern Languages and Literature and my minor in Sustainable Environments. I have tried to combine everything I learned in the following essays which explain different elements of the sustainable movement in the world. Currently there is a big push towards environmentalism which was started by a global desire to repair the damage done to our planet Earth. My goal is to explain some of the situations addressed by the sustainable movement and to propose some solutions based on what I’ve learned in my five years at Cal Poly. During my …

Development Of Novel Biomarkers In Cancer: Detection Of Circulating Mir-141 As A Potential Prognostic Marker For Prostate Cancer, Jason Cadaoas Gonzales

UNLV Theses, Dissertations, Professional Papers, and Capstones

Prostate cancer (CAP) is the most common epithelial malignancy and the second leading cause of cancer deaths in American men. The identification of predictive and prognostic biomarkers in CAP patients is critical for improving clinical outcomes. Although the measurement of prostate-specific antigen (PSA) and radiographic studies are clinically approved to predict response to therapy, these tests can oftentimes prove to be inadequate in certain patients. Thus, it is important to discover new biomarkers to improve chances of survivability. We and others have shown that longitudinal measurements of circulating tumor cells (CTC) and lactate dehydrogenase (LDH) may aid in predicting response …

Discrete Diffusion Models To Study The Effects Of Mg2+ Concentration On The Phopq Signal Transduction System, Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Chaoyang Zhang

Faculty Publications

Background: The challenge today is to develop a modeling and simulation paradigm that integrates structural, molecular and genetic data for a quantitative understanding of physiology and behavior of biological processes at multiple scales. This modeling method requires techniques that maintain a reasonable accuracy of the biological process and also reduces the computational overhead. This objective motivates the use of new methods that can transform the problem from energy and affinity based modeling to information theory based modeling. To achieve this, we transform all dynamics within the cell into a random event time, which is specified through an information domain …

A New Approach To Construct Pathway Connected Networks And Its Application In Dose Responsive Gene Expression Profiles Of Rat Liver Regulated By 2,4dnt, Sudhir Chowbina, Youping Deng, Junmei Ai, Xiaogang Wu, Xin Guan, Mitchell S. Wilbanks, Barbara Lynn Escalon, Edward J. Perkins, Jake Y. Chen

Faculty Publications

Background: Military and industrial activities have lead to reported release of 2,4-dinitrotoluene (2,4DNT) into soil, groundwater or surface water. It has been reported that 2,4DNT can induce toxic effects on humans and other organisms. However the mechanism of 2,4DNT induced toxicity is still unclear. Although a series of methods for gene network construction have been developed, few instances of applying such technology to generate pathway connected networks have been reported.

Results: Microarray analyses were conducted using liver tissue of rats collected 24h after exposure to a single oral gavage with one of five concentrations of 2,4DNT. We observed …

Ancient And Recent Demographic Events Influence Mitochondrial Dna Diversity In An Immigrant Basque Population, Michael Christopher Davis

Boise State University Theses and Dissertations

The Basques are an ancient people, considered by many anthropologists to represent the oldest extant European population. Because of this, they have been the subject of numerous sociological and biological investigations. The Basque Diaspora, a relatively recent demographic expansion of the Basque population, has until now been overlooked in molecular genetic studies. Samples were taken from 53 individuals with Basque ancestry in Boise, Idaho, and the mitochondrial DNA (mtDNA) sequence variation of the first and second hypervariable regions were determined. Thirty-six mtDNA haplotypes were detected in the sample. Comparing the genetic diversity in the Idaho sample with other Basque populations, …

Influence Of Physiochemical And Watershed Characteristics On Mercury Concentration In Walleye, Sander Vitreus, M., Cari-Ann Hayer, Steven R. Chipps, J. J. Stone

Natural Resource Management Faculty Publications

Elevated mercury concentration has been documented in a variety of fish and is a growing concern for human consumption. Here, we explore the influence of physiochemical and watershed attributes on mercury concentration in walleye (Sander vitreus, M.) from natural, glacial lakes in South Dakota. Regression analysis showed that water quality attributes were poor predictors of walleye mercury concentration (R² = 0.57, p = 0.13). In contrast, models based on watershed features (e.g., lake level changes, watershed slope, agricultural land, wetlands) and local habitat features (i.e., substrate composition, maximum lake depth) explained 81% (p = 0.001) …

Corn Hybrids: Deer Taste The Difference, Joshua A. Delger, Kevin L. Monteith, Jonathan A. Jenks

Natural Resource Management Faculty Publications

As daylight begins to illuminate the countryside, a cold wind rustles through the leaves of the weedy rows of corn that you barely had time to get in the ground this past spring. The corn plants are stunted, the few small ears of corn that did grow are not even enticing to passing blackbirds, and that stud buck captured on your trail-camera months earlier is nowhere to be seen. Meanwhile, a couple hundred yards across the fence to the south, you hear the unmistakable sound of deer running through corn. Your heart rate involuntarily increases. As the sun continues to …

The Update, December 2010, University Of Northern Iowa. College Of Humanities, Arts And Sciences.

Update

Inside this issue:

-- American Chemical Society, a student affiliate group
-- Department News
-- Iowa Writing Project
-- UNI School of Music to Host 50th Anniversary Celebration: Varsity Men's Glee Club Christmas Variety Shows
-- Communication Studies: Student Showcased on the Jay Leno Show
-- Dmitri Vorobiev: An All Beethoven Recital Series
-- Student Spotlight: Philosophy: Joel Anderson
-- Student Spotlight: World Religions: Elizabeth Wiedenheft
-- Student Spotlight: Industrial Technology: Hannah Loan
-- UNI Students attend and participate in sixth Annual Multicultural Conference
-- Student Spotlights Continued
-- School of Music Events
-- UNI Forensics
-- Communication Studies Students …

Ecology And Transmission Of Buruli Ulcer Disease: A Systematic Review, Richard W. Merritt, Edward D. Walker, Pamela L. C. Small, John R. Wallace, Paul D. R. Johnson, Mark Eric Benbow, Daniel A. Boakye

Biology Faculty Publications

Buruli ulcer is a neglected emerging disease that has recently been reported in some countries as the second most frequent mycobacterial disease in humans after tuberculosis. Cases have been reported from at least 32 countries in Africa (mainly west), Australia, Southeast Asia, China, Central and South America, and the Western Pacific. Large lesions often result in scarring, contractual deformities, amputations, and disabilities, and in Africa, most cases of the disease occur in children between the ages of 4–15 years. This environmental mycobacterium, Mycobacterium ulcerans, is found in communities associated with rivers, swamps, wetlands, and human-linked changes in the aquatic environment, …

Reproductive Life History Of Fundulus Jenkensi And Comparative Development Of Five Sympatric Fundulid Species, Eric Thomas Lang

Master's Theses

Fundulus jenkinsi is recognized federally and within the state of Mississippi as a Species of Concern. Little is known about the life history of this coastal killifish, but a detailed reproductive histology study of F. jenkinsi and a diagnostic key of the early life stages of select members of Fundulidae can provide the foundation needed to accurately identify it and quantify reproductive parameters in this rare species in need of conservation. Monthly gonadosomatic index (GSI) of male and female F. jenkinsi were documented, and spawning phases and oocyte stages were examined using reproductive histology. In addition, various stages of …

Identification Of Functional Elements And Regulatory Circuits By Drosophila Modencode, Sushmita Roy, Jason Ernst, Peter Kharchenko, Pouya Kheradpour, Nicolas Negre, Matthew Eaton, Jane Landolin, Christopher Bristow, Lijia Ma, Michael Lin, Stefan Washietl, Bradley Arshinoff, Ferhat Ay, Patrick Meyer, Nicolas Robine, Nicole Washington, Luisa Di Stefano, Eugene Berezikov, Christopher Brown, Rogerio Candeias, Joseph Carlson, Adrian Carr, Irwin Jungreis, Daniel Marbach, Rachel Sealfon, Michael Tolstorukov, Sebastian Will, Artyom Alekseyenko, Carlo Artieri, Benjamin Booth, Angela Brooks, Qi Dai, Carrie Davis, Michael Duff, Xin Feng, Andrey Gorchakov, Tingting Gu, Jorja Henikoff, Philipp Kapranov, Renhua Li, Heather Macalpine, John Malone, Aki Minoda, Jared Nordman, Katsutomo Okamura, Marc Perry, Sara Powell, Nicole Riddle, Akiko Sakai, Anastasia Samsonova, Jeremy Sandler, Yuri Schwartz, Noa Sher, Rebecca Spokony, David Sturgill, Marijke Van Baren, Kenneth Wan, Li Yang, Charles Yu, Elise Feingold, Peter Good, Mark Guyer, Rebecca Lowdon, Kami Ahmad, Justen Andrews, Bonnie Berger, Steven Brenner, Michael R. Brent, Lucy Cherbas, Sarah C.R. Elgin, Thomas Gingeras, Robert Grossman, Roger Hoskins, Thomas Kaufman, William Kent, Mitzi Kuroda, Terry Orr-Weaver, Norbert Perrimon, Vincenzo Pirrotta, James Posakony, Bing Ren, Steven Russell, Peter Cherbas, Brenton Graveley, Suzanna Lewis, Gos Micklem, Brian Oliver, Peter Park, Susan Celniker, Steven Henikoff, Gary Karpen, Eric Lai, David Macalpine, Lincoln Stein, Kevin White, Manolis Kellis

Biology Faculty Research

To gain insight into how genomic information is translated into cellular and developmental programs, the Drosophila model organism Encyclopedia of DNA Elements (modENCODE) project is comprehensively mapping transcripts, histone modifications, chromosomal proteins, transcription factors, replication proteins and intermediates, and nucleosome properties across a developmental time course and in multiple cell lines. We have generated more than 700 data sets and discovered protein-coding, noncoding, RNA regulatory, replication, and chromatin elements, more than tripling the annotated portion of the Drosophila genome. Correlated activity patterns of these elements reveal a functional regulatory network, which predicts putative new functions for genes, reveals stage- and …

Explaining The Variability Of Free-Living And Attached Bacterioplankton Abundances In The Bay Of St. Louis, Mississippi, Allison K. Mojzis

Master's Theses

The Bay of St. Louis (BSL) is a shallow and vertically well-mixed estuary on the Gulf Coast of Mississippi and supports the recreational and commercial activities of the surrounding towns of Bay St. Louis, Diamondhead, DeLisle, and Pass Christian. In addition to residential communities, various industrial and commercial sites inhabit the watershed and coastline. The Hollywood casino, DuPont titanium dioxide plant, and multiple sew_age treatment plants, as well as nonpoint sources of pollution, contribute to poor water quality. To evaluate spatial and temporal changes in BSL water quality, freeliving and attached bacterioplankton concentrations were enumerated by epifluorescence microscopy. Nine stations …

Characterizing And Treating The Neuropathology Of Tuberous Sclerosis Complex In The Mouse, Sharon W. Way

Dissertations and Theses (Open Access)

Tuberous sclerosis complex (TSC) is a multisystem, autosomal dominant disorder affecting approximately 1 in 6000 births. Developmental brain abnormalities cause substantial morbidity and mortality and often lead to neurological disease including epilepsy, cognitive disabilities, and autism. TSC is caused by inactivating mutations in either TSC1 or TSC2, whose protein products are known inhibitors of mTORC1, an important kinase regulating translation and cell growth. Nonetheless, neither the pathophysiology of the neurological manifestations of TSC nor the extent of mTORC1 involvement in the development of these lesions is known. Murine models would greatly advance the study of this debilitating disorder. This thesis …

Rmi1 Is Essential For Early Embryonic Development And Attenuation Of Tumor Development, Haoyi Chen

Dissertations and Theses (Open Access)

RMI1 (BLM-Associated Protein 75 or Blap75) is highly conserved from yeast to human. Previous studies have shown that hRMI1 is required for BLM/TopoIIIα/RMI1 complex stability and function. However, in vivo functions of RMI1 remain elusive. To address this question, I generated RMI1 knockout mice by homologous replacement targeting. While RMI1+/- mice showed no obvious phenotype, deletion of both RMI1 alleles leads to early embryonic lethality before implantation. I then generated RMI1/p53 double knockout mice. After ionizing radiation treatment at 4Gy, RMI1/p53 double-heterzygous mice showed shortened tumor latency and aggressive tumor types when comparing with wild type, RMI1+/- and p53+/- control …

Exhausted Or Unlicensed: Can Field-Of-Use Restrictions In Biotech License Agreements Still Prevent Off-Label Use Promotion After Quanta Computer?, Kristal M. Wicks

The University of New Hampshire Law Review

[Excerpt] “In the biotechnology (biotech) industry, companies must be increasingly aware of their intellectual property and how their licensing strategies can impact their rights. When licensing patented technology, it is common practice for biotech companies to include restricted field-of-use provisions in their license agreements. Such provisions permit a licensee to only use licensed technology in a defined field and restrict use or development in another field. This licensing strategy plays an important role within the biotech industry because it allows companies to more effectively control their intellectual property and to more efficiently research and develop pharmaceutical products.

A problem that …

Rangeland Condition Assessment Of A Portion Of The Cal Poly Sheep Unit, Colin S. Mckim

Animal Science

This rangeland condition assessment was conducted as part of the Cal Poly Rangeland Condition Assessment Project. Five pastures comprising 31.7 acres at the Cal Poly sheep unit were assessed to collect baseline ecological information. Methods used were Line-point Intercept, Belt Transect, Residual Dry Matter, and the rangeland health indicators recommended by Pyke et al., 2002. Additionally, a preliminary species list was collected. The rangeland health assessment method found all pastures to have no to slight departure from the local reference area when evaluated for soil and site stability, hydrologic function, and biotic integrity.

The In Situ Function Of A Microbial Community Profiled By Ft-Ir: A Snapshot In Time, Ryan Roberts

Department of Biochemistry: Dissertations, Theses, and Student Research

Photographs of an ecosystem are an important tool in macro-community ecology. The photograph is a permanent record of species phenotype. In microbiology, biochemical activity provides the most descriptive information of an organism’s phenotype. A method for fingerprinting all biochemical activities occurring within a microbial community is analogous to a photograph. Infrared spectroscopy in the region between wavelengths 2500 to 20,000 nm (mid-IR) is a well established instrumental method for fingerprinting the total biochemical profile of axenic cultures. Spectra are complex and sensitive as demonstrated by the ability to discriminate between strains of bacteria, fungi, and algae. This thesis develops the …

Life History And Habitat Use Of The Juvenile Alabama Shad (Alosa Alabamae) In Northern Gulf Of Mexico Rivers, Paul Fraser Mickle

Dissertations

The Alabama shad, Alosa alabamae, is an anadromous species that is in decline and has seen extirpations from impoundments as well as decreased water quality. Alabama shad live in the Gulf of Mexico and ascend Northern Gulf of Mexico Drainages to reproduce early in the year (January-May). The juveniles spend the majority of the year in these freshwater systems before emigrating out to the Gulf of Mexico as late as December.

This dissertation focuses on the juvenile life stages that occur within the Northern Gulf of Mexico drainages. Spawning conditions of the river, as well as the habitat and diet, …

Folate Receptor-Targeted Delivery Of Small Interfering Rna To Cancer Cells, Yilin Zhang

Dissertations

The vitamin folic acid (folate, FA) has been extensively explored as a targeting ligand to deliver a variety of diagnostic/prognostic/therapeutic agents into various tumors through the assistance of its receptor – the folate receptor (FR). FR is over-expressed in many types of human cancer and can mediate internalization of FA-conjugates through an endocytic pathway. The discovery of small interfering RNA (siRNA), which is cable of inducing potent gene silencing in a sequence-specific manner, provides an excellent molecular tool to suppress aberrant gene expression in malignancies, and therefore siRNA has the potential to revolutionize cancer therapeutics. Towards the goal of developing …

Geological And Ichthyological Investigations Into Palaeodrainage Hypothesis For The Tennessee River, Andrea Karen Persons

Dissertations

The course of the ancestral Tennessee River has been debated in both the geological and biological literature for over 100 years. Several of the proposed courses for the ancestral Tennessee place its course across the state of Mississippi. Geochemical analysis of sedimentary rocks in the Pascagoula River basin supports these hypotheses suggesting that the rocks in the Pascagoula basin were derived from the Highland Rim of Tennessee and northern Alabama, while geochemical analysis of rocks from the Pearl River basin point to deposition from a mixture of sources including the ancestral Mississippi River and perhaps the ancestral Tennessee. To delve …

Toxicogenomics Analysis Of Non-Model Transcriptomes Using Next-Generation Sequencing And Microarray, Arun Rawat

Dissertations

With the advent of next generation technologies like Roche/454 Life Sciences that require low cost and less time for sequencing will help in providing a workable draft of non-model species genomes. Availability of high throughput microarray technologies for gene expression profiling provides low-cost tools for investigation of highly-integrated responses to various stimuli. These advancements along with bioinformatics processing have led to an increasing number of non-model species having well-annotated transcriptomes. The project focuses on the life cycle of development, functional annotation, and utilization of genomic tools for the avian wildlife species to determine the molecular impacts of exposure to munitions …

Supersweet Sweet Corn Cultivar Evaluation For Northern Indiana, 2010, Elizabeth T. Maynard

Purdue Fruit and Vegetable Research Reports

Indiana growers harvested sweet corn for fresh market sales from 6,100 acres in 2009, with an average yield of 69 cwt/acre (164 crates or 3.45 tons per acre) and total value of $16.8 million (USDA NASS,2010). Indiana ranks 14th among states for production of fresh market sweet corn. The 2007 USDA Ag Census reported 603 Indiana farms producing sweet corn for fresh markets and 51 farms selling to processors. Sweet corn fields for fresh market sales are located throughout the state. In northern Indiana, bi-color corn is most commonly grown. Varieties with improved eating quality are of interest to both …

Supersweet Sweet Corn Cultivar Evaluation For Northern Indiana, 2010, Elizabeth T. Maynard

Midwest Vegetable Trial Reports

Indiana growers harvested sweet corn for fresh market sales from 6,100 acres in 2009, with an average yield of 69 cwt/acre (164 crates or 3.45 tons per acre) and total value of $16.8 million (USDA NASS,2010). Indiana ranks 14th among states for production of fresh market sweet corn. The 2007 USDA Ag Census reported 603 Indiana farms producing sweet corn for fresh markets and 51 farms selling to processors. Sweet corn fields for fresh market sales are located throughout the state. In northern Indiana, bi-color corn is most commonly grown. Varieties with improved eating quality are of interest to both …

Sugar-Enhanced Sweet Corn Cultivar Evaluation For Northern Indiana, 2010, Elizabeth T. Maynard

Midwest Vegetable Trial Reports

Indiana growers harvested sweet corn for fresh market sales from 6,100 acres in 2009, with an average yield of 69 cwt/acre (164 crates or 3.45 tons per acre) and total value of $16.8 million (USDA NASS, 2010). Indiana ranks 14th among states for production of fresh market sweet corn. The 2007 USDA Ag Census reported 603 Indiana farms producing sweet corn for fresh markets and 51 farms selling to processors. Sweet corn fields for fresh market sales are located throughout the state. In northern Indiana, bi-color corn is most commonly grown. Varieties with improved eating quality are of interest to …

Sugar-Enhanced Sweet Corn Cultivar Evaluation For Northern Indiana, 2010, Elizabeth T. Maynard

Purdue Fruit and Vegetable Research Reports

Indiana growers harvested sweet corn for fresh market sales from 6,100 acres in 2009, with an average yield of 69 cwt/acre (164 crates or 3.45 tons per acre) and total value of $16.8 million (USDA NASS, 2010). Indiana ranks 14th among states for production of fresh market sweet corn. The 2007 USDA Ag Census reported 603 Indiana farms producing sweet corn for fresh markets and 51 farms selling to processors. Sweet corn fields for fresh market sales are located throughout the state. In northern Indiana, bi-color corn is most commonly grown. Varieties with improved eating quality are of interest to …

Transcriptional Regulation Of Shigella Virulence Plasmid-Encoded Genes By Virb And Crp, Christopher Thomas Hensley

UNLV Theses, Dissertations, Professional Papers, and Capstones

Shigella flexneri is a species of Gram-negative intracellular pathogens that causes bacillary dysentery in humans. Shigella relies on the precise transcriptional regulation of virulence genes, encoded by a large virulence plasmid, for invasion and infection of human colonic epithelial cells. The transcription of most identified virulence genes are regulated through a cascade controlled by the primary regulator of virulence genes, VirF, and the global transcriptional regulator, VirB. Currently, few studies have addressed how individual Shigella virulence genes are precisely regulated for optimal expression during specific stages of pathogenesis and within the constraints of the regulatory cascade. This work addresses how …